Wall clock time and date at job start Tue Mar 31 2020 21:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99876 * 2 1 4 4 H 1.08997 * 109.47038 * 29.99378 * 3 2 1 5 5 C 1.50700 * 109.46772 * 269.99635 * 3 2 1 6 6 O 1.21286 * 120.00194 * 332.01388 * 5 3 2 7 7 N 1.34776 * 120.00008 * 152.01112 * 5 3 2 8 8 C 1.47198 * 135.99427 * 5.07228 * 7 5 3 9 9 C 1.53210 * 87.73470 * 153.42428 * 8 7 5 10 10 C 1.47145 * 136.00143 * 185.44092 * 7 5 3 11 11 C 1.52512 * 114.05600 * 139.65917 * 9 8 7 12 12 C 1.53192 * 109.36787 * 190.02445 * 11 9 8 13 13 C 1.53153 * 109.35819 * 301.11714 * 12 11 9 14 14 N 1.46900 * 109.07651 * 56.56897 * 13 12 11 15 15 C 1.36940 * 120.69978 * 124.52237 * 14 13 12 16 16 H 1.08003 * 119.99551 * 330.73122 * 15 14 13 17 17 C 1.38813 * 120.00133 * 150.72232 * 15 14 13 18 18 N 1.31618 * 119.99791 * 346.40307 * 17 15 14 19 19 Si 1.86797 * 119.99857 * 166.39692 * 17 15 14 20 20 H 1.48501 * 109.47215 * 90.00174 * 19 17 15 21 21 H 1.48498 * 109.47298 * 210.00528 * 19 17 15 22 22 H 1.48500 * 109.47142 * 330.00246 * 19 17 15 23 23 C 1.47141 * 118.60587 * 304.54413 * 14 13 12 24 24 C 1.52997 * 109.47147 * 150.00269 * 3 2 1 25 25 H 1.08993 * 110.81134 * 70.53017 * 24 3 2 26 26 C 1.54817 * 110.90542 * 306.89923 * 24 3 2 27 27 C 1.54104 * 104.18776 * 220.92461 * 26 24 3 28 28 O 1.43746 * 107.29336 * 357.96977 * 27 26 24 29 29 C 1.44375 * 106.97263 * 26.51435 * 28 27 26 30 30 H 1.09004 * 109.46764 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46933 * 300.00095 * 1 2 3 32 32 H 1.08991 * 109.47009 * 60.00687 * 1 2 3 33 33 H 1.09003 * 113.49167 * 268.11464 * 8 7 5 34 34 H 1.09004 * 113.48943 * 38.62765 * 8 7 5 35 35 H 1.09002 * 113.49137 * 321.37498 * 10 7 5 36 36 H 1.08996 * 113.49312 * 91.81353 * 10 7 5 37 37 H 1.09000 * 109.48965 * 309.99375 * 11 9 8 38 38 H 1.08997 * 109.48456 * 70.06136 * 11 9 8 39 39 H 1.08999 * 109.49143 * 181.14682 * 12 11 9 40 40 H 1.09000 * 109.50967 * 61.08926 * 12 11 9 41 41 H 1.09003 * 109.53373 * 296.68819 * 13 12 11 42 42 H 1.09003 * 109.53311 * 176.45210 * 13 12 11 43 43 H 0.97002 * 119.99222 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.63309 * 291.52441 * 23 14 13 45 45 H 1.08994 * 109.63785 * 170.91606 * 23 14 13 46 46 H 1.09002 * 110.48938 * 339.60133 * 26 24 3 47 47 H 1.09004 * 110.48459 * 102.24697 * 26 24 3 48 48 H 1.09000 * 109.87405 * 117.39801 * 27 26 24 49 49 H 1.09000 * 109.87611 * 238.39351 * 27 26 24 50 50 H 1.08998 * 110.62075 * 201.43550 * 29 28 27 51 51 H 1.09004 * 110.62008 * 78.44250 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2146 1.7643 -1.4208 6 8 2.3914 0.9496 -2.3017 7 7 2.2007 3.0800 -1.7127 8 6 2.1136 4.3337 -0.9463 9 6 2.8638 5.0166 -2.0943 10 6 2.2596 3.8932 -2.9377 11 6 2.3407 6.4072 -2.4386 12 6 2.9871 6.8846 -3.7429 13 6 4.5092 6.9107 -3.5753 14 7 4.9711 5.5750 -3.1746 15 6 5.9270 4.9183 -3.9027 16 1 6.0170 5.0997 -4.9636 17 6 6.7803 4.0196 -3.2773 18 7 6.8584 3.9915 -1.9637 19 14 7.8176 2.8502 -4.2999 20 1 9.1215 3.4888 -4.6119 21 1 8.0498 1.5978 -3.5365 22 1 7.1060 2.5342 -5.5645 23 6 4.3846 4.9574 -1.9748 24 6 3.3589 1.2633 0.7212 25 1 4.0983 0.7250 0.1284 26 6 3.2137 0.6334 2.1279 27 6 4.1092 1.5074 3.0274 28 8 4.7295 2.4927 2.1845 29 6 3.8523 2.6941 1.0556 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.0930 4.6948 -0.8186 34 1 2.6738 4.3113 -0.0115 35 1 2.9434 3.4981 -3.6890 36 1 1.2785 4.1349 -3.3463 37 1 1.2584 6.3684 -2.5621 38 1 2.5908 7.0991 -1.6344 39 1 2.6301 7.8868 -3.9802 40 1 2.7219 6.2032 -4.5513 41 1 4.7789 7.6354 -2.8070 42 1 4.9752 7.1894 -4.5205 43 1 7.4544 3.3632 -1.5268 44 1 4.7040 5.5047 -1.0879 45 1 4.7063 3.9184 -1.9032 46 1 2.1770 0.6797 2.4615 47 1 3.5681 -0.3974 2.1228 48 1 3.5029 1.9990 3.7882 49 1 4.8715 0.8902 3.5029 50 1 4.4006 3.1174 0.2141 51 1 3.0142 3.3348 1.3301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981914317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:59 Heat of formation + Delta-G solvation = -56.902239 kcal Electronic energy + Delta-G solvation = -32655.763338 eV Core-core repulsion = 28557.645092 eV Total energy + Delta-G solvation = -4098.118246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.83873 -39.54572 -38.41433 -37.02711 -35.76518 -33.07826 -32.82330 -30.58940 -29.97916 -29.56961 -27.42973 -26.57678 -25.80247 -25.42267 -24.68877 -22.62954 -22.25636 -20.92943 -20.69656 -19.18539 -17.90559 -17.50112 -16.87935 -16.55787 -16.42756 -16.13897 -15.37543 -15.24558 -14.83775 -14.73580 -14.53144 -14.15382 -14.06333 -13.58574 -13.50552 -13.31536 -13.24121 -12.98835 -12.67934 -12.31916 -12.16352 -12.05549 -11.75000 -11.58754 -11.51386 -11.40861 -11.19377 -11.13166 -10.89706 -10.71590 -10.65055 -10.52079 -10.43058 -10.24950 -10.05328 -9.90003 -9.70551 -9.60263 -9.43483 -9.06030 -8.46366 -8.33881 -6.65285 -5.77556 -3.21726 2.77997 2.93760 3.41878 3.50768 3.51640 3.55238 3.99603 4.38276 4.49720 4.65680 4.70736 4.72859 4.86522 4.93108 5.07403 5.12782 5.16131 5.22425 5.23847 5.34802 5.41777 5.46961 5.50742 5.53425 5.61108 5.63275 5.69395 5.72761 5.76194 5.79840 5.89297 5.91336 6.05274 6.10357 6.15095 6.19586 6.26856 6.39779 6.48993 6.56364 6.72991 6.81735 6.86892 6.94102 6.96660 7.26064 7.58956 7.82268 8.03785 8.41613 8.46457 9.22526 9.84899 10.41243 11.31369 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010082 B = 0.004925 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.639333 B = 5683.558675 C = 6522.276653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.096 3.904 4 H 0.079 0.921 5 C 0.517 3.483 6 O -0.524 6.524 7 N -0.636 5.636 8 C 0.088 3.912 9 C -0.109 4.109 10 C 0.118 3.882 11 C -0.092 4.092 12 C -0.134 4.134 13 C 0.144 3.856 14 N -0.588 5.588 15 C -0.256 4.256 16 H 0.064 0.936 17 C 0.010 3.990 18 N -0.900 5.900 19 Si 0.898 3.102 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.200 3.800 24 C -0.115 4.115 25 H 0.101 0.899 26 C -0.138 4.138 27 C 0.042 3.958 28 O -0.364 6.364 29 C 0.051 3.949 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.018 0.982 42 H 0.053 0.947 43 H 0.255 0.745 44 H 0.025 0.975 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.056 0.944 49 H 0.083 0.917 50 H 0.116 0.884 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.569 -0.376 9.035 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.271 6.271 3 C 0.034 3.966 4 H 0.097 0.903 5 C 0.305 3.695 6 O -0.399 6.399 7 N -0.373 5.373 8 C -0.035 4.035 9 C -0.112 4.112 10 C -0.004 4.004 11 C -0.130 4.130 12 C -0.174 4.174 13 C 0.018 3.982 14 N -0.310 5.310 15 C -0.385 4.385 16 H 0.082 0.918 17 C -0.190 4.190 18 N -0.543 5.543 19 Si 0.728 3.272 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.074 3.926 24 C -0.134 4.134 25 H 0.120 0.880 26 C -0.176 4.176 27 C -0.035 4.035 28 O -0.283 6.283 29 C -0.026 4.026 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.134 0.866 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.024 -1.275 8.749 16.578 hybrid contribution -0.072 -0.590 -0.528 0.795 sum -14.096 -1.865 8.220 16.424 Atomic orbital electron populations 1.22874 0.80925 1.03179 0.99901 1.88024 1.19665 1.25009 1.94420 1.21878 0.95946 0.86253 0.92511 0.90342 1.20685 0.77262 0.80309 0.91218 1.90715 1.48280 1.51776 1.49117 1.49606 1.72130 1.03285 1.12249 1.23482 1.00118 0.81887 0.98035 1.22786 1.00952 0.93429 0.94033 1.22948 0.99658 0.88005 0.89792 1.21218 0.98101 0.95254 0.98412 1.22027 0.98960 0.99447 0.96923 1.20897 0.91201 0.88127 0.98004 1.43960 1.43899 1.13222 1.29952 1.19096 1.08373 1.20392 0.90668 0.91817 1.25044 0.97297 1.01128 0.95501 1.69942 1.39560 1.37787 1.07052 0.86364 0.80308 0.80793 0.79740 1.21369 1.21506 1.20494 1.20476 0.82873 1.00540 0.88717 1.22775 0.95319 0.98626 0.96670 0.88042 1.22856 1.00638 1.00708 0.93425 1.23200 0.96419 0.90326 0.93535 1.88989 1.44615 1.59749 1.34931 1.23932 0.94205 0.94150 0.90283 0.89105 0.93891 0.94004 0.90367 0.89923 0.89579 0.91100 0.93149 0.91919 0.93001 0.92339 0.96395 0.92839 0.93486 0.95693 0.88914 0.90681 0.89961 0.92575 0.89879 0.86608 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.81 101.05 1.09 1.39 16 2 O -0.35 -5.17 9.52 -53.38 -0.51 -5.67 16 3 C 0.10 1.38 1.85 -27.88 -0.05 1.33 16 4 H 0.08 0.91 7.48 -51.93 -0.39 0.52 16 5 C 0.52 9.49 7.01 -10.99 -0.08 9.42 16 6 O -0.52 -12.00 17.49 -12.59 -0.22 -12.22 16 7 N -0.64 -10.70 3.47 -184.93 -0.64 -11.34 16 8 C 0.09 1.21 7.16 -8.03 -0.06 1.15 16 9 C -0.11 -1.82 0.96 -154.87 -0.15 -1.97 16 10 C 0.12 2.05 7.54 -8.21 -0.06 1.99 16 11 C -0.09 -1.31 5.11 -26.88 -0.14 -1.44 16 12 C -0.13 -2.10 6.03 -26.55 -0.16 -2.26 16 13 C 0.14 2.83 6.46 -3.75 -0.02 2.81 16 14 N -0.59 -13.99 3.00 -172.51 -0.52 -14.50 16 15 C -0.26 -6.89 9.59 -15.06 -0.14 -7.04 16 16 H 0.06 1.71 7.87 -52.48 -0.41 1.29 16 17 C 0.01 0.26 4.99 -17.43 -0.09 0.18 16 18 N -0.90 -25.68 11.13 55.49 0.62 -25.07 16 19 Si 0.90 22.43 29.57 -169.99 -5.03 17.40 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.20 4.39 4.26 -3.86 -0.02 4.37 16 24 C -0.11 -1.69 2.85 -88.61 -0.25 -1.95 16 25 H 0.10 1.79 8.13 -51.93 -0.42 1.36 16 26 C -0.14 -1.61 6.15 -25.20 -0.15 -1.76 16 27 C 0.04 0.50 7.70 37.73 0.29 0.79 16 28 O -0.36 -5.89 11.52 -35.23 -0.41 -6.30 16 29 C 0.05 0.77 5.39 38.21 0.21 0.98 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.08 1.10 4.39 -51.93 -0.23 0.87 16 35 H 0.09 1.83 8.11 -51.93 -0.42 1.41 16 36 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 37 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 2.37 5.58 -51.93 -0.29 2.08 16 46 H 0.07 0.74 7.83 -51.93 -0.41 0.33 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.12 2.16 7.29 -51.93 -0.38 1.78 16 51 H 0.06 0.77 6.19 -51.93 -0.32 0.45 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -33.07 393.62 -9.27 -42.34 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.72 Total: 1.44 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 0.22 Total: 8.00 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.54 Total: -50.91 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.13 Total: -24.20 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.07 -9.27 -42.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981914317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.564 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds