Wall clock time and date at job start Tue Mar 31 2020 21:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99919 * 2 1 4 4 H 1.08992 * 109.57229 * 330.15870 * 3 2 1 5 5 C 1.53090 * 109.51809 * 90.31442 * 3 2 1 6 6 O 1.42929 * 109.41942 * 177.51889 * 5 3 2 7 7 C 1.42907 * 114.08177 * 298.84381 * 6 5 3 8 8 C 1.53097 * 109.42103 * 61.15246 * 7 6 5 9 9 C 1.53174 * 109.16498 * 302.38476 * 8 7 6 10 10 H 1.08996 * 109.54442 * 297.11640 * 9 8 7 11 11 C 1.52998 * 109.54626 * 176.84536 * 9 8 7 12 12 C 1.50703 * 109.46976 * 65.00174 * 11 9 8 13 13 O 1.21279 * 120.00071 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99747 * 180.02562 * 12 11 9 15 15 C 1.47165 * 120.70555 * 179.97438 * 14 12 11 16 16 C 1.53883 * 108.02923 * 132.75556 * 15 14 12 17 17 H 1.09000 * 112.10143 * 182.54480 * 16 15 14 18 18 C 1.54547 * 107.83235 * 306.50462 * 16 15 14 19 19 C 1.54283 * 104.84891 * 89.07213 * 18 16 15 20 20 C 1.54545 * 104.85046 * 359.97438 * 19 18 16 21 21 H 1.08994 * 112.18569 * 146.40770 * 20 19 18 22 22 C 1.47159 * 120.71337 * 359.71838 * 14 12 11 23 23 N 1.48310 * 107.20764 * 58.36402 * 16 15 14 24 24 C 1.36936 * 128.07806 * 106.72827 * 23 16 15 25 25 H 1.07995 * 120.00215 * 14.94619 * 24 23 16 26 26 C 1.38813 * 119.99563 * 194.95585 * 24 23 16 27 27 N 1.31622 * 120.00451 * 9.26895 * 26 24 23 28 28 Si 1.86799 * 119.99760 * 189.26890 * 26 24 23 29 29 H 1.48504 * 109.47030 * 0.02562 * 28 26 24 30 30 H 1.48495 * 109.47404 * 120.00079 * 28 26 24 31 31 H 1.48507 * 109.47444 * 240.00323 * 28 26 24 32 32 H 1.09005 * 109.46805 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47182 * 299.99822 * 1 2 3 34 34 H 1.08998 * 109.46775 * 60.00196 * 1 2 3 35 35 H 1.09006 * 109.48255 * 297.49065 * 5 3 2 36 36 H 1.08996 * 109.48768 * 57.52378 * 5 3 2 37 37 H 1.08996 * 109.48244 * 301.16816 * 7 6 5 38 38 H 1.08997 * 109.48206 * 181.13977 * 7 6 5 39 39 H 1.09002 * 109.52164 * 62.29308 * 8 7 6 40 40 H 1.09003 * 109.52387 * 182.47677 * 8 7 6 41 41 H 1.08997 * 109.47620 * 185.00310 * 11 9 8 42 42 H 1.09001 * 109.47124 * 305.00137 * 11 9 8 43 43 H 1.08993 * 109.75216 * 252.38890 * 15 14 12 44 44 H 1.09005 * 109.75296 * 13.07630 * 15 14 12 45 45 H 1.09002 * 110.36510 * 207.91570 * 18 16 15 46 46 H 1.09001 * 110.36497 * 330.11966 * 18 16 15 47 47 H 1.09005 * 110.35941 * 118.84208 * 19 18 16 48 48 H 1.09001 * 110.36644 * 241.15447 * 19 18 16 49 49 H 1.09002 * 109.74819 * 346.87831 * 22 14 12 50 50 H 1.09001 * 109.75072 * 107.60871 * 22 14 12 51 51 H 0.96996 * 120.00050 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0014 -0.5110 5 6 2.2255 1.7696 1.4429 6 8 2.8597 3.0505 1.4405 7 6 4.1471 3.0626 0.8205 8 6 4.0091 2.6504 -0.6475 9 6 3.3607 1.2646 -0.7218 10 1 4.0092 0.5324 -0.2408 11 6 3.1466 0.8775 -2.1864 12 6 4.4829 0.7285 -2.8671 13 8 5.5057 0.9141 -2.2424 14 7 4.5412 0.3899 -4.1703 15 6 5.8376 0.2407 -4.8507 16 6 5.8101 -1.0774 -5.6443 17 1 6.7595 -1.2768 -6.1413 18 6 5.4132 -2.2088 -4.6691 19 6 3.8722 -2.2570 -4.7257 20 6 3.4778 -1.1500 -5.7294 21 1 2.5878 -1.4115 -6.3017 22 6 3.3102 0.1561 -4.9420 23 7 4.6735 -0.9944 -6.5934 24 6 4.7177 -0.8160 -7.9504 25 1 5.6463 -0.9567 -8.4836 26 6 3.5690 -0.4542 -8.6406 27 7 2.4860 -0.1053 -7.9789 28 14 3.5601 -0.4624 -10.5085 29 1 4.8917 -0.8901 -11.0080 30 1 2.5228 -1.4073 -10.9945 31 1 3.2589 0.9033 -11.0082 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.2628 1.8417 1.9491 36 1 2.8580 1.0517 1.9652 37 1 4.8048 2.3617 1.3345 38 1 4.5689 4.0660 0.8781 39 1 3.3842 3.3735 -1.1717 40 1 4.9952 2.6164 -1.1106 41 1 2.6056 -0.0674 -2.2372 42 1 2.5686 1.6544 -2.6868 43 1 5.9947 1.0773 -5.5314 44 1 6.6395 0.2106 -4.1130 45 1 5.8348 -3.1585 -4.9982 46 1 5.7502 -1.9747 -3.6592 47 1 3.5361 -3.2306 -5.0827 48 1 3.4497 -2.0458 -3.7433 49 1 2.4612 0.0699 -4.2638 50 1 3.1469 0.9820 -5.6343 51 1 1.6832 0.1472 -8.4612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029334574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:04 Heat of formation + Delta-G solvation = -93.823191 kcal Electronic energy + Delta-G solvation = -31959.999830 eV Core-core repulsion = 27860.280571 eV Total energy + Delta-G solvation = -4099.719259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.42439 -39.61640 -37.82437 -37.40794 -34.19071 -33.69986 -32.46315 -30.77986 -30.51915 -29.27716 -28.85735 -26.77092 -26.11333 -24.24235 -23.68358 -23.21446 -22.99113 -20.42830 -19.77862 -19.49808 -18.47290 -17.29989 -16.90087 -16.47775 -16.13263 -15.83984 -15.53474 -15.45945 -15.16600 -14.78826 -14.52713 -14.38462 -13.82663 -13.62711 -13.47153 -13.13592 -13.00192 -12.79775 -12.59114 -12.48553 -12.27306 -11.82205 -11.76385 -11.71563 -11.59272 -11.32027 -11.11608 -10.96375 -10.92086 -10.79815 -10.77618 -10.48968 -10.35219 -10.17457 -10.05304 -9.85632 -9.64668 -9.56971 -9.44378 -9.14699 -8.77757 -8.04183 -6.87592 -5.89381 -3.23361 3.13209 3.32298 3.38330 3.39698 3.40933 3.60325 3.90749 4.38441 4.55061 4.59987 4.71766 4.93390 4.98618 5.12210 5.13643 5.20453 5.22181 5.26587 5.29672 5.42481 5.46632 5.51169 5.55987 5.61346 5.68334 5.72376 5.78616 5.81148 5.82042 5.94195 5.96867 6.05491 6.12549 6.23207 6.26574 6.31858 6.39707 6.54001 6.61382 6.64298 6.72658 6.83761 6.88204 6.97026 7.14852 7.24751 7.44895 7.62949 8.07856 8.12770 8.72115 9.01753 9.63723 10.40628 11.24201 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.003140 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.799964 B = 8915.014912 C = 9326.094551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.059 3.941 4 H 0.070 0.930 5 C 0.044 3.956 6 O -0.382 6.382 7 C 0.059 3.941 8 C -0.153 4.153 9 C -0.066 4.066 10 H 0.086 0.914 11 C -0.131 4.131 12 C 0.510 3.490 13 O -0.566 6.566 14 N -0.591 5.591 15 C 0.102 3.898 16 C 0.134 3.866 17 H 0.077 0.923 18 C -0.124 4.124 19 C -0.136 4.136 20 C 0.167 3.833 21 H 0.120 0.880 22 C 0.103 3.897 23 N -0.585 5.585 24 C -0.223 4.223 25 H 0.077 0.923 26 C -0.004 4.004 27 N -0.916 5.916 28 Si 0.912 3.088 29 H -0.280 1.280 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.060 0.940 50 H 0.082 0.918 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 1.989 15.621 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.001 3.999 4 H 0.088 0.912 5 C -0.034 4.034 6 O -0.300 6.300 7 C -0.017 4.017 8 C -0.191 4.191 9 C -0.085 4.085 10 H 0.105 0.895 11 C -0.170 4.170 12 C 0.298 3.702 13 O -0.447 6.447 14 N -0.322 5.322 15 C -0.022 4.022 16 C 0.025 3.975 17 H 0.095 0.905 18 C -0.163 4.163 19 C -0.175 4.175 20 C 0.060 3.940 21 H 0.137 0.863 22 C -0.020 4.020 23 N -0.306 5.306 24 C -0.351 4.351 25 H 0.095 0.905 26 C -0.201 4.201 27 N -0.563 5.563 28 Si 0.742 3.258 29 H -0.205 1.205 30 H -0.217 1.217 31 H -0.218 1.218 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.100 0.900 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.313 2.144 15.737 16.050 hybrid contribution -0.348 0.035 -1.207 1.257 sum -2.662 2.179 14.530 14.931 Atomic orbital electron populations 1.22838 0.81008 1.02930 1.00042 1.87943 1.19671 1.26960 1.94952 1.22868 0.95591 0.85157 0.96295 0.91179 1.22989 0.98372 0.85810 0.96188 1.87927 1.32774 1.29964 1.79369 1.22668 0.84400 1.02182 0.92481 1.22409 1.03913 0.95484 0.97279 1.21001 0.94538 0.98386 0.94567 0.89520 1.21637 0.96294 1.04042 0.95071 1.20473 0.91027 0.76846 0.81839 1.90567 1.36613 1.52915 1.64598 1.48225 1.08639 1.66203 1.09113 1.22324 0.84703 0.99676 0.95529 1.21969 0.93274 0.92004 0.90238 0.90505 1.22471 0.96620 0.98624 0.98561 1.22647 0.95616 1.00182 0.99047 1.21794 0.93904 0.89455 0.88866 0.86282 1.22503 0.83473 1.02128 0.93936 1.45177 0.99768 1.83524 1.02130 1.19071 0.96304 1.39395 0.80300 0.90517 1.24805 0.96769 1.00363 0.98136 1.69824 1.02590 1.50154 1.33714 0.86054 0.77448 0.77211 0.85057 1.20485 1.21688 1.21796 0.89452 0.94218 0.93665 0.89086 0.92305 0.92866 0.88713 0.91528 0.87883 0.88335 0.89491 0.92164 0.90773 0.92805 0.92694 0.92788 0.93136 0.92129 0.89992 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.37 9.75 -35.23 -0.34 -4.72 16 3 C 0.06 0.67 2.21 -26.59 -0.06 0.61 16 4 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 5 C 0.04 0.46 6.47 37.20 0.24 0.70 16 6 O -0.38 -4.54 10.77 -35.23 -0.38 -4.92 16 7 C 0.06 0.65 6.84 37.21 0.25 0.90 16 8 C -0.15 -1.90 5.12 -26.59 -0.14 -2.04 16 9 C -0.07 -0.85 1.64 -90.44 -0.15 -1.00 16 10 H 0.09 1.25 7.97 -51.93 -0.41 0.84 16 11 C -0.13 -1.85 3.50 -27.88 -0.10 -1.94 16 12 C 0.51 8.87 7.44 -10.98 -0.08 8.79 16 13 O -0.57 -10.87 13.44 5.56 0.07 -10.80 16 14 N -0.59 -11.00 2.26 -171.81 -0.39 -11.38 16 15 C 0.10 1.97 5.90 -3.22 -0.02 1.96 16 16 C 0.13 2.66 4.32 -65.66 -0.28 2.38 16 17 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 18 C -0.12 -2.24 6.18 -25.25 -0.16 -2.40 16 19 C -0.14 -2.52 6.18 -25.25 -0.16 -2.68 16 20 C 0.17 3.59 3.11 -65.88 -0.21 3.38 16 21 H 0.12 2.89 6.36 -51.93 -0.33 2.56 16 22 C 0.10 2.02 5.67 -3.46 -0.02 2.00 16 23 N -0.58 -13.65 2.81 -152.84 -0.43 -14.08 16 24 C -0.22 -5.74 10.37 -15.06 -0.16 -5.90 16 25 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 26 C 0.00 -0.10 5.42 -17.43 -0.09 -0.20 16 27 N -0.92 -24.21 10.42 55.49 0.58 -23.63 16 28 Si 0.91 20.87 29.56 -169.99 -5.03 15.85 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 31 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.28 7.96 -51.93 -0.41 -0.13 16 34 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.09 0.81 7.96 -51.93 -0.41 0.40 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.48 6.03 -51.93 -0.31 1.17 16 41 H 0.10 1.39 7.10 -51.93 -0.37 1.02 16 42 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.39 7.11 -51.93 -0.37 1.02 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.98 7.84 -51.93 -0.41 0.57 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.05 0.87 7.83 -51.93 -0.41 0.47 16 49 H 0.06 1.03 6.09 -51.93 -0.32 0.71 16 50 H 0.08 1.86 7.83 -51.93 -0.41 1.45 16 51 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -28.44 384.99 -8.89 -37.33 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.75 Total: 4.67 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.02 Total: 5.89 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.24 Total: -49.10 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.65 Total: -20.44 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.44 -8.89 -37.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029334574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.496 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds