Wall clock time and date at job start Tue Mar 31 2020 21:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00386 * 2 1 4 4 H 1.08998 * 109.46957 * 29.99635 * 3 2 1 5 5 C 1.50694 * 109.47250 * 150.00238 * 3 2 1 6 6 O 1.21284 * 120.00378 * 188.15400 * 5 3 2 7 7 N 1.34781 * 120.00069 * 8.14549 * 5 3 2 8 8 C 1.47665 * 134.45488 * 185.05087 * 7 5 3 9 9 C 1.53452 * 85.97530 * 155.74133 * 8 7 5 10 10 C 1.47677 * 134.45150 * 5.09059 * 7 5 3 11 11 C 1.52679 * 113.69240 * 268.85702 * 9 8 7 12 12 C 1.53175 * 109.34127 * 171.35128 * 11 9 8 13 13 C 1.53146 * 109.37280 * 59.04550 * 12 11 9 14 14 N 1.46890 * 109.07487 * 303.50810 * 13 12 11 15 15 C 1.36945 * 120.68616 * 235.38822 * 14 13 12 16 16 H 1.07997 * 120.00209 * 30.77981 * 15 14 13 17 17 C 1.38814 * 119.99901 * 210.77025 * 15 14 13 18 18 N 1.31620 * 119.99932 * 9.99784 * 17 15 14 19 19 Si 1.86800 * 120.00171 * 189.99127 * 17 15 14 20 20 H 1.48501 * 109.46830 * 90.00102 * 19 17 15 21 21 H 1.48492 * 109.47465 * 210.00362 * 19 17 15 22 22 H 1.48497 * 109.46983 * 330.00891 * 19 17 15 23 23 C 1.47110 * 118.62562 * 55.36593 * 14 13 12 24 24 C 1.52994 * 109.46804 * 270.00138 * 3 2 1 25 25 H 1.09002 * 110.75674 * 304.14660 * 24 3 2 26 26 C 1.55311 * 110.85033 * 67.84485 * 24 3 2 27 27 C 1.54951 * 100.94331 * 152.31881 * 26 24 3 28 28 O 1.43650 * 105.13447 * 323.55898 * 27 26 24 29 29 C 1.43236 * 109.97208 * 24.42617 * 28 27 26 30 30 H 1.09005 * 109.46992 * 59.99525 * 1 2 3 31 31 H 1.08994 * 109.47807 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46967 * 300.00223 * 1 2 3 33 33 H 1.09002 * 113.79693 * 41.47809 * 8 7 5 34 34 H 1.09002 * 113.90461 * 270.01399 * 8 7 5 35 35 H 1.09001 * 113.79207 * 90.00154 * 10 7 5 36 36 H 1.09000 * 113.79152 * 318.52427 * 10 7 5 37 37 H 1.09004 * 109.52249 * 51.38104 * 11 9 8 38 38 H 1.08998 * 109.48401 * 291.30395 * 11 9 8 39 39 H 1.08997 * 109.49624 * 299.06903 * 12 11 9 40 40 H 1.09008 * 109.49038 * 179.02102 * 12 11 9 41 41 H 1.09000 * 109.54071 * 63.39033 * 13 12 11 42 42 H 1.09010 * 109.53643 * 183.62674 * 13 12 11 43 43 H 0.96999 * 119.99964 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.63451 * 68.32668 * 23 14 13 45 45 H 1.08996 * 109.63970 * 188.92731 * 23 14 13 46 46 H 1.08997 * 111.12297 * 270.24183 * 26 24 3 47 47 H 1.09001 * 111.12342 * 34.40321 * 26 24 3 48 48 H 1.08998 * 110.31218 * 204.64061 * 27 26 24 49 49 H 1.09000 * 110.39063 * 82.51219 * 27 26 24 50 50 H 1.09004 * 109.82735 * 238.77189 * 29 28 27 51 51 H 1.08997 * 109.90406 * 117.85058 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 3.3387 1.2638 0.7103 6 8 3.9298 2.2949 0.9519 7 7 3.8699 0.0807 1.0773 8 6 5.0637 -0.3227 1.8471 9 6 4.3025 -1.6225 2.1400 10 6 3.4915 -1.3317 0.8701 11 6 3.4741 -1.5728 3.4215 12 6 2.5948 -2.8242 3.5060 13 6 3.4835 -4.0714 3.4939 14 7 4.3218 -4.0517 2.2878 15 6 4.3135 -5.1059 1.4137 16 1 3.4177 -5.6957 1.2874 17 6 5.4566 -5.4163 0.6899 18 7 6.5991 -4.8314 0.9813 19 14 5.3734 -6.6643 -0.6976 20 1 5.0568 -5.9685 -1.9707 21 1 6.6827 -7.3536 -0.8226 22 1 4.3145 -7.6626 -0.4025 23 6 5.1700 -2.8760 2.0381 24 6 2.2177 1.7713 -1.4425 25 1 2.8212 1.0529 -1.9974 26 6 0.8547 2.0150 -2.1460 27 6 1.2499 3.0917 -3.1879 28 8 2.2221 3.9159 -2.5252 29 6 2.8611 3.1741 -1.4797 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 5.2449 0.2894 2.7306 34 1 5.9559 -0.4636 1.2369 35 1 3.9148 -1.7724 -0.0325 36 1 2.4234 -1.5210 0.9774 37 1 2.8425 -0.6845 3.4128 38 1 4.1400 -1.5374 4.2837 39 1 1.9181 -2.8516 2.6520 40 1 2.0150 -2.7997 4.4288 41 1 4.1190 -4.0749 4.3795 42 1 2.8584 -4.9644 3.4889 43 1 7.3980 -5.0486 0.4758 44 1 5.9648 -2.8329 2.7829 45 1 5.6027 -2.9418 1.0399 46 1 0.4971 1.1085 -2.6342 47 1 0.1141 2.3998 -1.4450 48 1 0.3792 3.6846 -3.4681 49 1 1.6882 2.6242 -4.0696 50 1 2.7090 3.6761 -0.5241 51 1 3.9278 3.0865 -1.6854 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981914318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:02 Heat of formation + Delta-G solvation = -62.996614 kcal Electronic energy + Delta-G solvation = -31939.307902 eV Core-core repulsion = 27840.925384 eV Total energy + Delta-G solvation = -4098.382518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.76727 -39.76402 -38.24081 -37.53220 -35.72965 -32.85026 -32.83820 -30.67415 -30.06864 -29.84212 -27.79823 -26.08659 -25.80934 -25.36127 -24.82578 -22.78202 -22.24202 -21.38785 -20.58836 -19.19299 -17.79924 -17.54875 -16.81493 -16.76847 -16.59783 -16.17339 -15.52712 -15.29071 -15.07609 -14.71961 -14.58989 -14.12678 -13.91207 -13.71744 -13.51504 -13.47427 -13.35392 -12.89721 -12.72237 -12.47629 -12.29468 -12.09684 -11.93827 -11.73235 -11.60655 -11.54894 -11.22957 -11.17580 -11.07410 -10.93333 -10.80065 -10.47370 -10.28072 -10.16055 -10.07147 -9.91598 -9.69688 -9.66970 -9.43949 -9.21614 -8.51997 -8.32164 -6.64463 -5.81891 -3.28637 2.64047 3.09833 3.34604 3.38034 3.42027 3.42815 3.68912 4.08034 4.40357 4.45126 4.58488 4.73619 4.78385 4.91410 4.94028 4.99430 5.11635 5.17422 5.28035 5.33112 5.40913 5.41675 5.45260 5.46866 5.54406 5.58686 5.61209 5.75615 5.79938 5.81500 5.91940 5.95284 5.96136 6.13663 6.16933 6.23046 6.34204 6.41090 6.55587 6.66141 6.76406 6.77721 6.80884 6.87550 6.99638 7.27033 7.59631 7.76189 8.00319 8.28573 8.43206 9.18908 9.80344 10.39023 11.26478 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003508 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.987004 B = 7980.023787 C = 8590.801174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.363 6.363 3 C 0.090 3.910 4 H 0.092 0.908 5 C 0.535 3.465 6 O -0.551 6.551 7 N -0.623 5.623 8 C 0.113 3.887 9 C -0.116 4.116 10 C 0.136 3.864 11 C -0.080 4.080 12 C -0.132 4.132 13 C 0.145 3.855 14 N -0.590 5.590 15 C -0.250 4.250 16 H 0.065 0.935 17 C 0.006 3.994 18 N -0.906 5.906 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.192 3.808 24 C -0.136 4.136 25 H 0.097 0.903 26 C -0.150 4.150 27 C 0.051 3.949 28 O -0.386 6.386 29 C 0.062 3.938 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.017 0.983 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.023 0.977 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 11.561 -2.602 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.281 6.281 3 C 0.029 3.971 4 H 0.110 0.890 5 C 0.323 3.677 6 O -0.431 6.431 7 N -0.355 5.355 8 C -0.010 4.010 9 C -0.119 4.119 10 C 0.015 3.985 11 C -0.118 4.118 12 C -0.172 4.172 13 C 0.018 3.982 14 N -0.312 5.312 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.193 4.193 18 N -0.550 5.550 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.066 3.934 24 C -0.155 4.155 25 H 0.116 0.884 26 C -0.188 4.188 27 C -0.025 4.025 28 O -0.306 6.306 29 C -0.015 4.015 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.079 0.921 50 H 0.102 0.898 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.968 12.247 -2.655 17.328 hybrid contribution -0.194 -0.707 -0.773 1.065 sum -12.162 11.540 -3.428 17.112 Atomic orbital electron populations 1.23023 0.80957 1.03487 1.00228 1.88147 1.19960 1.25191 1.94827 1.22202 0.93334 0.86882 0.94683 0.88988 1.19896 0.86347 0.82770 0.78655 1.90714 1.62757 1.32764 1.56907 1.50211 1.26713 1.05953 1.52636 1.23294 0.89392 0.93626 0.94650 1.22897 0.97311 0.96743 0.94953 1.23269 1.01334 0.75970 0.97922 1.21070 0.97506 0.97337 0.95901 1.22009 0.98308 0.96670 1.00180 1.20893 0.92629 0.94797 0.89833 1.43978 1.49181 1.16390 1.21667 1.19167 0.95081 1.07137 1.16575 0.91766 1.25130 0.94920 0.98608 1.00646 1.69948 0.98762 1.45209 1.41107 0.86295 0.76928 0.81232 0.82323 1.21466 1.21728 1.20455 1.20686 0.89578 0.81084 1.02086 1.23133 0.97849 0.98728 0.95825 0.88435 1.23420 0.96738 1.00037 0.98561 1.23366 0.92022 0.92038 0.95111 1.88411 1.54889 1.37986 1.49273 1.23181 0.96967 0.89747 0.91588 0.93375 0.89012 0.93929 0.90816 0.89566 0.89851 0.88999 0.93508 0.92355 0.92319 0.93219 0.96486 0.92917 0.93566 0.95852 0.89056 0.89246 0.90219 0.89720 0.92064 0.89815 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.62 101.05 1.07 1.24 16 2 O -0.36 -4.41 6.85 -35.23 -0.24 -4.65 16 3 C 0.09 1.12 2.23 -27.89 -0.06 1.05 16 4 H 0.09 1.03 7.73 -51.93 -0.40 0.62 16 5 C 0.54 8.52 7.27 -10.99 -0.08 8.44 16 6 O -0.55 -10.11 15.87 5.55 0.09 -10.02 16 7 N -0.62 -10.13 3.44 -180.44 -0.62 -10.75 16 8 C 0.11 1.86 7.97 -3.18 -0.03 1.83 16 9 C -0.12 -2.03 0.87 -154.41 -0.13 -2.16 16 10 C 0.14 2.28 6.52 -3.17 -0.02 2.26 16 11 C -0.08 -1.29 5.02 -26.81 -0.13 -1.42 16 12 C -0.13 -2.14 6.00 -26.56 -0.16 -2.30 16 13 C 0.14 2.84 6.46 -3.75 -0.02 2.82 16 14 N -0.59 -13.67 3.00 -172.47 -0.52 -14.18 16 15 C -0.25 -6.42 9.59 -15.06 -0.14 -6.57 16 16 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 17 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 18 N -0.91 -24.93 11.02 55.49 0.61 -24.32 16 19 Si 0.90 20.84 29.57 -169.99 -5.03 15.81 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.19 4.18 4.37 -3.82 -0.02 4.16 16 24 C -0.14 -1.54 2.79 -88.67 -0.25 -1.79 16 25 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 26 C -0.15 -1.28 4.82 -24.48 -0.12 -1.40 16 27 C 0.05 0.47 7.78 38.19 0.30 0.77 16 28 O -0.39 -4.93 11.36 -35.23 -0.40 -5.33 16 29 C 0.06 0.79 6.18 37.88 0.23 1.02 16 30 H 0.05 0.34 5.15 -51.93 -0.27 0.07 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 34 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 35 H 0.08 1.52 7.97 -51.93 -0.41 1.11 16 36 H 0.09 1.50 5.55 -51.93 -0.29 1.22 16 37 H 0.05 0.72 8.02 -51.93 -0.42 0.30 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.97 7.37 -51.93 -0.38 0.59 16 40 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 1.02 7.93 -51.92 -0.41 0.61 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 2.24 6.02 -51.93 -0.31 1.93 16 46 H 0.09 0.66 7.62 -51.93 -0.40 0.27 16 47 H 0.08 0.61 7.42 -51.93 -0.39 0.22 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 1.14 6.92 -51.93 -0.36 0.78 16 51 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -29.74 387.40 -8.56 -38.30 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.65 Total: 1.28 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 0.35 Total: 8.02 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.53 Total: -49.25 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.55 Total: -19.99 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.74 -8.56 -38.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981914318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.695 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds