Wall clock time and date at job start Tue Mar 31 2020 21:51:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42907 * 113.99937 * 2 1
4 4 H 1.09000 * 109.46852 * 29.99697 * 3 2 1
5 5 C 1.50703 * 109.47112 * 149.99774 * 3 2 1
6 6 O 1.21274 * 120.00288 * 21.99674 * 5 3 2
7 7 N 1.34778 * 119.99928 * 202.00151 * 5 3 2
8 8 C 1.47490 * 125.66286 * 355.36178 * 7 5 3
9 9 C 1.55021 * 104.89254 * 156.02068 * 8 7 5
10 10 C 1.54519 * 101.53082 * 36.38021 * 9 8 7
11 11 C 1.47185 * 125.66521 * 175.40923 * 7 5 3
12 12 C 1.52518 * 110.04984 * 206.90511 * 10 9 8
13 13 N 1.47318 * 108.39771 * 287.92446 * 12 10 9
14 14 C 1.36937 * 121.06295 * 130.60022 * 13 12 10
15 15 H 1.07994 * 119.99933 * 210.80512 * 14 13 12
16 16 C 1.38816 * 119.99874 * 30.80237 * 14 13 12
17 17 N 1.31615 * 119.99726 * 11.22752 * 16 14 13
18 18 Si 1.86801 * 120.00032 * 191.23137 * 16 14 13
19 19 H 1.48498 * 109.47320 * 59.99795 * 18 16 14
20 20 H 1.48493 * 109.47171 * 179.97438 * 18 16 14
21 21 H 1.48505 * 109.46801 * 300.00114 * 18 16 14
22 22 C 1.47164 * 117.87568 * 310.62387 * 13 12 10
23 23 C 1.53278 * 108.55589 * 51.10619 * 22 13 12
24 24 O 1.42066 * 110.32805 * 83.93750 * 10 9 8
25 25 C 1.53000 * 109.47065 * 269.99670 * 3 2 1
26 26 C 1.53784 * 113.61213 * 157.55435 * 25 3 2
27 27 C 1.53958 * 87.01569 * 220.04813 * 26 25 3
28 28 C 1.53779 * 87.11270 * 25.36449 * 27 26 25
29 29 H 1.08991 * 109.47341 * 300.00529 * 1 2 3
30 30 H 1.09004 * 109.46820 * 60.00012 * 1 2 3
31 31 H 1.09002 * 109.46687 * 179.97438 * 1 2 3
32 32 H 1.09004 * 110.35209 * 37.16866 * 8 7 5
33 33 H 1.08997 * 110.44744 * 274.92650 * 8 7 5
34 34 H 1.09003 * 111.01242 * 154.44313 * 9 8 7
35 35 H 1.09000 * 111.01838 * 278.31759 * 9 8 7
36 36 H 1.08993 * 109.90591 * 300.83942 * 11 7 5
37 37 H 1.09007 * 109.90585 * 61.91219 * 11 7 5
38 38 H 1.08993 * 109.68488 * 47.64966 * 12 10 9
39 39 H 1.08999 * 109.67922 * 168.20246 * 12 10 9
40 40 H 0.97004 * 119.99831 * 179.97438 * 17 16 14
41 41 H 1.09000 * 109.62283 * 291.38795 * 22 13 12
42 42 H 1.08995 * 109.77812 * 170.91544 * 22 13 12
43 43 H 1.08999 * 109.51467 * 187.19044 * 23 22 13
44 44 H 1.09006 * 109.51182 * 67.04117 * 23 22 13
45 45 H 1.08993 * 112.85193 * 288.74962 * 25 3 2
46 46 H 1.09001 * 113.61604 * 334.56164 * 26 25 3
47 47 H 1.08999 * 113.61544 * 105.47360 * 26 25 3
48 48 H 1.08995 * 113.53830 * 270.80815 * 27 26 25
49 49 H 1.09005 * 113.73933 * 139.94732 * 27 26 25
50 50 H 1.08998 * 113.61418 * 220.09001 * 28 27 26
51 51 H 1.08996 * 113.69200 * 89.19821 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3449 1.9994 0.5138
5 6 3.3386 1.2640 0.7105
6 8 3.9362 0.2142 0.8180
7 7 3.8625 2.3935 1.2265
8 6 3.2944 3.7473 1.0856
9 6 3.8508 4.5407 2.2956
10 6 5.2750 3.9544 2.4209
11 6 5.0969 2.4810 2.0232
12 6 5.7613 4.0655 3.8622
13 7 6.0535 5.4812 4.1465
14 6 5.5606 6.0929 5.2681
15 1 5.3346 7.1488 5.2521
16 6 5.3515 5.3558 6.4257
17 7 5.8268 4.1322 6.5214
18 14 4.3956 6.1005 7.8473
19 1 3.0260 6.4513 7.3931
20 1 4.3119 5.1169 8.9567
21 1 5.0885 7.3252 8.3221
22 6 6.8915 6.2171 3.1864
23 6 6.3138 6.0166 1.7809
24 8 6.1612 4.6161 1.5293
25 6 2.2177 1.7714 -1.4425
26 6 2.3092 3.2995 -1.5892
27 6 1.4679 3.1463 -2.8695
28 6 0.9165 1.8472 -2.2585
29 1 -0.3633 0.5139 0.8898
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 2.2059 3.7078 1.1263
33 1 3.6219 4.2023 0.1509
34 1 3.8853 5.6087 2.0803
35 1 3.2665 4.3435 3.1944
36 1 5.0063 1.8637 2.9169
37 1 5.9474 2.1490 1.4276
38 1 4.9862 3.7075 4.5398
39 1 6.6657 3.4710 3.9913
40 1 5.6810 3.6172 7.3304
41 1 7.9111 5.8333 3.2211
42 1 6.8912 7.2784 3.4343
43 1 6.9916 6.4472 1.0438
44 1 5.3424 6.5066 1.7132
45 1 3.0202 1.2354 -1.9491
46 1 1.8000 3.8456 -0.7950
47 1 3.3212 3.6609 -1.7713
48 1 2.0658 2.9874 -3.7668
49 1 0.7144 3.9239 -2.9951
50 1 0.8059 1.0379 -2.9802
51 1 0.0259 1.9941 -1.6476
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000972488010.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:51:59
Heat of formation + Delta-G solvation = -78.750977 kcal
Electronic energy + Delta-G solvation = -31951.792932 eV
Core-core repulsion = 27852.727253 eV
Total energy + Delta-G solvation = -4099.065679 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.92886 -40.78891 -39.40090 -38.04391 -37.35625 -36.24312 -33.28215 -33.06765
-30.94791 -30.77071 -29.04425 -27.57616 -27.23234 -26.46272 -25.36224 -24.65014
-23.64104 -22.91436 -20.78208 -20.45073 -20.22689 -18.96465 -18.56480 -17.91315
-17.35997 -17.19560 -16.77174 -16.62451 -16.24413 -16.13271 -15.85643 -15.74604
-15.27708 -15.24235 -14.82638 -14.54001 -14.44835 -14.24722 -13.93588 -13.67628
-13.58306 -13.39756 -13.10602 -12.93911 -12.85992 -12.76210 -12.65036 -12.49588
-12.48676 -12.28445 -12.18931 -11.92667 -11.86081 -11.77801 -11.42725 -11.19853
-11.15205 -10.91985 -10.73351 -10.49212 -10.29346 -9.77276 -8.66391 -7.89117
-5.41763 1.41680 1.48035 1.48837 1.56272 1.62311 2.47889 2.74992
2.85105 3.22850 3.28551 3.45912 3.54852 3.64864 3.68776 3.83894
3.87501 3.93371 3.99437 4.09112 4.23519 4.30791 4.32828 4.39070
4.49885 4.51117 4.51851 4.54335 4.59905 4.69288 4.76849 4.78833
4.82424 4.89526 4.91956 4.95259 5.04798 5.05673 5.10962 5.12798
5.14163 5.16260 5.26588 5.27514 5.51085 5.55550 5.62147 6.05001
6.32203 6.37199 6.44624 7.01437 7.07719 7.75078 8.32278 9.16715
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.014845 B = 0.003354 C = 0.003106
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1885.756895 B = 8346.994265 C = 9011.218735
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.393 6.393
3 C 0.097 3.903
4 H 0.108 0.892
5 C 0.522 3.478
6 O -0.580 6.580
7 N -0.606 5.606
8 C 0.102 3.898
9 C -0.139 4.139
10 C 0.097 3.903
11 C 0.130 3.870
12 C 0.178 3.822
13 N -0.607 5.607
14 C -0.261 4.261
15 H 0.076 0.924
16 C -0.046 4.046
17 N -0.939 5.939
18 Si 0.968 3.032
19 H -0.271 1.271
20 H -0.300 1.300
21 H -0.275 1.275
22 C 0.102 3.898
23 C 0.052 3.948
24 O -0.382 6.382
25 C -0.132 4.132
26 C -0.140 4.140
27 C -0.131 4.131
28 C -0.126 4.126
29 H 0.051 0.949
30 H 0.074 0.926
31 H 0.096 0.904
32 H 0.105 0.895
33 H 0.098 0.902
34 H 0.102 0.898
35 H 0.070 0.930
36 H 0.062 0.938
37 H 0.064 0.936
38 H 0.063 0.937
39 H -0.012 1.012
40 H 0.249 0.751
41 H 0.010 0.990
42 H 0.076 0.924
43 H 0.119 0.881
44 H 0.067 0.933
45 H 0.076 0.924
46 H 0.104 0.896
47 H 0.068 0.932
48 H 0.080 0.920
49 H 0.088 0.912
50 H 0.071 0.929
51 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.799 2.230 -18.847 23.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 O -0.311 6.311
3 C 0.036 3.964
4 H 0.125 0.875
5 C 0.311 3.689
6 O -0.459 6.459
7 N -0.341 5.341
8 C -0.019 4.019
9 C -0.177 4.177
10 C 0.055 3.945
11 C 0.006 3.994
12 C 0.052 3.948
13 N -0.331 5.331
14 C -0.390 4.390
15 H 0.093 0.907
16 C -0.242 4.242
17 N -0.585 5.585
18 Si 0.796 3.204
19 H -0.196 1.196
20 H -0.226 1.226
21 H -0.201 1.201
22 C -0.024 4.024
23 C -0.025 4.025
24 O -0.301 6.301
25 C -0.152 4.152
26 C -0.177 4.177
27 C -0.168 4.168
28 C -0.163 4.163
29 H 0.070 0.930
30 H 0.092 0.908
31 H 0.115 0.885
32 H 0.123 0.877
33 H 0.116 0.884
34 H 0.120 0.880
35 H 0.089 0.911
36 H 0.081 0.919
37 H 0.082 0.918
38 H 0.082 0.918
39 H 0.006 0.994
40 H 0.058 0.942
41 H 0.028 0.972
42 H 0.094 0.906
43 H 0.137 0.863
44 H 0.085 0.915
45 H 0.094 0.906
46 H 0.122 0.878
47 H 0.087 0.913
48 H 0.098 0.902
49 H 0.107 0.893
50 H 0.090 0.910
51 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -13.330 1.253 -18.831 23.106
hybrid contribution 0.253 -0.055 1.778 1.796
sum -13.077 1.198 -17.054 21.524
Atomic orbital electron populations
1.23326 0.78588 1.04417 1.01922 1.87988 1.22051 1.25960 1.95123
1.21985 0.91026 0.86884 0.96507 0.87469 1.20875 0.88018 0.81791
0.78214 1.90672 1.63468 1.31653 1.60084 1.48542 1.25322 1.08147
1.52044 1.22931 0.99543 0.80119 0.99288 1.23125 0.94770 1.01426
0.98363 1.22251 0.90642 0.90665 0.90896 1.21537 0.87572 0.95235
0.95033 1.20843 0.97250 0.85614 0.91137 1.44247 1.57255 1.07948
1.23697 1.19468 1.36269 0.94678 0.88630 0.90669 1.25945 1.01182
0.97393 0.99679 1.70148 1.48356 1.11897 1.28052 0.85331 0.79149
0.77268 0.78626 1.19648 1.22644 1.20077 1.21816 0.92806 0.97109
0.90623 1.23212 1.01463 0.81028 0.96750 1.87685 1.65494 1.22821
1.54145 1.23013 1.01069 0.98271 0.92824 1.23315 1.01432 0.93229
0.99714 1.22803 0.99556 0.97716 0.96775 1.23014 0.95760 0.98809
0.98762 0.92996 0.90781 0.88534 0.87709 0.88401 0.87996 0.91108
0.91940 0.91753 0.91818 0.99356 0.94151 0.97218 0.90579 0.86295
0.91540 0.90557 0.87777 0.91324 0.90159 0.89336 0.90975 0.88115
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.20 10.57 113.37 1.20 1.40 16
2 O -0.39 -10.41 9.93 -130.94 -1.30 -11.71 16
3 C 0.10 2.29 2.00 29.85 0.06 2.35 16
4 H 0.11 1.90 6.35 -2.39 -0.02 1.89 16
5 C 0.52 17.45 7.08 87.66 0.62 18.07 16
6 O -0.58 -25.31 16.97 15.03 0.26 -25.05 16
7 N -0.61 -18.93 3.33 -812.31 -2.71 -21.64 16
8 C 0.10 2.37 4.87 86.88 0.42 2.79 16
9 C -0.14 -4.18 5.91 31.80 0.19 -4.00 16
10 C 0.10 3.62 0.83 -10.22 -0.01 3.61 16
11 C 0.13 4.87 6.24 86.47 0.54 5.41 16
12 C 0.18 8.53 3.88 86.06 0.33 8.87 16
13 N -0.61 -29.15 2.93 -698.63 -2.05 -31.20 16
14 C -0.26 -13.52 9.64 84.03 0.81 -12.71 16
15 H 0.08 3.70 7.85 -2.91 -0.02 3.68 16
16 C -0.05 -2.50 5.05 84.86 0.43 -2.07 16
17 N -0.94 -54.98 11.17 21.65 0.24 -54.73 16
18 Si 0.97 43.14 29.57 68.60 2.03 45.17 16
19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16
20 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16
21 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16
22 C 0.10 3.97 6.71 86.35 0.58 4.55 16
23 C 0.05 1.60 6.76 72.08 0.49 2.09 16
24 O -0.38 -13.59 10.23 -148.97 -1.52 -15.11 16
25 C -0.13 -2.48 3.33 -10.27 -0.03 -2.52 16
26 C -0.14 -1.93 5.41 31.18 0.17 -1.76 16
27 C -0.13 -1.40 8.09 31.18 0.25 -1.15 16
28 C -0.13 -1.55 6.18 31.12 0.19 -1.36 16
29 H 0.05 0.71 8.08 -2.39 -0.02 0.69 16
30 H 0.07 0.80 4.94 -2.38 -0.01 0.79 16
31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16
32 H 0.10 1.74 5.95 -2.38 -0.01 1.72 16
33 H 0.10 1.94 6.08 -2.39 -0.01 1.93 16
34 H 0.10 2.83 5.98 -2.39 -0.01 2.81 16
35 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16
36 H 0.06 2.59 7.79 -2.39 -0.02 2.57 16
37 H 0.06 2.53 8.07 -2.38 -0.02 2.51 16
38 H 0.06 3.41 6.18 -2.39 -0.01 3.40 16
39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16
40 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16
41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16
42 H 0.08 2.73 7.96 -2.39 -0.02 2.71 16
43 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16
44 H 0.07 1.82 6.13 -2.38 -0.01 1.81 16
45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
46 H 0.10 1.11 5.98 -2.39 -0.01 1.09 16
47 H 0.07 1.07 7.48 -2.39 -0.02 1.06 16
48 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
49 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16
50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
51 H 0.10 0.90 6.32 -2.39 -0.02 0.89 16
Total: -1.00 -74.21 380.47 2.12 -72.09
By element:
Atomic # 1 Polarization: 17.67 SS G_CDS: 0.93 Total: 18.60 kcal
Atomic # 6 Polarization: 17.35 SS G_CDS: 6.24 Total: 23.59 kcal
Atomic # 7 Polarization: -103.06 SS G_CDS: -4.51 Total: -107.57 kcal
Atomic # 8 Polarization: -49.31 SS G_CDS: -2.57 Total: -51.88 kcal
Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal
Total: -74.21 2.12 -72.09 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972488010.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.664 kcal
(2) G-P(sol) polarization free energy of solvation -74.206 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.870 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds