Wall clock time and date at job start Tue Mar 31 2020 21:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99886 * 2 1 4 4 H 1.08993 * 109.47105 * 30.00532 * 3 2 1 5 5 C 1.50699 * 109.47160 * 270.00046 * 3 2 1 6 6 O 1.21276 * 120.00364 * 349.62528 * 5 3 2 7 7 N 1.34777 * 120.00007 * 169.62483 * 5 3 2 8 8 C 1.47489 * 125.66018 * 4.56895 * 7 5 3 9 9 C 1.55253 * 104.78355 * 155.91454 * 8 7 5 10 10 C 1.54514 * 101.42723 * 36.67566 * 9 8 7 11 11 C 1.47184 * 125.66821 * 184.87622 * 7 5 3 12 12 C 1.52519 * 110.05872 * 206.73996 * 10 9 8 13 13 N 1.47299 * 108.41022 * 287.85321 * 12 10 9 14 14 C 1.36942 * 121.06120 * 130.61284 * 13 12 10 15 15 H 1.08001 * 119.99626 * 205.49277 * 14 13 12 16 16 C 1.38809 * 120.00401 * 25.48038 * 14 13 12 17 17 N 1.31622 * 119.99689 * 14.93573 * 16 14 13 18 18 Si 1.86797 * 120.00278 * 194.92910 * 16 14 13 19 19 H 1.48497 * 109.47224 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47071 * 120.00633 * 18 16 14 21 21 H 1.48502 * 109.47286 * 240.00223 * 18 16 14 22 22 C 1.47158 * 117.87654 * 310.62750 * 13 12 10 23 23 C 1.53287 * 108.54061 * 51.14099 * 22 13 12 24 24 O 1.42062 * 110.33924 * 83.75435 * 10 9 8 25 25 C 1.52999 * 109.46652 * 150.00281 * 3 2 1 26 26 C 1.53788 * 113.61779 * 32.32422 * 25 3 2 27 27 C 1.53784 * 87.08158 * 220.01763 * 26 25 3 28 28 C 1.53781 * 113.61557 * 294.82431 * 25 3 2 29 29 H 1.08998 * 109.46371 * 299.99707 * 1 2 3 30 30 H 1.08996 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47117 * 59.99436 * 1 2 3 32 32 H 1.09007 * 110.35264 * 274.86505 * 8 7 5 33 33 H 1.09001 * 110.35489 * 37.15292 * 8 7 5 34 34 H 1.09005 * 111.21409 * 278.58223 * 9 8 7 35 35 H 1.08999 * 110.90863 * 154.63729 * 9 8 7 36 36 H 1.09001 * 109.90669 * 300.84613 * 11 7 5 37 37 H 1.09003 * 109.90785 * 61.91619 * 11 7 5 38 38 H 1.09006 * 109.67590 * 47.58268 * 12 10 9 39 39 H 1.08997 * 109.68052 * 168.12098 * 12 10 9 40 40 H 0.96998 * 120.00024 * 179.97438 * 17 16 14 41 41 H 1.08992 * 109.62856 * 291.42235 * 22 13 12 42 42 H 1.09008 * 109.78075 * 170.94429 * 22 13 12 43 43 H 1.08996 * 109.51064 * 187.15906 * 23 22 13 44 44 H 1.08999 * 109.51114 * 66.99802 * 23 22 13 45 45 H 1.09006 * 112.84892 * 163.62589 * 25 3 2 46 46 H 1.08996 * 113.60901 * 334.56997 * 26 25 3 47 47 H 1.08998 * 113.61010 * 105.46755 * 26 25 3 48 48 H 1.08999 * 113.61133 * 270.88427 * 27 26 25 49 49 H 1.08991 * 113.61151 * 139.97941 * 27 26 25 50 50 H 1.08997 * 113.61830 * 254.52949 * 28 25 3 51 51 H 1.08996 * 113.61181 * 25.35220 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 2.0734 0.9824 -2.3369 7 7 2.5541 3.0440 -1.6734 8 6 2.8499 4.0717 -0.6577 9 6 3.7486 5.1047 -1.3894 10 6 3.1235 5.1078 -2.8025 11 6 2.6852 3.6496 -3.0085 12 6 4.1716 5.5034 -3.8374 13 7 4.4494 6.9426 -3.6915 14 6 5.7341 7.4093 -3.6085 15 1 5.9375 8.3448 -3.1084 16 6 6.7750 6.6802 -4.1668 17 7 6.5165 5.7104 -5.0183 18 14 8.5426 7.0754 -3.7099 19 1 8.5636 8.2000 -2.7403 20 1 9.1739 5.8803 -3.0949 21 1 9.2954 7.4598 -4.9308 22 6 3.3023 7.8627 -3.6375 23 6 2.3184 7.3535 -2.5780 24 8 2.0054 5.9832 -2.8459 25 6 3.3589 1.2632 0.7212 26 6 4.1035 -0.0725 0.5575 27 6 4.5038 0.0596 2.0365 28 6 3.2470 0.9272 2.2177 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.9284 4.5425 -0.3152 33 1 3.3865 3.6309 0.1825 34 1 4.7862 4.7721 -1.4217 35 1 3.6692 6.0875 -0.9247 36 1 3.4381 3.1139 -3.5867 37 1 1.7268 3.6167 -3.5267 38 1 5.0861 4.9342 -3.6697 39 1 3.7924 5.3025 -4.8393 40 1 7.2438 5.2011 -5.4087 41 1 2.8104 7.8922 -4.6097 42 1 3.6437 8.8627 -3.3695 43 1 1.4061 7.9489 -2.6124 44 1 2.7717 7.4371 -1.5903 45 1 3.9769 2.1371 0.5149 46 1 3.4451 -0.9176 0.3571 47 1 4.9479 -0.0201 -0.1297 48 1 5.4358 0.6037 2.1896 49 1 4.4671 -0.8819 2.5844 50 1 3.4001 1.7863 2.8708 51 1 2.3537 0.3565 2.4714 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972488011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:03 Heat of formation + Delta-G solvation = -60.893961 kcal Electronic energy + Delta-G solvation = -31885.211083 eV Core-core repulsion = 27786.919743 eV Total energy + Delta-G solvation = -4098.291340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.66869 -39.52551 -38.16541 -37.02520 -35.95373 -34.50489 -31.78826 -31.28937 -29.77095 -29.49789 -27.44569 -26.53184 -25.76007 -25.46504 -24.01600 -23.39406 -22.43968 -21.34160 -19.64517 -19.34044 -18.82748 -17.38161 -17.13578 -16.68611 -16.39428 -15.83020 -15.50275 -15.29296 -15.09466 -14.72352 -14.43467 -14.24950 -14.11086 -13.70202 -13.51277 -13.41215 -13.05750 -12.77193 -12.67342 -12.50093 -12.33533 -12.18851 -12.08418 -11.90089 -11.57300 -11.37885 -11.13736 -11.02945 -10.91181 -10.74984 -10.67324 -10.61630 -10.46255 -10.32463 -10.28442 -10.23649 -9.99267 -9.59121 -9.24101 -9.04170 -8.58575 -8.45671 -6.79971 -5.88146 -3.32109 2.70026 2.95822 3.30400 3.38420 3.40261 3.62332 4.16684 4.27985 4.38637 4.50349 4.53159 4.69449 4.73931 4.83615 4.96265 5.05383 5.07320 5.22670 5.23132 5.32570 5.33735 5.40974 5.46813 5.53238 5.56473 5.60677 5.72582 5.74246 5.76423 5.77783 5.81929 5.94935 5.98463 6.03943 6.08740 6.13144 6.25226 6.30481 6.42068 6.44407 6.47691 6.59482 6.74425 6.88190 7.03810 7.43078 7.65998 7.66556 7.87899 8.27763 8.29782 9.06410 9.69194 10.25970 11.19878 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.003555 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.529474 B = 7874.461034 C = 8924.987307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.090 3.910 4 H 0.084 0.916 5 C 0.505 3.495 6 O -0.528 6.528 7 N -0.612 5.612 8 C 0.093 3.907 9 C -0.143 4.143 10 C 0.086 3.914 11 C 0.126 3.874 12 C 0.163 3.837 13 N -0.593 5.593 14 C -0.252 4.252 15 H 0.070 0.930 16 C 0.003 3.997 17 N -0.904 5.904 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.378 6.378 25 C -0.116 4.116 26 C -0.126 4.126 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.029 0.971 40 H 0.255 0.745 41 H 0.026 0.974 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.048 0.952 45 H 0.110 0.890 46 H 0.096 0.904 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 -6.613 14.986 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.028 3.972 4 H 0.101 0.899 5 C 0.293 3.707 6 O -0.404 6.404 7 N -0.348 5.348 8 C -0.029 4.029 9 C -0.181 4.181 10 C 0.044 3.956 11 C 0.004 3.996 12 C 0.036 3.964 13 N -0.317 5.317 14 C -0.381 4.381 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.216 1.216 22 C -0.018 4.018 23 C -0.032 4.032 24 O -0.297 6.297 25 C -0.135 4.135 26 C -0.163 4.163 27 C -0.179 4.179 28 C -0.166 4.166 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.127 0.873 46 H 0.115 0.885 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.638 -7.460 14.376 18.847 hybrid contribution 0.900 0.729 0.062 1.160 sum -8.739 -6.730 14.438 18.169 Atomic orbital electron populations 1.22854 0.80925 1.03051 0.99974 1.87960 1.19670 1.24976 1.94359 1.21793 0.96881 0.86335 0.92160 0.89855 1.20941 0.77319 0.80469 0.92016 1.90700 1.50789 1.52395 1.46553 1.48642 1.68264 1.09337 1.08549 1.22643 0.99309 0.89360 0.91633 1.23223 0.99592 0.99033 0.96250 1.22650 0.88174 0.88260 0.96503 1.21782 1.02291 0.91330 0.84242 1.21246 0.95857 0.85986 0.93287 1.44080 1.01202 1.00532 1.85867 1.19216 0.82308 1.06940 1.29685 0.91262 1.25035 0.98382 0.99395 0.96764 1.69993 1.30990 1.24187 1.29638 0.86207 0.84868 0.77731 0.77883 1.20247 1.21479 1.21612 1.21584 0.89602 0.94431 0.96147 1.23104 0.99033 0.82379 0.98656 1.87666 1.32416 1.17574 1.92045 1.22858 0.93993 1.00527 0.96078 1.22810 0.99770 0.97418 0.96332 1.22794 0.97734 1.00150 0.97226 1.22902 0.99041 1.00000 0.94664 0.94057 0.89280 0.93766 0.91419 0.90607 0.89415 0.89337 0.89654 0.90859 0.88071 0.95331 0.93436 0.95587 0.91914 0.89951 0.93388 0.87266 0.88536 0.91585 0.90229 0.91409 0.91368 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.81 101.05 1.09 1.38 16 2 O -0.35 -4.53 8.09 -54.92 -0.44 -4.97 16 3 C 0.09 1.11 1.93 -27.88 -0.05 1.06 16 4 H 0.08 0.86 7.72 -51.93 -0.40 0.46 16 5 C 0.51 8.19 7.14 -10.99 -0.08 8.11 16 6 O -0.53 -10.63 16.87 -14.13 -0.24 -10.86 16 7 N -0.61 -9.66 3.33 -170.53 -0.57 -10.23 16 8 C 0.09 1.23 6.49 -2.31 -0.01 1.22 16 9 C -0.14 -2.31 5.93 -24.74 -0.15 -2.45 16 10 C 0.09 1.59 0.83 -89.73 -0.07 1.52 16 11 C 0.13 2.27 6.24 -3.33 -0.02 2.25 16 12 C 0.16 3.73 3.94 -3.85 -0.02 3.71 16 13 N -0.59 -14.08 2.95 -172.18 -0.51 -14.59 16 14 C -0.25 -6.54 9.68 -15.06 -0.15 -6.68 16 15 H 0.07 1.76 7.87 -52.49 -0.41 1.34 16 16 C 0.00 0.08 5.01 -17.43 -0.09 -0.01 16 17 N -0.90 -25.32 10.99 55.49 0.61 -24.71 16 18 Si 0.90 20.87 29.58 -169.99 -5.03 15.84 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.11 2.16 6.71 -3.53 -0.02 2.14 16 23 C 0.05 0.77 6.76 37.31 0.25 1.02 16 24 O -0.38 -6.97 10.22 -35.23 -0.36 -7.33 16 25 C -0.12 -1.27 3.13 -89.80 -0.28 -1.55 16 26 C -0.13 -1.44 7.47 -25.91 -0.19 -1.63 16 27 C -0.14 -1.28 8.08 -25.91 -0.21 -1.49 16 28 C -0.13 -1.12 7.57 -25.91 -0.20 -1.32 16 29 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.08 0.83 5.13 -51.93 -0.27 0.56 16 34 H 0.09 1.53 7.86 -51.93 -0.41 1.12 16 35 H 0.09 1.40 5.98 -51.93 -0.31 1.09 16 36 H 0.09 1.64 7.79 -51.93 -0.40 1.24 16 37 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 38 H 0.10 2.57 5.88 -51.93 -0.31 2.27 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.17 7.96 -51.92 -0.41 0.76 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.76 6.14 -51.93 -0.32 0.44 16 45 H 0.11 1.20 5.63 -51.93 -0.29 0.91 16 46 H 0.10 1.20 6.84 -51.93 -0.36 0.85 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.08 0.73 7.96 -51.93 -0.41 0.31 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -31.25 389.72 -9.36 -40.62 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.50 Total: 3.09 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.20 Total: 7.27 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.47 Total: -49.52 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.04 Total: -23.17 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.25 -9.36 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972488011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.275 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds