Wall clock time and date at job start Tue Mar 31 2020 21:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99737 * 2 1 4 4 H 1.09002 * 109.47116 * 29.99850 * 3 2 1 5 5 C 1.50700 * 109.47166 * 150.00268 * 3 2 1 6 6 O 1.21277 * 120.00158 * 25.78304 * 5 3 2 7 7 N 1.34777 * 119.99567 * 205.79281 * 5 3 2 8 8 C 1.47078 * 125.63319 * 354.81501 * 7 5 3 9 9 C 1.54458 * 107.30000 * 179.00124 * 8 7 5 10 10 C 1.54379 * 102.86750 * 338.50078 * 9 8 7 11 11 C 1.47580 * 125.62411 * 174.79612 * 7 5 3 12 12 C 1.52368 * 110.37883 * 152.41195 * 10 9 8 13 13 N 1.47330 * 108.43376 * 73.37645 * 12 10 9 14 14 C 1.36934 * 121.07622 * 229.15868 * 13 12 10 15 15 H 1.08008 * 120.00435 * 147.83260 * 14 13 12 16 16 C 1.38815 * 120.00425 * 327.84076 * 14 13 12 17 17 N 1.31613 * 120.00509 * 167.04726 * 16 14 13 18 18 Si 1.86806 * 119.99561 * 347.04226 * 16 14 13 19 19 H 1.48502 * 109.46592 * 85.32979 * 18 16 14 20 20 H 1.48491 * 109.47156 * 205.33189 * 18 16 14 21 21 H 1.48504 * 109.47253 * 325.33621 * 18 16 14 22 22 C 1.47246 * 117.80229 * 49.15999 * 13 12 10 23 23 C 1.53281 * 108.58623 * 308.79897 * 22 13 12 24 24 O 1.41876 * 110.71432 * 276.30372 * 10 9 8 25 25 C 1.53006 * 109.46815 * 270.00014 * 3 2 1 26 26 C 1.53786 * 113.61259 * 154.71041 * 25 3 2 27 27 C 1.53782 * 87.08035 * 220.01709 * 26 25 3 28 28 C 1.53780 * 113.61623 * 57.21341 * 25 3 2 29 29 H 1.09007 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47386 * 300.00054 * 1 2 3 31 31 H 1.09004 * 109.47552 * 60.00553 * 1 2 3 32 32 H 1.09001 * 109.88108 * 59.57530 * 8 7 5 33 33 H 1.09005 * 109.87875 * 298.42970 * 8 7 5 34 34 H 1.08996 * 110.73719 * 220.15637 * 9 8 7 35 35 H 1.09007 * 110.88799 * 96.91416 * 9 8 7 36 36 H 1.09000 * 110.37415 * 84.49889 * 11 7 5 37 37 H 1.08994 * 110.37412 * 322.14566 * 11 7 5 38 38 H 1.09000 * 109.67197 * 193.11865 * 12 10 9 39 39 H 1.08999 * 109.67519 * 313.62802 * 12 10 9 40 40 H 0.97004 * 120.00175 * 179.97438 * 17 16 14 41 41 H 1.08988 * 109.60840 * 189.06489 * 22 13 12 42 42 H 1.09004 * 109.76134 * 68.61731 * 22 13 12 43 43 H 1.09000 * 109.50894 * 293.06911 * 23 22 13 44 44 H 1.08996 * 109.51120 * 172.91680 * 23 22 13 45 45 H 1.09001 * 112.84658 * 286.01197 * 25 3 2 46 46 H 1.09000 * 113.61312 * 334.56144 * 26 25 3 47 47 H 1.08997 * 113.61389 * 105.46659 * 26 25 3 48 48 H 1.08995 * 113.61169 * 270.88743 * 27 26 25 49 49 H 1.08997 * 113.61502 * 139.97789 * 27 26 25 50 50 H 1.09007 * 113.61071 * 254.52941 * 28 25 3 51 51 H 1.08994 * 113.61559 * 25.34190 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 3.3386 1.2640 0.7103 6 8 3.9686 0.2288 0.7582 7 7 3.8263 2.3773 1.2927 8 6 3.2235 3.7169 1.2198 9 6 4.1113 4.6662 2.0543 10 6 4.8588 3.6982 2.9964 11 6 5.0534 2.4533 2.1090 12 6 6.2064 4.2844 3.3989 13 7 5.9712 5.3766 4.3593 14 6 6.5627 6.6007 4.1964 15 1 6.0522 7.4950 4.5224 16 6 7.8186 6.6926 3.6121 17 7 8.2791 7.8622 3.2223 18 14 8.8549 5.1559 3.3792 19 1 8.4757 4.4914 2.1065 20 1 10.2913 5.5298 3.3337 21 1 8.6214 4.2249 4.5124 22 6 5.0793 5.1080 5.4998 23 6 3.7698 4.5157 4.9669 24 8 4.0663 3.3913 4.1324 25 6 2.2175 1.7714 -1.4426 26 6 2.2396 3.3012 -1.5987 27 6 1.4276 3.1024 -2.8895 28 6 0.9263 1.7835 -2.2777 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2154 3.6928 1.6337 33 1 3.1927 4.0536 0.1835 34 1 3.4994 5.3645 2.6252 35 1 4.8134 5.2029 1.4163 36 1 5.9276 2.5759 1.4697 37 1 5.1551 1.5601 2.7254 38 1 6.8184 3.5118 3.8643 39 1 6.7151 4.6741 2.5172 40 1 9.1569 7.9264 2.8143 41 1 4.8718 6.0381 6.0287 42 1 5.5525 4.3985 6.1786 43 1 3.2387 5.2700 4.3863 44 1 3.1486 4.1948 5.8031 45 1 3.0507 1.2689 -1.9339 46 1 1.6935 3.8278 -0.8161 47 1 3.2363 3.7084 -1.7682 48 1 2.0452 2.9650 -3.7770 49 1 0.6421 3.8449 -3.0299 50 1 0.8628 0.9655 -2.9954 51 1 0.0212 1.8938 -1.6806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972488013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:10 Heat of formation + Delta-G solvation = -73.659205 kcal Electronic energy + Delta-G solvation = -32021.729475 eV Core-core repulsion = 27922.884592 eV Total energy + Delta-G solvation = -4098.844883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.99022 -40.91261 -39.45481 -38.06564 -37.44027 -36.39763 -33.67074 -33.29294 -31.11446 -30.84060 -29.34446 -27.60405 -27.27189 -26.49395 -25.43008 -24.89994 -23.69965 -22.82529 -20.92966 -20.65730 -20.27881 -19.05984 -18.62507 -17.98010 -17.72873 -17.31900 -16.86573 -16.67098 -16.28725 -16.22122 -16.01214 -15.82727 -15.53025 -15.39563 -14.98495 -14.55626 -14.50124 -14.30274 -13.96645 -13.78860 -13.75108 -13.63800 -13.48508 -13.15335 -12.97170 -12.90520 -12.77172 -12.46432 -12.40642 -12.27325 -12.24995 -12.02756 -11.85048 -11.62587 -11.44761 -11.30762 -11.21432 -11.01469 -10.93509 -10.53279 -10.30437 -9.75739 -8.88753 -8.20055 -5.60514 1.23364 1.37549 1.37918 1.43702 1.62886 2.35196 2.58607 2.84860 2.94824 3.17087 3.29360 3.46401 3.61561 3.69754 3.74207 3.78587 3.84295 3.88649 4.05343 4.10933 4.17895 4.28778 4.31423 4.40653 4.41353 4.49399 4.50270 4.53067 4.57020 4.60155 4.66400 4.74688 4.76521 4.79915 4.86430 4.90675 4.94273 4.96677 5.02631 5.07884 5.11302 5.11605 5.22712 5.25047 5.52269 5.82513 6.04067 6.10531 6.26991 6.39179 6.80738 6.99634 7.51787 7.96299 8.99138 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.003430 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.324169 B = 8161.097212 C = 8585.252041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.392 6.392 3 C 0.098 3.902 4 H 0.107 0.893 5 C 0.525 3.475 6 O -0.577 6.577 7 N -0.606 5.606 8 C 0.096 3.904 9 C -0.141 4.141 10 C 0.101 3.899 11 C 0.121 3.879 12 C 0.106 3.894 13 N -0.617 5.617 14 C -0.242 4.242 15 H 0.063 0.937 16 C -0.021 4.021 17 N -0.953 5.953 18 Si 0.935 3.065 19 H -0.268 1.268 20 H -0.310 1.310 21 H -0.272 1.272 22 C 0.105 3.895 23 C 0.050 3.950 24 O -0.375 6.375 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.133 4.133 28 C -0.126 4.126 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.123 0.877 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.735 -9.290 -9.242 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.310 6.310 3 C 0.037 3.963 4 H 0.125 0.875 5 C 0.315 3.685 6 O -0.456 6.456 7 N -0.340 5.340 8 C -0.025 4.025 9 C -0.179 4.179 10 C 0.059 3.941 11 C -0.002 4.002 12 C -0.019 4.019 13 N -0.343 5.343 14 C -0.371 4.371 15 H 0.081 0.919 16 C -0.217 4.217 17 N -0.599 5.599 18 Si 0.764 3.236 19 H -0.194 1.194 20 H -0.239 1.239 21 H -0.197 1.197 22 C -0.020 4.020 23 C -0.026 4.026 24 O -0.294 6.294 25 C -0.153 4.153 26 C -0.179 4.179 27 C -0.170 4.170 28 C -0.163 4.163 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.141 0.859 45 H 0.095 0.905 46 H 0.124 0.876 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.106 0.894 50 H 0.090 0.910 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.291 -10.166 -9.267 24.514 hybrid contribution 1.554 -0.109 0.204 1.571 sum -18.737 -10.275 -9.063 23.212 Atomic orbital electron populations 1.23360 0.78586 1.04446 1.01978 1.87984 1.22061 1.25876 1.95115 1.21963 0.91189 0.86919 0.96257 0.87541 1.20792 0.88066 0.81576 0.78101 1.90672 1.61666 1.32133 1.61166 1.48473 1.25879 1.09286 1.50334 1.22647 0.97586 0.79993 1.02323 1.22990 0.99527 0.97477 0.97887 1.22116 0.91675 0.93876 0.86405 1.21989 0.88161 0.97759 0.92328 1.21772 0.95378 0.90760 0.94028 1.44448 1.55507 1.09769 1.24570 1.18794 0.97506 0.84176 1.36624 0.91922 1.25873 0.97636 0.98082 1.00097 1.69858 1.19909 1.25075 1.45014 0.86175 0.77503 0.81040 0.78837 1.19432 1.23872 1.19729 1.21868 0.91044 0.99779 0.89284 1.23227 0.96264 0.88706 0.94449 1.87697 1.70607 1.34517 1.36608 1.23024 1.01068 0.98095 0.93091 1.23249 1.01561 0.93404 0.99699 1.22782 0.99971 0.97574 0.96670 1.23030 0.96040 0.98644 0.98587 0.88499 0.92863 0.90830 0.89046 0.87794 0.88473 0.90292 0.90056 0.90961 0.95738 0.91250 0.92815 0.90373 0.95138 0.91856 0.85917 0.90515 0.87602 0.91354 0.90220 0.89389 0.91013 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.55 113.37 1.20 1.36 16 2 O -0.39 -9.64 9.94 -131.35 -1.31 -10.94 16 3 C 0.10 2.14 2.03 29.85 0.06 2.20 16 4 H 0.11 1.72 6.64 -2.39 -0.02 1.71 16 5 C 0.53 16.23 7.06 87.66 0.62 16.85 16 6 O -0.58 -23.44 16.99 14.61 0.25 -23.19 16 7 N -0.61 -17.19 3.33 -812.58 -2.71 -19.90 16 8 C 0.10 2.06 5.54 86.76 0.48 2.54 16 9 C -0.14 -3.94 5.87 31.56 0.19 -3.76 16 10 C 0.10 3.39 0.84 -10.16 -0.01 3.38 16 11 C 0.12 3.98 6.07 86.55 0.53 4.51 16 12 C 0.11 4.39 3.01 86.01 0.26 4.65 16 13 N -0.62 -27.38 2.71 -698.65 -1.89 -29.28 16 14 C -0.24 -12.84 10.11 84.03 0.85 -11.99 16 15 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 16 C -0.02 -1.19 5.34 84.86 0.45 -0.73 16 17 N -0.95 -57.41 13.97 21.65 0.30 -57.11 16 18 Si 0.93 45.72 24.21 68.60 1.66 47.38 16 19 H -0.27 -12.22 6.43 99.48 0.64 -11.58 16 20 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 21 H -0.27 -13.22 6.60 99.48 0.66 -12.56 16 22 C 0.10 3.76 6.72 86.33 0.58 4.34 16 23 C 0.05 1.43 6.78 72.08 0.49 1.92 16 24 O -0.38 -12.27 10.28 -148.95 -1.53 -13.81 16 25 C -0.13 -2.40 3.36 -10.26 -0.03 -2.43 16 26 C -0.14 -1.91 5.41 31.12 0.17 -1.74 16 27 C -0.13 -1.44 8.08 31.12 0.25 -1.18 16 28 C -0.13 -1.50 6.26 31.12 0.19 -1.30 16 29 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.05 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.07 0.70 4.79 -2.38 -0.01 0.69 16 32 H 0.09 1.56 7.68 -2.39 -0.02 1.54 16 33 H 0.10 1.80 4.43 -2.38 -0.01 1.79 16 34 H 0.10 2.62 6.07 -2.39 -0.01 2.61 16 35 H 0.08 2.42 7.82 -2.38 -0.02 2.40 16 36 H 0.08 2.67 7.99 -2.39 -0.02 2.65 16 37 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 38 H 0.02 1.07 6.66 -2.39 -0.02 1.06 16 39 H 0.07 3.07 4.65 -2.39 -0.01 3.06 16 40 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 41 H 0.08 2.70 7.96 -2.39 -0.02 2.68 16 42 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.06 1.69 6.22 -2.39 -0.01 1.67 16 44 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.11 1.07 6.63 -2.39 -0.02 1.06 16 47 H 0.07 1.05 7.70 -2.39 -0.02 1.03 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 51 H 0.10 0.86 6.05 -2.39 -0.01 0.85 16 Total: -1.00 -74.04 375.45 1.86 -72.18 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.82 Total: 16.06 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 6.27 Total: 18.61 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -4.30 Total: -106.29 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.59 Total: -47.94 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.66 Total: 47.38 kcal Total: -74.04 1.86 -72.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972488013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.477 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds