Wall clock time and date at job start Tue Mar 31 2020 21:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99737 * 2 1 4 4 H 1.09002 * 109.47116 * 29.99850 * 3 2 1 5 5 C 1.50700 * 109.47166 * 150.00268 * 3 2 1 6 6 O 1.21277 * 120.00158 * 25.78304 * 5 3 2 7 7 N 1.34777 * 119.99567 * 205.79281 * 5 3 2 8 8 C 1.47078 * 125.63319 * 354.81501 * 7 5 3 9 9 C 1.54458 * 107.30000 * 179.00124 * 8 7 5 10 10 C 1.54379 * 102.86750 * 338.50078 * 9 8 7 11 11 C 1.47580 * 125.62411 * 174.79612 * 7 5 3 12 12 C 1.52368 * 110.37883 * 152.41195 * 10 9 8 13 13 N 1.47330 * 108.43376 * 73.37645 * 12 10 9 14 14 C 1.36934 * 121.07622 * 229.15868 * 13 12 10 15 15 H 1.08008 * 120.00435 * 147.83260 * 14 13 12 16 16 C 1.38815 * 120.00425 * 327.84076 * 14 13 12 17 17 N 1.31613 * 120.00509 * 167.04726 * 16 14 13 18 18 Si 1.86806 * 119.99561 * 347.04226 * 16 14 13 19 19 H 1.48502 * 109.46592 * 85.32979 * 18 16 14 20 20 H 1.48491 * 109.47156 * 205.33189 * 18 16 14 21 21 H 1.48504 * 109.47253 * 325.33621 * 18 16 14 22 22 C 1.47246 * 117.80229 * 49.15999 * 13 12 10 23 23 C 1.53281 * 108.58623 * 308.79897 * 22 13 12 24 24 O 1.41876 * 110.71432 * 276.30372 * 10 9 8 25 25 C 1.53006 * 109.46815 * 270.00014 * 3 2 1 26 26 C 1.53786 * 113.61259 * 154.71041 * 25 3 2 27 27 C 1.53782 * 87.08035 * 220.01709 * 26 25 3 28 28 C 1.53780 * 113.61623 * 57.21341 * 25 3 2 29 29 H 1.09007 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47386 * 300.00054 * 1 2 3 31 31 H 1.09004 * 109.47552 * 60.00553 * 1 2 3 32 32 H 1.09001 * 109.88108 * 59.57530 * 8 7 5 33 33 H 1.09005 * 109.87875 * 298.42970 * 8 7 5 34 34 H 1.08996 * 110.73719 * 220.15637 * 9 8 7 35 35 H 1.09007 * 110.88799 * 96.91416 * 9 8 7 36 36 H 1.09000 * 110.37415 * 84.49889 * 11 7 5 37 37 H 1.08994 * 110.37412 * 322.14566 * 11 7 5 38 38 H 1.09000 * 109.67197 * 193.11865 * 12 10 9 39 39 H 1.08999 * 109.67519 * 313.62802 * 12 10 9 40 40 H 0.97004 * 120.00175 * 179.97438 * 17 16 14 41 41 H 1.08988 * 109.60840 * 189.06489 * 22 13 12 42 42 H 1.09004 * 109.76134 * 68.61731 * 22 13 12 43 43 H 1.09000 * 109.50894 * 293.06911 * 23 22 13 44 44 H 1.08996 * 109.51120 * 172.91680 * 23 22 13 45 45 H 1.09001 * 112.84658 * 286.01197 * 25 3 2 46 46 H 1.09000 * 113.61312 * 334.56144 * 26 25 3 47 47 H 1.08997 * 113.61389 * 105.46659 * 26 25 3 48 48 H 1.08995 * 113.61169 * 270.88743 * 27 26 25 49 49 H 1.08997 * 113.61502 * 139.97789 * 27 26 25 50 50 H 1.09007 * 113.61071 * 254.52941 * 28 25 3 51 51 H 1.08994 * 113.61559 * 25.34190 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 3.3386 1.2640 0.7103 6 8 3.9686 0.2288 0.7582 7 7 3.8263 2.3773 1.2927 8 6 3.2235 3.7169 1.2198 9 6 4.1113 4.6662 2.0543 10 6 4.8588 3.6982 2.9964 11 6 5.0534 2.4533 2.1090 12 6 6.2064 4.2844 3.3989 13 7 5.9712 5.3766 4.3593 14 6 6.5627 6.6007 4.1964 15 1 6.0522 7.4950 4.5224 16 6 7.8186 6.6926 3.6121 17 7 8.2791 7.8622 3.2223 18 14 8.8549 5.1559 3.3792 19 1 8.4757 4.4914 2.1065 20 1 10.2913 5.5298 3.3337 21 1 8.6214 4.2249 4.5124 22 6 5.0793 5.1080 5.4998 23 6 3.7698 4.5157 4.9669 24 8 4.0663 3.3913 4.1324 25 6 2.2175 1.7714 -1.4426 26 6 2.2396 3.3012 -1.5987 27 6 1.4276 3.1024 -2.8895 28 6 0.9263 1.7835 -2.2777 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2154 3.6928 1.6337 33 1 3.1927 4.0536 0.1835 34 1 3.4994 5.3645 2.6252 35 1 4.8134 5.2029 1.4163 36 1 5.9276 2.5759 1.4697 37 1 5.1551 1.5601 2.7254 38 1 6.8184 3.5118 3.8643 39 1 6.7151 4.6741 2.5172 40 1 9.1569 7.9264 2.8143 41 1 4.8718 6.0381 6.0287 42 1 5.5525 4.3985 6.1786 43 1 3.2387 5.2700 4.3863 44 1 3.1486 4.1948 5.8031 45 1 3.0507 1.2689 -1.9339 46 1 1.6935 3.8278 -0.8161 47 1 3.2363 3.7084 -1.7682 48 1 2.0452 2.9650 -3.7770 49 1 0.6421 3.8449 -3.0299 50 1 0.8628 0.9655 -2.9954 51 1 0.0212 1.8938 -1.6806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972488013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:11 Heat of formation + Delta-G solvation = -51.118434 kcal Electronic energy + Delta-G solvation = -32020.752034 eV Core-core repulsion = 27922.884592 eV Total energy + Delta-G solvation = -4097.867442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.86288 -39.77336 -38.35992 -37.17433 -36.16169 -34.70526 -31.97626 -31.65407 -29.90085 -29.85493 -27.84877 -26.77589 -26.08655 -25.68437 -23.90381 -23.72909 -22.65357 -21.26214 -19.98292 -19.55468 -19.06241 -17.55828 -17.29762 -16.71229 -16.62899 -16.22137 -15.76994 -15.34367 -15.17480 -15.04938 -14.75969 -14.26556 -14.12516 -13.91000 -13.85142 -13.72280 -13.18304 -12.97871 -12.69756 -12.57595 -12.50743 -12.45165 -12.23158 -12.12684 -11.83832 -11.76374 -11.56524 -11.25780 -11.18496 -11.04405 -10.85407 -10.77494 -10.53431 -10.45413 -10.28601 -10.00992 -9.76886 -9.63601 -9.46124 -9.30068 -8.66229 -8.55847 -7.01595 -6.05568 -3.50890 2.52963 2.74721 3.21505 3.41263 3.42894 3.67621 3.92796 4.17477 4.32209 4.36611 4.40906 4.48540 4.60984 4.64475 4.69090 4.80094 4.98044 5.05175 5.08211 5.09355 5.16514 5.23659 5.32282 5.34423 5.38498 5.48436 5.51930 5.53297 5.58961 5.60837 5.64015 5.68034 5.76469 5.79681 5.86414 5.90495 6.02512 6.08894 6.11379 6.15643 6.24617 6.33348 6.40872 6.43524 6.65073 6.82674 7.53245 7.63439 7.82823 8.19139 8.21366 8.76743 9.57204 9.95913 11.09982 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.003430 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.324169 B = 8161.097212 C = 8585.252041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.357 6.357 3 C 0.090 3.910 4 H 0.081 0.919 5 C 0.533 3.467 6 O -0.525 6.525 7 N -0.608 5.608 8 C 0.090 3.910 9 C -0.145 4.145 10 C 0.095 3.905 11 C 0.122 3.878 12 C 0.108 3.892 13 N -0.605 5.605 14 C -0.262 4.262 15 H 0.087 0.913 16 C 0.029 3.971 17 N -0.909 5.909 18 Si 0.886 3.114 19 H -0.285 1.285 20 H -0.301 1.301 21 H -0.270 1.270 22 C 0.112 3.888 23 C 0.044 3.956 24 O -0.369 6.369 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.139 4.139 28 C -0.135 4.135 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.085 0.915 40 H 0.265 0.735 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.445 -8.915 -8.622 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.275 6.275 3 C 0.028 3.972 4 H 0.099 0.901 5 C 0.320 3.680 6 O -0.400 6.400 7 N -0.343 5.343 8 C -0.032 4.032 9 C -0.183 4.183 10 C 0.053 3.947 11 C -0.001 4.001 12 C -0.018 4.018 13 N -0.331 5.331 14 C -0.390 4.390 15 H 0.105 0.895 16 C -0.171 4.171 17 N -0.552 5.552 18 Si 0.716 3.284 19 H -0.212 1.212 20 H -0.229 1.229 21 H -0.195 1.195 22 C -0.014 4.014 23 C -0.034 4.034 24 O -0.288 6.288 25 C -0.145 4.145 26 C -0.179 4.179 27 C -0.177 4.177 28 C -0.172 4.172 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.120 0.880 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.089 0.911 50 H 0.090 0.910 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.946 -9.782 -8.652 21.394 hybrid contribution 0.579 -0.221 -0.087 0.626 sum -16.367 -10.003 -8.739 21.078 Atomic orbital electron populations 1.23117 0.80904 1.03273 1.00466 1.88023 1.19478 1.25083 1.94891 1.21920 0.93233 0.86527 0.95503 0.90136 1.19920 0.86950 0.82408 0.78734 1.90705 1.59974 1.30223 1.59142 1.48421 1.26510 1.08276 1.51139 1.22493 0.97351 0.82206 1.01156 1.23047 0.99511 0.97446 0.98250 1.22360 0.93293 0.93222 0.85840 1.22130 0.87024 0.98711 0.92185 1.21834 0.93295 0.91608 0.95089 1.44345 1.55231 1.10697 1.22778 1.18858 0.98034 0.83238 1.38879 0.89537 1.25379 0.96414 0.96175 0.99132 1.69749 1.19471 1.23256 1.42692 0.86979 0.79430 0.83690 0.78257 1.21201 1.22897 1.19525 1.21649 0.90233 0.99210 0.90278 1.23149 0.97817 0.88875 0.93549 1.87685 1.71051 1.33611 1.36481 1.23015 1.00261 0.97015 0.94202 1.23182 1.01426 0.94871 0.98395 1.22814 0.99898 0.97547 0.97422 1.23014 0.96759 0.98361 0.99036 0.89282 0.93981 0.92884 0.91772 0.90194 0.89057 0.89080 0.89822 0.89507 0.94622 0.89671 0.92539 0.90881 0.95022 0.92995 0.89449 0.88042 0.89299 0.90503 0.89963 0.91085 0.90960 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.55 101.05 1.07 1.22 16 2 O -0.36 -4.68 9.94 -53.67 -0.53 -5.22 16 3 C 0.09 1.08 2.03 -27.88 -0.06 1.02 16 4 H 0.08 0.82 6.64 -51.93 -0.34 0.47 16 5 C 0.53 8.46 7.06 -10.99 -0.08 8.38 16 6 O -0.53 -10.47 16.99 -12.88 -0.22 -10.69 16 7 N -0.61 -9.10 3.33 -170.77 -0.57 -9.67 16 8 C 0.09 1.12 5.54 -2.96 -0.02 1.10 16 9 C -0.14 -2.18 5.87 -25.24 -0.15 -2.33 16 10 C 0.10 1.65 0.84 -89.64 -0.08 1.58 16 11 C 0.12 2.03 6.07 -2.87 -0.02 2.02 16 12 C 0.11 2.25 3.01 -3.91 -0.01 2.24 16 13 N -0.61 -13.60 2.71 -172.18 -0.47 -14.07 16 14 C -0.26 -6.90 10.11 -15.06 -0.15 -7.06 16 15 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16 16 C 0.03 0.79 5.34 -17.43 -0.09 0.70 16 17 N -0.91 -26.77 13.97 55.49 0.78 -25.99 16 18 Si 0.89 21.78 24.21 -169.99 -4.12 17.66 16 19 H -0.28 -6.62 6.43 56.52 0.36 -6.25 16 20 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 21 H -0.27 -6.64 6.60 56.52 0.37 -6.27 16 22 C 0.11 2.10 6.72 -3.49 -0.02 2.08 16 23 C 0.04 0.69 6.78 37.30 0.25 0.94 16 24 O -0.37 -6.49 10.28 -35.22 -0.36 -6.86 16 25 C -0.13 -1.26 3.36 -89.80 -0.30 -1.56 16 26 C -0.14 -1.17 5.41 -25.92 -0.14 -1.31 16 27 C -0.14 -0.98 8.08 -25.92 -0.21 -1.19 16 28 C -0.13 -1.02 6.26 -25.92 -0.16 -1.18 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.05 0.35 4.79 -51.93 -0.25 0.10 16 32 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.08 0.83 4.43 -51.93 -0.23 0.60 16 34 H 0.09 1.37 6.07 -51.93 -0.32 1.06 16 35 H 0.09 1.46 7.82 -51.92 -0.41 1.05 16 36 H 0.08 1.36 7.99 -51.93 -0.42 0.95 16 37 H 0.09 1.53 8.10 -51.93 -0.42 1.11 16 38 H 0.04 0.78 6.66 -51.93 -0.35 0.43 16 39 H 0.09 1.89 4.65 -51.93 -0.24 1.65 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 1.31 7.96 -51.94 -0.41 0.90 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.79 6.22 -51.93 -0.32 0.47 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.09 0.66 6.63 -51.93 -0.34 0.32 16 47 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 51 H 0.08 0.55 6.05 -51.93 -0.31 0.24 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -32.96 375.45 -8.16 -41.12 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.17 Total: 1.39 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.17 Total: 6.65 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.26 Total: -49.73 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -1.11 Total: -22.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.12 Total: 17.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.96 -8.16 -41.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972488013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.994 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds