Wall clock time and date at job start Tue Mar 31 2020 22:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99955 * 2 1 4 4 H 1.48500 * 109.47214 * 270.00371 * 3 2 1 5 5 H 1.48506 * 109.46888 * 29.99850 * 3 2 1 6 6 H 1.48495 * 109.47143 * 149.99635 * 3 2 1 7 7 C 1.38811 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99574 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00434 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00340 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47078 * 204.99829 * 10 9 7 12 12 C 1.53002 * 109.46920 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46822 * 59.99978 * 12 11 10 14 14 N 1.46505 * 109.47082 * 60.00081 * 13 12 11 15 15 C 1.34780 * 119.99529 * 154.99612 * 14 13 12 16 16 O 1.21274 * 120.00589 * 359.72940 * 15 14 13 17 17 C 1.50706 * 119.99336 * 179.97438 * 15 14 13 18 18 C 1.53036 * 109.46453 * 299.75423 * 17 15 14 19 19 C 1.53193 * 109.31442 * 178.60089 * 18 17 15 20 20 N 1.46920 * 108.76418 * 54.65399 * 19 18 17 21 21 C 1.34786 * 120.62854 * 126.36076 * 20 19 18 22 22 N 1.34773 * 119.99951 * 354.98414 * 21 20 19 23 23 O 1.21587 * 119.99884 * 174.98403 * 21 20 19 24 24 C 1.46928 * 118.74276 * 306.38574 * 20 19 18 25 25 C 1.53044 * 109.45772 * 179.69945 * 17 15 14 26 26 C 1.52995 * 109.47563 * 300.00061 * 13 12 11 27 27 C 1.52998 * 109.47278 * 59.99787 * 26 13 12 28 28 H 0.96994 * 120.00215 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99774 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46633 * 325.00219 * 10 9 7 31 31 H 1.08997 * 109.47373 * 60.00230 * 11 10 9 32 32 H 1.09002 * 109.47183 * 299.99784 * 11 10 9 33 33 H 1.09002 * 109.46916 * 300.00466 * 12 11 10 34 34 H 1.09000 * 109.47050 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.47379 * 179.97438 * 13 12 11 36 36 H 0.96995 * 119.99608 * 334.99969 * 14 13 12 37 37 H 1.08999 * 109.45803 * 59.73016 * 17 15 14 38 38 H 1.09002 * 109.49897 * 298.57325 * 18 17 15 39 39 H 1.09007 * 109.49634 * 58.66445 * 18 17 15 40 40 H 1.09002 * 109.59812 * 294.86833 * 19 18 17 41 41 H 1.09006 * 109.70031 * 174.50965 * 19 18 17 42 42 H 0.97001 * 119.99962 * 5.06569 * 22 21 20 43 43 H 0.97000 * 119.99806 * 185.05917 * 22 21 20 44 44 H 1.08998 * 109.58466 * 293.82079 * 24 20 19 45 45 H 1.08996 * 109.70037 * 173.46334 * 24 20 19 46 46 H 1.09001 * 109.49387 * 301.33551 * 25 17 15 47 47 H 1.08997 * 109.49853 * 61.43398 * 25 17 15 48 48 H 1.09002 * 109.47675 * 180.02562 * 26 13 12 49 49 H 1.09002 * 109.46830 * 300.00182 * 26 13 12 50 50 H 1.08997 * 109.47481 * 180.02562 * 27 26 13 51 51 H 1.09002 * 109.46868 * 60.00418 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.1814 -4.7519 -0.6123 12 6 1.9466 -6.0768 -0.6129 13 6 2.3099 -6.4564 0.8240 14 7 1.0855 -6.6000 1.6156 15 6 1.0794 -7.3857 2.7107 16 8 2.0860 -7.9776 3.0380 17 6 -0.1800 -7.5328 3.5253 18 6 -0.6068 -6.1626 4.0565 19 6 -1.9060 -6.3107 4.8546 20 7 -1.7069 -7.3265 5.8972 21 6 -1.9738 -7.0467 7.1884 22 7 -2.3306 -5.7976 7.5474 23 8 -1.8926 -7.9212 8.0293 24 6 -1.2108 -8.6530 5.5058 25 6 0.0804 -8.4785 4.7001 26 6 3.1866 -5.3614 1.4348 27 6 2.4214 -4.0365 1.4353 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.9693 -3.5502 -0.5903 31 1 0.9229 -4.4816 -1.6362 32 1 0.2702 -4.8584 -0.0236 33 1 2.8576 -5.9699 -1.2018 34 1 1.3219 -6.8570 -1.0476 35 1 2.8547 -7.4005 0.8238 36 1 0.2794 -6.1296 1.3515 37 1 -0.9721 -7.9421 2.8984 38 1 0.1745 -5.7637 4.7035 39 1 -0.7694 -5.4827 3.2201 40 1 -2.7104 -6.6233 4.1888 41 1 -2.1638 -5.3579 5.3170 42 1 -2.4669 -5.1182 6.8687 43 1 -2.4512 -5.5782 8.4845 44 1 -1.9586 -9.1565 4.8931 45 1 -1.0081 -9.2471 6.3968 46 1 0.4069 -9.4472 4.3219 47 1 0.8551 -8.0577 5.3411 48 1 3.4458 -5.6320 2.4584 49 1 4.0976 -5.2546 0.8458 50 1 3.0461 -3.2562 1.8701 51 1 1.5105 -4.1433 2.0243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026603570.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:01 Heat of formation + Delta-G solvation = -70.568375 kcal Electronic energy + Delta-G solvation = -30669.947127 eV Core-core repulsion = 26603.529024 eV Total energy + Delta-G solvation = -4066.418103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.86814 -40.03421 -38.32351 -37.09115 -34.71355 -34.22893 -33.16077 -32.42961 -31.21605 -30.63207 -30.48848 -27.79909 -26.19044 -23.77831 -23.57945 -22.52267 -22.23379 -21.05694 -20.65483 -19.73646 -18.90145 -18.74871 -17.36587 -17.17546 -17.06701 -15.73277 -15.69727 -15.47044 -15.28020 -15.03760 -14.67184 -14.54197 -14.11647 -13.97100 -13.67903 -13.59523 -13.47586 -13.31943 -12.94951 -12.73013 -12.41172 -12.30306 -12.06071 -11.90159 -11.66848 -11.60744 -11.09315 -11.05025 -10.95211 -10.90776 -10.86205 -10.44805 -10.42516 -10.22459 -10.17355 -9.94541 -9.77507 -9.73849 -9.62001 -8.98444 -8.90830 -8.85538 -7.00349 -5.82249 -3.10313 2.49031 2.63118 2.94367 3.19915 3.39274 3.45351 3.46147 3.81333 4.34265 4.36224 4.51872 4.53808 4.72930 4.88986 4.94197 5.00787 5.04682 5.08269 5.09928 5.17490 5.34813 5.45011 5.46439 5.52602 5.54824 5.63568 5.66499 5.71780 5.79573 5.83343 5.89056 5.96949 6.04074 6.05262 6.14812 6.22118 6.31061 6.45368 6.48128 6.49938 6.61447 6.66001 6.71377 6.93171 7.07539 7.54021 7.56654 7.65968 8.24319 8.35421 8.36921 9.48188 10.05843 10.40292 11.40474 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011051 B = 0.002922 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.996637 B = 9581.012946 C =11441.521540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.178 3.822 11 C -0.124 4.124 12 C -0.122 4.122 13 C 0.148 3.852 14 N -0.716 5.716 15 C 0.517 3.483 16 O -0.544 6.544 17 C -0.106 4.106 18 C -0.129 4.129 19 C 0.113 3.887 20 N -0.628 5.628 21 C 0.710 3.290 22 N -0.869 5.869 23 O -0.596 6.596 24 C 0.129 3.871 25 C -0.114 4.114 26 C -0.128 4.128 27 C -0.130 4.130 28 H 0.254 0.746 29 H 0.382 0.618 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.400 0.600 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.397 0.603 43 H 0.413 0.587 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.059 0.941 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -15.890 6.254 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.068 3.932 11 C -0.162 4.162 12 C -0.161 4.161 13 C 0.043 3.957 14 N -0.368 5.368 15 C 0.303 3.697 16 O -0.421 6.421 17 C -0.128 4.128 18 C -0.167 4.167 19 C -0.010 4.010 20 N -0.367 5.367 21 C 0.410 3.590 22 N -0.439 5.439 23 O -0.475 6.475 24 C 0.006 3.994 25 C -0.152 4.152 26 C -0.167 4.167 27 C -0.171 4.171 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.236 0.764 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.228 0.772 43 H 0.245 0.755 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.078 0.922 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.942 -16.841 6.893 18.619 hybrid contribution -0.336 1.891 -0.155 1.926 sum -4.278 -14.950 6.738 16.948 Atomic orbital electron populations 1.69648 1.05064 1.25596 1.57979 1.24712 0.95501 0.97612 1.03128 0.86228 0.78707 0.83972 0.77531 1.21755 1.21811 1.20798 1.19235 0.90978 0.84162 1.42356 0.91284 1.42410 1.05661 0.99814 1.88631 1.20227 0.94323 0.85825 0.92861 1.21806 0.98545 0.94301 1.01560 1.21799 1.01486 0.97795 0.95011 1.20964 0.85443 0.98964 0.90289 1.46166 1.14696 1.48361 1.27595 1.20516 0.89904 0.78493 0.80763 1.90686 1.35004 1.46953 1.69453 1.21322 0.96439 0.97743 0.97278 1.21944 0.98011 0.95853 1.00915 1.21661 0.97527 0.91617 0.90214 1.47289 1.69678 1.14604 1.05108 1.15849 0.77561 0.83087 0.82481 1.43190 1.77142 1.11063 1.12489 1.90951 1.60445 1.46191 1.49903 1.21532 0.94744 0.83004 1.00126 1.21758 0.97555 1.00147 0.95764 1.21919 0.98399 0.95681 1.00747 1.22196 0.99528 0.94820 1.00523 0.93580 0.78450 0.93605 0.91504 0.92713 0.90435 0.91843 0.90059 0.76380 0.88358 0.90505 0.89535 0.90638 0.89924 0.77176 0.75480 0.91487 0.88509 0.89760 0.90655 0.92389 0.91515 0.92247 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -16.84 5.12 -53.42 -0.27 -17.11 16 10 C 0.18 3.17 2.77 -67.93 -0.19 2.99 16 11 C -0.12 -1.72 5.22 -26.73 -0.14 -1.86 16 12 C -0.12 -1.38 5.61 -26.73 -0.15 -1.53 16 13 C 0.15 1.78 2.79 -67.93 -0.19 1.59 16 14 N -0.72 -7.82 4.12 -53.80 -0.22 -8.04 16 15 C 0.52 6.10 7.12 -10.98 -0.08 6.02 16 16 O -0.54 -8.45 15.64 5.56 0.09 -8.37 16 17 C -0.11 -0.91 2.49 -91.73 -0.23 -1.14 16 18 C -0.13 -1.02 5.27 -26.61 -0.14 -1.16 16 19 C 0.11 0.75 6.43 -3.71 -0.02 0.72 16 20 N -0.63 -5.68 2.97 -178.50 -0.53 -6.21 16 21 C 0.71 7.91 8.57 -86.91 -0.75 7.17 16 22 N -0.87 -6.44 8.79 27.64 0.24 -6.20 16 23 O -0.60 -9.13 16.62 5.29 0.09 -9.04 16 24 C 0.13 1.14 6.41 -3.71 -0.02 1.11 16 25 C -0.11 -1.06 4.65 -26.61 -0.12 -1.18 16 26 C -0.13 -1.79 5.60 -26.73 -0.15 -1.94 16 27 C -0.13 -2.15 5.35 -26.73 -0.14 -2.29 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.38 9.38 7.80 -40.82 -0.32 9.06 16 30 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.71 6.51 -51.93 -0.34 0.37 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.04 7.57 -51.93 -0.39 0.64 16 36 H 0.40 3.84 6.28 -40.82 -0.26 3.59 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.64 7.54 -51.93 -0.39 0.25 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.42 5.56 -51.93 -0.29 0.13 16 42 H 0.40 2.02 6.29 -40.82 -0.26 1.77 16 43 H 0.41 2.63 8.93 -40.82 -0.36 2.27 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 1.00 7.04 -51.93 -0.37 0.64 16 46 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.05 0.87 7.60 -51.93 -0.39 0.48 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -34.48 393.86 -9.94 -44.42 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -8.40 Total: 12.53 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.57 Total: 1.62 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -0.06 Total: -63.86 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.48 -9.94 -44.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026603570.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.149 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds