Wall clock time and date at job start Tue Mar 31 2020 21:52:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42907 * 113.99937 * 2 1
4 4 H 1.09000 * 109.46852 * 29.99697 * 3 2 1
5 5 C 1.50703 * 109.47112 * 149.99774 * 3 2 1
6 6 O 1.21274 * 120.00288 * 21.99674 * 5 3 2
7 7 N 1.34778 * 119.99928 * 202.00151 * 5 3 2
8 8 C 1.47490 * 125.66286 * 355.36178 * 7 5 3
9 9 C 1.55021 * 104.89254 * 156.02068 * 8 7 5
10 10 C 1.54519 * 101.53082 * 36.38021 * 9 8 7
11 11 C 1.47185 * 125.66521 * 175.40923 * 7 5 3
12 12 C 1.52518 * 110.04984 * 206.90511 * 10 9 8
13 13 N 1.47318 * 108.39771 * 287.92446 * 12 10 9
14 14 C 1.36937 * 121.06295 * 130.60022 * 13 12 10
15 15 H 1.07994 * 119.99933 * 210.80512 * 14 13 12
16 16 C 1.38816 * 119.99874 * 30.80237 * 14 13 12
17 17 N 1.31615 * 119.99726 * 11.22752 * 16 14 13
18 18 Si 1.86801 * 120.00032 * 191.23137 * 16 14 13
19 19 H 1.48498 * 109.47320 * 59.99795 * 18 16 14
20 20 H 1.48493 * 109.47171 * 179.97438 * 18 16 14
21 21 H 1.48505 * 109.46801 * 300.00114 * 18 16 14
22 22 C 1.47164 * 117.87568 * 310.62387 * 13 12 10
23 23 C 1.53278 * 108.55589 * 51.10619 * 22 13 12
24 24 O 1.42066 * 110.32805 * 83.93750 * 10 9 8
25 25 C 1.53000 * 109.47065 * 269.99670 * 3 2 1
26 26 C 1.53784 * 113.61213 * 157.55435 * 25 3 2
27 27 C 1.53958 * 87.01569 * 220.04813 * 26 25 3
28 28 C 1.53779 * 87.11270 * 25.36449 * 27 26 25
29 29 H 1.08991 * 109.47341 * 300.00529 * 1 2 3
30 30 H 1.09004 * 109.46820 * 60.00012 * 1 2 3
31 31 H 1.09002 * 109.46687 * 179.97438 * 1 2 3
32 32 H 1.09004 * 110.35209 * 37.16866 * 8 7 5
33 33 H 1.08997 * 110.44744 * 274.92650 * 8 7 5
34 34 H 1.09003 * 111.01242 * 154.44313 * 9 8 7
35 35 H 1.09000 * 111.01838 * 278.31759 * 9 8 7
36 36 H 1.08993 * 109.90591 * 300.83942 * 11 7 5
37 37 H 1.09007 * 109.90585 * 61.91219 * 11 7 5
38 38 H 1.08993 * 109.68488 * 47.64966 * 12 10 9
39 39 H 1.08999 * 109.67922 * 168.20246 * 12 10 9
40 40 H 0.97004 * 119.99831 * 179.97438 * 17 16 14
41 41 H 1.09000 * 109.62283 * 291.38795 * 22 13 12
42 42 H 1.08995 * 109.77812 * 170.91544 * 22 13 12
43 43 H 1.08999 * 109.51467 * 187.19044 * 23 22 13
44 44 H 1.09006 * 109.51182 * 67.04117 * 23 22 13
45 45 H 1.08993 * 112.85193 * 288.74962 * 25 3 2
46 46 H 1.09001 * 113.61604 * 334.56164 * 26 25 3
47 47 H 1.08999 * 113.61544 * 105.47360 * 26 25 3
48 48 H 1.08995 * 113.53830 * 270.80815 * 27 26 25
49 49 H 1.09005 * 113.73933 * 139.94732 * 27 26 25
50 50 H 1.08998 * 113.61418 * 220.09001 * 28 27 26
51 51 H 1.08996 * 113.69200 * 89.19821 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3449 1.9994 0.5138
5 6 3.3386 1.2640 0.7105
6 8 3.9362 0.2142 0.8180
7 7 3.8625 2.3935 1.2265
8 6 3.2944 3.7473 1.0856
9 6 3.8508 4.5407 2.2956
10 6 5.2750 3.9544 2.4209
11 6 5.0969 2.4810 2.0232
12 6 5.7613 4.0655 3.8622
13 7 6.0535 5.4812 4.1465
14 6 5.5606 6.0929 5.2681
15 1 5.3346 7.1488 5.2521
16 6 5.3515 5.3558 6.4257
17 7 5.8268 4.1322 6.5214
18 14 4.3956 6.1005 7.8473
19 1 3.0260 6.4513 7.3931
20 1 4.3119 5.1169 8.9567
21 1 5.0885 7.3252 8.3221
22 6 6.8915 6.2171 3.1864
23 6 6.3138 6.0166 1.7809
24 8 6.1612 4.6161 1.5293
25 6 2.2177 1.7714 -1.4425
26 6 2.3092 3.2995 -1.5892
27 6 1.4679 3.1463 -2.8695
28 6 0.9165 1.8472 -2.2585
29 1 -0.3633 0.5139 0.8898
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 2.2059 3.7078 1.1263
33 1 3.6219 4.2023 0.1509
34 1 3.8853 5.6087 2.0803
35 1 3.2665 4.3435 3.1944
36 1 5.0063 1.8637 2.9169
37 1 5.9474 2.1490 1.4276
38 1 4.9862 3.7075 4.5398
39 1 6.6657 3.4710 3.9913
40 1 5.6810 3.6172 7.3304
41 1 7.9111 5.8333 3.2211
42 1 6.8912 7.2784 3.4343
43 1 6.9916 6.4472 1.0438
44 1 5.3424 6.5066 1.7132
45 1 3.0202 1.2354 -1.9491
46 1 1.8000 3.8456 -0.7950
47 1 3.3212 3.6609 -1.7713
48 1 2.0658 2.9874 -3.7668
49 1 0.7144 3.9239 -2.9951
50 1 0.8059 1.0379 -2.9802
51 1 0.0259 1.9941 -1.6476
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000972488010.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:52:00
Heat of formation + Delta-G solvation = -58.173812 kcal
Electronic energy + Delta-G solvation = -31950.900639 eV
Core-core repulsion = 27852.727253 eV
Total energy + Delta-G solvation = -4098.173386 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-40.74980 -39.55535 -38.23064 -37.10385 -35.98758 -34.47130 -31.73497 -31.29482
-29.77010 -29.58279 -27.45252 -26.69666 -25.98197 -25.57472 -23.93103 -23.33891
-22.45588 -21.33202 -19.90610 -19.25769 -18.83927 -17.44400 -17.22959 -16.67344
-16.33456 -15.83643 -15.66832 -15.28182 -15.10626 -14.69719 -14.45034 -14.27430
-14.08648 -13.84958 -13.52888 -13.34026 -12.91226 -12.84438 -12.74385 -12.56723
-12.38708 -12.35547 -12.10485 -12.01479 -11.64569 -11.38757 -11.12338 -11.10414
-11.00010 -10.88764 -10.74700 -10.70787 -10.54536 -10.34052 -10.25999 -10.04125
-9.90535 -9.57268 -9.33140 -9.03188 -8.59128 -8.44901 -6.72294 -5.88462
-3.37486 2.66683 2.82091 3.30926 3.36971 3.38016 3.75333 4.16273
4.23922 4.37900 4.39359 4.41038 4.55142 4.67437 4.80428 4.85798
5.03151 5.06320 5.13442 5.18779 5.25194 5.33642 5.39193 5.41068
5.44693 5.52201 5.55431 5.58362 5.62904 5.65072 5.73834 5.78085
5.83036 5.90050 5.95827 6.05530 6.13333 6.17019 6.25568 6.31924
6.43043 6.48100 6.60551 6.77074 6.90327 7.02373 7.41749 7.64864
7.67359 7.88429 8.30305 8.31641 9.07210 9.68510 10.28577 11.19726
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.014845 B = 0.003354 C = 0.003106
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1885.756895 B = 8346.994265 C = 9011.218735
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 O -0.357 6.357
3 C 0.088 3.912
4 H 0.081 0.919
5 C 0.530 3.470
6 O -0.525 6.525
7 N -0.609 5.609
8 C 0.095 3.905
9 C -0.146 4.146
10 C 0.086 3.914
11 C 0.127 3.873
12 C 0.166 3.834
13 N -0.591 5.591
14 C -0.258 4.258
15 H 0.066 0.934
16 C 0.008 3.992
17 N -0.902 5.902
18 Si 0.905 3.095
19 H -0.283 1.283
20 H -0.289 1.289
21 H -0.282 1.282
22 C 0.109 3.891
23 C 0.046 3.954
24 O -0.376 6.376
25 C -0.124 4.124
26 C -0.140 4.140
27 C -0.140 4.140
28 C -0.134 4.134
29 H 0.042 0.958
30 H 0.051 0.949
31 H 0.089 0.911
32 H 0.068 0.932
33 H 0.076 0.924
34 H 0.089 0.911
35 H 0.086 0.914
36 H 0.085 0.915
37 H 0.076 0.924
38 H 0.093 0.907
39 H 0.031 0.969
40 H 0.257 0.743
41 H 0.026 0.974
42 H 0.062 0.938
43 H 0.082 0.918
44 H 0.047 0.953
45 H 0.101 0.899
46 H 0.088 0.912
47 H 0.076 0.924
48 H 0.081 0.919
49 H 0.069 0.931
50 H 0.071 0.929
51 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.961 -0.393 -16.643 19.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.274 6.274
3 C 0.027 3.973
4 H 0.099 0.901
5 C 0.317 3.683
6 O -0.400 6.400
7 N -0.345 5.345
8 C -0.027 4.027
9 C -0.184 4.184
10 C 0.045 3.955
11 C 0.005 3.995
12 C 0.040 3.960
13 N -0.315 5.315
14 C -0.387 4.387
15 H 0.084 0.916
16 C -0.191 4.191
17 N -0.546 5.546
18 Si 0.734 3.266
19 H -0.209 1.209
20 H -0.215 1.215
21 H -0.208 1.208
22 C -0.017 4.017
23 C -0.032 4.032
24 O -0.296 6.296
25 C -0.144 4.144
26 C -0.178 4.178
27 C -0.178 4.178
28 C -0.172 4.172
29 H 0.060 0.940
30 H 0.069 0.931
31 H 0.107 0.893
32 H 0.087 0.913
33 H 0.094 0.906
34 H 0.107 0.893
35 H 0.105 0.895
36 H 0.103 0.897
37 H 0.094 0.906
38 H 0.112 0.888
39 H 0.049 0.951
40 H 0.067 0.933
41 H 0.044 0.956
42 H 0.081 0.919
43 H 0.101 0.899
44 H 0.066 0.934
45 H 0.119 0.881
46 H 0.106 0.894
47 H 0.094 0.906
48 H 0.099 0.901
49 H 0.088 0.912
50 H 0.090 0.910
51 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -10.473 -1.428 -16.589 19.671
hybrid contribution -0.735 0.766 1.077 1.512
sum -11.208 -0.662 -15.512 19.149
Atomic orbital electron populations
1.23079 0.80950 1.03233 1.00380 1.88028 1.19420 1.25106 1.94882
1.21926 0.93364 0.86481 0.95526 0.90112 1.19898 0.86784 0.82685
0.78929 1.90708 1.61721 1.29667 1.57926 1.48490 1.26258 1.06825
1.52896 1.22730 0.97600 0.82415 0.99966 1.23216 0.97193 1.00418
0.97559 1.22644 0.88973 0.90066 0.93858 1.21796 0.86428 0.95678
0.95633 1.21161 1.00013 0.86269 0.88588 1.43992 1.56457 1.07774
1.23303 1.19076 1.37317 0.94249 0.88072 0.91629 1.25181 0.99814
0.97011 0.97110 1.69953 1.46412 1.10396 1.27808 0.86346 0.79966
0.78330 0.81932 1.20928 1.21513 1.20780 1.21597 0.93914 0.96963
0.89273 1.23111 0.99838 0.81862 0.98370 1.87678 1.65378 1.21628
1.54872 1.22989 0.99957 0.97113 0.94294 1.23253 1.01258 0.94904
0.98350 1.22844 0.99609 0.97728 0.97572 1.22993 0.96638 0.98371
0.99169 0.93959 0.93068 0.89299 0.91341 0.90582 0.89297 0.89530
0.89661 0.90591 0.88837 0.95127 0.93299 0.95584 0.91937 0.89950
0.93435 0.88111 0.89364 0.90557 0.90067 0.91176 0.91020 0.89852
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.18 10.57 101.05 1.07 1.25 16
2 O -0.36 -4.91 9.93 -54.10 -0.54 -5.44 16
3 C 0.09 1.12 2.00 -27.88 -0.06 1.06 16
4 H 0.08 0.87 6.35 -51.93 -0.33 0.54 16
5 C 0.53 8.83 7.08 -10.98 -0.08 8.75 16
6 O -0.52 -10.93 16.97 -13.31 -0.23 -11.16 16
7 N -0.61 -9.62 3.33 -170.68 -0.57 -10.19 16
8 C 0.10 1.25 4.87 -2.43 -0.01 1.23 16
9 C -0.15 -2.33 5.91 -24.87 -0.15 -2.47 16
10 C 0.09 1.59 0.83 -89.73 -0.07 1.52 16
11 C 0.13 2.28 6.24 -3.33 -0.02 2.26 16
12 C 0.17 3.79 3.88 -3.84 -0.01 3.77 16
13 N -0.59 -14.03 2.93 -172.17 -0.50 -14.53 16
14 C -0.26 -6.67 9.64 -15.06 -0.15 -6.82 16
15 H 0.07 1.66 7.85 -52.49 -0.41 1.24 16
16 C 0.01 0.22 5.05 -17.43 -0.09 0.13 16
17 N -0.90 -25.28 11.17 55.49 0.62 -24.66 16
18 Si 0.90 20.82 29.57 -169.99 -5.03 15.80 16
19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16
20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
22 C 0.11 2.17 6.71 -3.54 -0.02 2.15 16
23 C 0.05 0.77 6.76 37.30 0.25 1.02 16
24 O -0.38 -6.92 10.23 -35.23 -0.36 -7.28 16
25 C -0.12 -1.30 3.33 -89.81 -0.30 -1.60 16
26 C -0.14 -1.23 5.41 -25.82 -0.14 -1.36 16
27 C -0.14 -1.02 8.09 -25.83 -0.21 -1.23 16
28 C -0.13 -1.06 6.18 -25.92 -0.16 -1.22 16
29 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16
30 H 0.05 0.37 4.94 -51.93 -0.26 0.11 16
31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16
32 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16
33 H 0.08 0.92 6.08 -51.93 -0.32 0.60 16
34 H 0.09 1.39 5.98 -51.93 -0.31 1.08 16
35 H 0.09 1.49 7.86 -51.93 -0.41 1.09 16
36 H 0.09 1.61 7.79 -51.93 -0.40 1.21 16
37 H 0.08 1.40 8.07 -51.92 -0.42 0.99 16
38 H 0.09 2.35 6.18 -51.93 -0.32 2.03 16
39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16
41 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16
42 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16
43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
44 H 0.05 0.75 6.13 -51.93 -0.32 0.43 16
45 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16
46 H 0.09 0.70 5.98 -51.93 -0.31 0.39 16
47 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16
48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
51 H 0.08 0.58 6.32 -51.93 -0.33 0.25 16
LS Contribution 380.47 15.07 5.73 5.73
Total: -1.00 -31.85 380.47 -9.20 -41.05
By element:
Atomic # 1 Polarization: 10.44 SS G_CDS: -8.18 Total: 2.26 kcal
Atomic # 6 Polarization: 8.58 SS G_CDS: -0.15 Total: 8.43 kcal
Atomic # 7 Polarization: -48.93 SS G_CDS: -0.45 Total: -49.39 kcal
Atomic # 8 Polarization: -22.76 SS G_CDS: -1.12 Total: -23.89 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.80 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -31.85 -9.20 -41.05 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972488010.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.122 kcal
(2) G-P(sol) polarization free energy of solvation -31.853 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds