Wall clock time and date at job start Tue Mar 31 2020 21:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00386 * 2 1 4 4 H 1.08998 * 109.46957 * 29.99635 * 3 2 1 5 5 C 1.50694 * 109.47250 * 150.00238 * 3 2 1 6 6 O 1.21284 * 120.00378 * 188.15400 * 5 3 2 7 7 N 1.34781 * 120.00069 * 8.14549 * 5 3 2 8 8 C 1.47665 * 134.45488 * 185.05087 * 7 5 3 9 9 C 1.53452 * 85.97530 * 155.74133 * 8 7 5 10 10 C 1.47677 * 134.45150 * 5.09059 * 7 5 3 11 11 C 1.52679 * 113.69240 * 268.85702 * 9 8 7 12 12 C 1.53175 * 109.34127 * 171.35128 * 11 9 8 13 13 C 1.53146 * 109.37280 * 59.04550 * 12 11 9 14 14 N 1.46890 * 109.07487 * 303.50810 * 13 12 11 15 15 C 1.36945 * 120.68616 * 235.38822 * 14 13 12 16 16 H 1.07997 * 120.00209 * 30.77981 * 15 14 13 17 17 C 1.38814 * 119.99901 * 210.77025 * 15 14 13 18 18 N 1.31620 * 119.99932 * 9.99784 * 17 15 14 19 19 Si 1.86800 * 120.00171 * 189.99127 * 17 15 14 20 20 H 1.48501 * 109.46830 * 90.00102 * 19 17 15 21 21 H 1.48492 * 109.47465 * 210.00362 * 19 17 15 22 22 H 1.48497 * 109.46983 * 330.00891 * 19 17 15 23 23 C 1.47110 * 118.62562 * 55.36593 * 14 13 12 24 24 C 1.52994 * 109.46804 * 270.00138 * 3 2 1 25 25 H 1.09002 * 110.75674 * 304.14660 * 24 3 2 26 26 C 1.55311 * 110.85033 * 67.84485 * 24 3 2 27 27 C 1.54951 * 100.94331 * 152.31881 * 26 24 3 28 28 O 1.43650 * 105.13447 * 323.55898 * 27 26 24 29 29 C 1.43236 * 109.97208 * 24.42617 * 28 27 26 30 30 H 1.09005 * 109.46992 * 59.99525 * 1 2 3 31 31 H 1.08994 * 109.47807 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46967 * 300.00223 * 1 2 3 33 33 H 1.09002 * 113.79693 * 41.47809 * 8 7 5 34 34 H 1.09002 * 113.90461 * 270.01399 * 8 7 5 35 35 H 1.09001 * 113.79207 * 90.00154 * 10 7 5 36 36 H 1.09000 * 113.79152 * 318.52427 * 10 7 5 37 37 H 1.09004 * 109.52249 * 51.38104 * 11 9 8 38 38 H 1.08998 * 109.48401 * 291.30395 * 11 9 8 39 39 H 1.08997 * 109.49624 * 299.06903 * 12 11 9 40 40 H 1.09008 * 109.49038 * 179.02102 * 12 11 9 41 41 H 1.09000 * 109.54071 * 63.39033 * 13 12 11 42 42 H 1.09010 * 109.53643 * 183.62674 * 13 12 11 43 43 H 0.96999 * 119.99964 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.63451 * 68.32668 * 23 14 13 45 45 H 1.08996 * 109.63970 * 188.92731 * 23 14 13 46 46 H 1.08997 * 111.12297 * 270.24183 * 26 24 3 47 47 H 1.09001 * 111.12342 * 34.40321 * 26 24 3 48 48 H 1.08998 * 110.31218 * 204.64061 * 27 26 24 49 49 H 1.09000 * 110.39063 * 82.51219 * 27 26 24 50 50 H 1.09004 * 109.82735 * 238.77189 * 29 28 27 51 51 H 1.08997 * 109.90406 * 117.85058 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 3.3387 1.2638 0.7103 6 8 3.9298 2.2949 0.9519 7 7 3.8699 0.0807 1.0773 8 6 5.0637 -0.3227 1.8471 9 6 4.3025 -1.6225 2.1400 10 6 3.4915 -1.3317 0.8701 11 6 3.4741 -1.5728 3.4215 12 6 2.5948 -2.8242 3.5060 13 6 3.4835 -4.0714 3.4939 14 7 4.3218 -4.0517 2.2878 15 6 4.3135 -5.1059 1.4137 16 1 3.4177 -5.6957 1.2874 17 6 5.4566 -5.4163 0.6899 18 7 6.5991 -4.8314 0.9813 19 14 5.3734 -6.6643 -0.6976 20 1 5.0568 -5.9685 -1.9707 21 1 6.6827 -7.3536 -0.8226 22 1 4.3145 -7.6626 -0.4025 23 6 5.1700 -2.8760 2.0381 24 6 2.2177 1.7713 -1.4425 25 1 2.8212 1.0529 -1.9974 26 6 0.8547 2.0150 -2.1460 27 6 1.2499 3.0917 -3.1879 28 8 2.2221 3.9159 -2.5252 29 6 2.8611 3.1741 -1.4797 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 5.2449 0.2894 2.7306 34 1 5.9559 -0.4636 1.2369 35 1 3.9148 -1.7724 -0.0325 36 1 2.4234 -1.5210 0.9774 37 1 2.8425 -0.6845 3.4128 38 1 4.1400 -1.5374 4.2837 39 1 1.9181 -2.8516 2.6520 40 1 2.0150 -2.7997 4.4288 41 1 4.1190 -4.0749 4.3795 42 1 2.8584 -4.9644 3.4889 43 1 7.3980 -5.0486 0.4758 44 1 5.9648 -2.8329 2.7829 45 1 5.6027 -2.9418 1.0399 46 1 0.4971 1.1085 -2.6342 47 1 0.1141 2.3998 -1.4450 48 1 0.3792 3.6846 -3.4681 49 1 1.6882 2.6242 -4.0696 50 1 2.7090 3.6761 -0.5241 51 1 3.9278 3.0865 -1.6854 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981914318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:01 Heat of formation + Delta-G solvation = -81.372759 kcal Electronic energy + Delta-G solvation = -31940.104751 eV Core-core repulsion = 27840.925384 eV Total energy + Delta-G solvation = -4099.179368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.98996 -40.86534 -39.42238 -38.54303 -37.33094 -34.58217 -33.74168 -32.03718 -31.67517 -30.88495 -28.78561 -27.29776 -27.15005 -27.08532 -25.92569 -23.91600 -23.59536 -22.42501 -21.96062 -20.46988 -19.27525 -18.66162 -18.40487 -17.87056 -17.63452 -17.22584 -16.80998 -16.61717 -16.22809 -15.97508 -15.68979 -15.51881 -15.22477 -15.06625 -14.88999 -14.63936 -14.40043 -14.29789 -14.04378 -13.91837 -13.42956 -13.28839 -13.14256 -12.88536 -12.82412 -12.77294 -12.62448 -12.49273 -12.34447 -12.21571 -12.06505 -11.91286 -11.88957 -11.69042 -11.49314 -11.27066 -11.06358 -10.93427 -10.58726 -10.51001 -10.38304 -9.68608 -8.54521 -7.80532 -5.29336 1.39790 1.50085 1.51782 1.59496 1.84642 2.49988 2.55068 2.84703 3.13444 3.31853 3.43776 3.55753 3.68260 3.83364 3.88821 3.90471 3.97253 4.12769 4.16558 4.22899 4.34689 4.37768 4.43563 4.49906 4.53885 4.57640 4.61917 4.70739 4.72447 4.76116 4.78444 4.80914 4.84515 4.87144 4.92180 5.01927 5.07647 5.09097 5.12249 5.20344 5.32345 5.33566 5.49512 5.62365 5.71492 5.79892 5.93246 5.98336 6.47258 6.70626 7.00916 7.22742 7.92615 8.45920 9.25220 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003508 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.987004 B = 7980.023787 C = 8590.801174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.381 6.381 3 C 0.102 3.898 4 H 0.111 0.889 5 C 0.529 3.471 6 O -0.578 6.578 7 N -0.622 5.622 8 C 0.111 3.889 9 C -0.109 4.109 10 C 0.150 3.850 11 C -0.074 4.074 12 C -0.119 4.119 13 C 0.140 3.860 14 N -0.606 5.606 15 C -0.252 4.252 16 H 0.067 0.933 17 C -0.045 4.045 18 N -0.936 5.936 19 Si 0.960 3.040 20 H -0.286 1.286 21 H -0.300 1.300 22 H -0.268 1.268 23 C 0.205 3.795 24 C -0.133 4.133 25 H 0.084 0.916 26 C -0.138 4.138 27 C 0.043 3.957 28 O -0.406 6.406 29 C 0.065 3.935 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.012 0.988 42 H 0.054 0.946 43 H 0.248 0.752 44 H -0.004 1.004 45 H 0.058 0.942 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.108 0.892 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 12.017 -2.722 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.300 6.300 3 C 0.041 3.959 4 H 0.128 0.872 5 C 0.319 3.681 6 O -0.460 6.460 7 N -0.354 5.354 8 C -0.012 4.012 9 C -0.112 4.112 10 C 0.029 3.971 11 C -0.112 4.112 12 C -0.158 4.158 13 C 0.014 3.986 14 N -0.329 5.329 15 C -0.383 4.383 16 H 0.085 0.915 17 C -0.240 4.240 18 N -0.583 5.583 19 Si 0.789 3.211 20 H -0.213 1.213 21 H -0.227 1.227 22 H -0.193 1.193 23 C 0.079 3.921 24 C -0.153 4.153 25 H 0.103 0.897 26 C -0.175 4.175 27 C -0.033 4.033 28 O -0.326 6.326 29 C -0.011 4.011 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.014 0.986 45 H 0.076 0.924 46 H 0.125 0.875 47 H 0.115 0.885 48 H 0.126 0.874 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.311 12.704 -2.766 20.086 hybrid contribution 0.826 -0.846 -0.712 1.381 sum -14.485 11.857 -3.478 19.039 Atomic orbital electron populations 1.23253 0.78847 1.04474 1.01744 1.88101 1.22192 1.24784 1.94954 1.22041 0.91538 0.87634 0.94719 0.87155 1.20621 0.87473 0.81892 0.78093 1.90699 1.63933 1.33501 1.57887 1.50186 1.26429 1.06070 1.52727 1.23237 0.89443 0.93462 0.95064 1.22713 0.97174 0.94719 0.96556 1.23028 1.01520 0.76099 0.96473 1.21043 0.97425 0.98023 0.94709 1.21870 0.97603 0.94428 1.01885 1.21059 0.92538 0.96915 0.88063 1.44227 1.49655 1.16309 1.22725 1.19470 0.94941 1.07308 1.16551 0.91496 1.25782 0.94754 1.00559 1.02952 1.70115 0.99155 1.46782 1.42209 0.85371 0.76507 0.79385 0.79825 1.21339 1.22670 1.19302 1.20345 0.89632 0.82940 0.99170 1.23067 0.99531 0.97256 0.95443 0.89715 1.23425 0.95178 1.00588 0.98320 1.23630 0.92088 0.92401 0.95162 1.88391 1.55790 1.39034 1.49397 1.23013 0.96131 0.90691 0.91280 0.91470 0.88350 0.92803 0.89848 0.90494 0.91961 0.87817 0.91853 0.92154 0.92180 0.90029 0.97014 0.92787 0.94323 0.98631 0.92382 0.87477 0.88508 0.87425 0.91664 0.90779 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.62 113.37 1.20 1.37 16 2 O -0.38 -8.24 6.85 -148.98 -1.02 -9.26 16 3 C 0.10 2.31 2.23 29.84 0.07 2.38 16 4 H 0.11 2.12 7.73 -2.39 -0.02 2.10 16 5 C 0.53 16.43 7.27 87.65 0.64 17.07 16 6 O -0.58 -21.12 15.87 -3.04 -0.05 -21.17 16 7 N -0.62 -19.92 3.44 -843.16 -2.90 -22.82 16 8 C 0.11 3.69 7.97 86.30 0.69 4.38 16 9 C -0.11 -3.78 0.87 -52.02 -0.05 -3.83 16 10 C 0.15 4.96 6.52 86.30 0.56 5.52 16 11 C -0.07 -2.23 5.02 30.55 0.15 -2.08 16 12 C -0.12 -3.52 6.00 30.70 0.18 -3.33 16 13 C 0.14 5.32 6.46 86.35 0.56 5.88 16 14 N -0.61 -28.29 3.00 -699.57 -2.10 -30.39 16 15 C -0.25 -13.05 9.59 84.03 0.81 -12.24 16 16 H 0.07 3.37 7.85 -2.91 -0.02 3.35 16 17 C -0.05 -2.41 5.07 84.86 0.43 -1.98 16 18 N -0.94 -53.39 11.02 21.65 0.24 -53.15 16 19 Si 0.96 43.36 29.57 68.60 2.03 45.39 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 C 0.21 9.24 4.37 86.19 0.38 9.61 16 24 C -0.13 -2.84 2.79 -9.53 -0.03 -2.86 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 C -0.14 -1.91 4.82 32.06 0.15 -1.76 16 27 C 0.04 0.69 7.78 72.65 0.57 1.25 16 28 O -0.41 -9.95 11.36 -148.98 -1.69 -11.64 16 29 C 0.07 1.66 6.18 72.45 0.45 2.11 16 30 H 0.07 0.65 5.15 -2.38 -0.01 0.64 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.08 2.61 8.09 -2.39 -0.02 2.59 16 34 H 0.08 2.68 8.09 -2.39 -0.02 2.66 16 35 H 0.06 2.32 7.97 -2.39 -0.02 2.30 16 36 H 0.10 3.20 5.55 -2.39 -0.01 3.18 16 37 H 0.06 1.74 8.02 -2.38 -0.02 1.72 16 38 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.79 7.37 -2.39 -0.02 1.77 16 40 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 42 H 0.05 2.02 7.93 -2.38 -0.02 2.00 16 43 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 45 H 0.06 3.00 6.02 -2.39 -0.01 2.98 16 46 H 0.11 1.16 7.62 -2.39 -0.02 1.14 16 47 H 0.10 1.05 7.42 -2.39 -0.02 1.03 16 48 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.07 2.00 6.92 -2.38 -0.02 1.99 16 51 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -65.83 387.40 2.18 -63.65 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.91 Total: 17.90 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 6.76 Total: 21.49 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -4.75 Total: -106.36 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -2.76 Total: -42.07 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -65.83 2.18 -63.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981914318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.726 kcal (2) G-P(sol) polarization free energy of solvation -65.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds