Wall clock time and date at job start Tue Mar 31 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99919 * 2 1 4 4 H 1.08992 * 109.57229 * 330.15870 * 3 2 1 5 5 C 1.53090 * 109.51809 * 90.31442 * 3 2 1 6 6 O 1.42929 * 109.41942 * 177.51889 * 5 3 2 7 7 C 1.42907 * 114.08177 * 298.84381 * 6 5 3 8 8 C 1.53097 * 109.42103 * 61.15246 * 7 6 5 9 9 C 1.53174 * 109.16498 * 302.38476 * 8 7 6 10 10 H 1.08996 * 109.54442 * 297.11640 * 9 8 7 11 11 C 1.52998 * 109.54626 * 176.84536 * 9 8 7 12 12 C 1.50703 * 109.46976 * 65.00174 * 11 9 8 13 13 O 1.21279 * 120.00071 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99747 * 180.02562 * 12 11 9 15 15 C 1.47165 * 120.70555 * 179.97438 * 14 12 11 16 16 C 1.53883 * 108.02923 * 132.75556 * 15 14 12 17 17 H 1.09000 * 112.10143 * 182.54480 * 16 15 14 18 18 C 1.54547 * 107.83235 * 306.50462 * 16 15 14 19 19 C 1.54283 * 104.84891 * 89.07213 * 18 16 15 20 20 C 1.54545 * 104.85046 * 359.97438 * 19 18 16 21 21 H 1.08994 * 112.18569 * 146.40770 * 20 19 18 22 22 C 1.47159 * 120.71337 * 359.71838 * 14 12 11 23 23 N 1.48310 * 107.20764 * 58.36402 * 16 15 14 24 24 C 1.36936 * 128.07806 * 106.72827 * 23 16 15 25 25 H 1.07995 * 120.00215 * 14.94619 * 24 23 16 26 26 C 1.38813 * 119.99563 * 194.95585 * 24 23 16 27 27 N 1.31622 * 120.00451 * 9.26895 * 26 24 23 28 28 Si 1.86799 * 119.99760 * 189.26890 * 26 24 23 29 29 H 1.48504 * 109.47030 * 0.02562 * 28 26 24 30 30 H 1.48495 * 109.47404 * 120.00079 * 28 26 24 31 31 H 1.48507 * 109.47444 * 240.00323 * 28 26 24 32 32 H 1.09005 * 109.46805 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47182 * 299.99822 * 1 2 3 34 34 H 1.08998 * 109.46775 * 60.00196 * 1 2 3 35 35 H 1.09006 * 109.48255 * 297.49065 * 5 3 2 36 36 H 1.08996 * 109.48768 * 57.52378 * 5 3 2 37 37 H 1.08996 * 109.48244 * 301.16816 * 7 6 5 38 38 H 1.08997 * 109.48206 * 181.13977 * 7 6 5 39 39 H 1.09002 * 109.52164 * 62.29308 * 8 7 6 40 40 H 1.09003 * 109.52387 * 182.47677 * 8 7 6 41 41 H 1.08997 * 109.47620 * 185.00310 * 11 9 8 42 42 H 1.09001 * 109.47124 * 305.00137 * 11 9 8 43 43 H 1.08993 * 109.75216 * 252.38890 * 15 14 12 44 44 H 1.09005 * 109.75296 * 13.07630 * 15 14 12 45 45 H 1.09002 * 110.36510 * 207.91570 * 18 16 15 46 46 H 1.09001 * 110.36497 * 330.11966 * 18 16 15 47 47 H 1.09005 * 110.35941 * 118.84208 * 19 18 16 48 48 H 1.09001 * 110.36644 * 241.15447 * 19 18 16 49 49 H 1.09002 * 109.74819 * 346.87831 * 22 14 12 50 50 H 1.09001 * 109.75072 * 107.60871 * 22 14 12 51 51 H 0.96996 * 120.00050 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0014 -0.5110 5 6 2.2255 1.7696 1.4429 6 8 2.8597 3.0505 1.4405 7 6 4.1471 3.0626 0.8205 8 6 4.0091 2.6504 -0.6475 9 6 3.3607 1.2646 -0.7218 10 1 4.0092 0.5324 -0.2408 11 6 3.1466 0.8775 -2.1864 12 6 4.4829 0.7285 -2.8671 13 8 5.5057 0.9141 -2.2424 14 7 4.5412 0.3899 -4.1703 15 6 5.8376 0.2407 -4.8507 16 6 5.8101 -1.0774 -5.6443 17 1 6.7595 -1.2768 -6.1413 18 6 5.4132 -2.2088 -4.6691 19 6 3.8722 -2.2570 -4.7257 20 6 3.4778 -1.1500 -5.7294 21 1 2.5878 -1.4115 -6.3017 22 6 3.3102 0.1561 -4.9420 23 7 4.6735 -0.9944 -6.5934 24 6 4.7177 -0.8160 -7.9504 25 1 5.6463 -0.9567 -8.4836 26 6 3.5690 -0.4542 -8.6406 27 7 2.4860 -0.1053 -7.9789 28 14 3.5601 -0.4624 -10.5085 29 1 4.8917 -0.8901 -11.0080 30 1 2.5228 -1.4073 -10.9945 31 1 3.2589 0.9033 -11.0082 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.2628 1.8417 1.9491 36 1 2.8580 1.0517 1.9652 37 1 4.8048 2.3617 1.3345 38 1 4.5689 4.0660 0.8781 39 1 3.3842 3.3735 -1.1717 40 1 4.9952 2.6164 -1.1106 41 1 2.6056 -0.0674 -2.2372 42 1 2.5686 1.6544 -2.6868 43 1 5.9947 1.0773 -5.5314 44 1 6.6395 0.2106 -4.1130 45 1 5.8348 -3.1585 -4.9982 46 1 5.7502 -1.9747 -3.6592 47 1 3.5361 -3.2306 -5.0827 48 1 3.4497 -2.0458 -3.7433 49 1 2.4612 0.0699 -4.2638 50 1 3.1469 0.9820 -5.6343 51 1 1.6832 0.1472 -8.4612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029334574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:03 Heat of formation + Delta-G solvation = -109.752474 kcal Electronic energy + Delta-G solvation = -31960.690576 eV Core-core repulsion = 27860.280571 eV Total energy + Delta-G solvation = -4100.410005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.74847 -40.76481 -39.28141 -38.23507 -35.39802 -35.20891 -34.22759 -32.33751 -31.39502 -31.05356 -30.01450 -27.68407 -27.45890 -25.72583 -25.37956 -24.24923 -24.06683 -21.51530 -21.34171 -20.94692 -20.11418 -18.65658 -17.97710 -17.56274 -17.38161 -17.13890 -16.85520 -16.62006 -16.37632 -16.16346 -15.64666 -15.63308 -15.42246 -14.80993 -14.68659 -14.57810 -14.40013 -14.08228 -13.77969 -13.64557 -13.52281 -13.40379 -13.17717 -13.05949 -12.86476 -12.75853 -12.56450 -12.52905 -12.25892 -11.99430 -11.96937 -11.80165 -11.71068 -11.48318 -11.46960 -11.35059 -11.13000 -11.02595 -10.87239 -10.54565 -10.13404 -9.66864 -8.69443 -7.85343 -5.19498 1.48523 1.51396 1.59256 1.72370 2.14841 2.51532 2.58488 3.07862 3.34354 3.46479 3.52267 3.62810 3.79575 3.90806 4.05123 4.10681 4.13978 4.20872 4.22171 4.31673 4.34998 4.39937 4.45997 4.47881 4.51509 4.57433 4.60149 4.72772 4.73957 4.75717 4.81443 4.82833 4.84471 4.92939 5.00134 5.04234 5.04693 5.07708 5.15783 5.20469 5.26032 5.35904 5.37155 5.55482 5.62744 5.85284 6.02163 6.24109 6.33731 6.63421 7.08969 7.27678 7.72629 8.52225 9.26519 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.003140 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.799964 B = 8915.014912 C = 9326.094551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.395 6.395 3 C 0.066 3.934 4 H 0.077 0.923 5 C 0.043 3.957 6 O -0.390 6.390 7 C 0.061 3.939 8 C -0.149 4.149 9 C -0.063 4.063 10 H 0.070 0.930 11 C -0.123 4.123 12 C 0.510 3.490 13 O -0.581 6.581 14 N -0.594 5.594 15 C 0.109 3.891 16 C 0.129 3.871 17 H 0.081 0.919 18 C -0.113 4.113 19 C -0.126 4.126 20 C 0.163 3.837 21 H 0.089 0.911 22 C 0.120 3.880 23 N -0.605 5.605 24 C -0.234 4.234 25 H 0.073 0.927 26 C -0.049 4.049 27 N -0.932 5.932 28 Si 0.968 3.032 29 H -0.273 1.273 30 H -0.293 1.293 31 H -0.296 1.296 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.110 0.890 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.039 0.961 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.088 0.912 50 H 0.046 0.954 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 1.739 17.127 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.007 3.993 4 H 0.095 0.905 5 C -0.034 4.034 6 O -0.309 6.309 7 C -0.015 4.015 8 C -0.187 4.187 9 C -0.082 4.082 10 H 0.089 0.911 11 C -0.163 4.163 12 C 0.300 3.700 13 O -0.463 6.463 14 N -0.325 5.325 15 C -0.016 4.016 16 C 0.021 3.979 17 H 0.099 0.901 18 C -0.152 4.152 19 C -0.165 4.165 20 C 0.056 3.944 21 H 0.107 0.893 22 C -0.005 4.005 23 N -0.327 5.327 24 C -0.363 4.363 25 H 0.091 0.909 26 C -0.244 4.244 27 N -0.580 5.580 28 Si 0.798 3.202 29 H -0.198 1.198 30 H -0.220 1.220 31 H -0.224 1.224 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.106 0.894 50 H 0.064 0.936 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.883 1.886 17.273 17.613 hybrid contribution -0.138 0.115 -1.645 1.655 sum -3.021 2.001 15.628 16.043 Atomic orbital electron populations 1.23029 0.79452 1.03961 1.01000 1.87916 1.21402 1.26984 1.95081 1.22762 0.94551 0.85410 0.96548 0.90524 1.23078 0.99203 0.85280 0.95831 1.87921 1.32990 1.30711 1.79317 1.22691 0.84362 1.03131 0.91340 1.22321 1.02644 0.95417 0.98283 1.20962 0.95563 0.98065 0.93638 0.91145 1.21638 0.94249 1.04719 0.95662 1.21018 0.92110 0.75717 0.81135 1.90567 1.37695 1.53302 1.64765 1.48224 1.07927 1.66817 1.09579 1.22144 0.85517 0.98607 0.95330 1.22128 0.92664 0.92953 0.90116 0.90060 1.22373 0.96210 0.98279 0.98314 1.22549 0.95939 0.99134 0.98895 1.21740 0.92333 0.91271 0.89105 0.89331 1.22174 0.84705 0.99793 0.93785 1.45357 1.01513 1.83778 1.02017 1.19289 0.96221 1.38958 0.81856 0.90874 1.25426 0.96763 1.00816 1.01377 1.69972 1.02672 1.50863 1.34494 0.85172 0.77343 0.76508 0.81164 1.19827 1.21985 1.22353 0.88483 0.92631 0.93340 0.87166 0.92424 0.92738 0.87203 0.91216 0.90031 0.87728 0.88430 0.94212 0.89984 0.91710 0.91923 0.92493 0.91458 0.89428 0.93559 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.39 -8.25 9.75 -148.98 -1.45 -9.70 16 3 C 0.07 1.33 2.21 30.68 0.07 1.40 16 4 H 0.08 1.46 7.79 -2.39 -0.02 1.44 16 5 C 0.04 0.81 6.47 72.01 0.47 1.27 16 6 O -0.39 -8.46 10.77 -148.98 -1.60 -10.06 16 7 C 0.06 1.25 6.84 72.01 0.49 1.74 16 8 C -0.15 -3.53 5.12 30.68 0.16 -3.37 16 9 C -0.06 -1.54 1.64 -10.68 -0.02 -1.56 16 10 H 0.07 1.96 7.97 -2.39 -0.02 1.94 16 11 C -0.12 -3.28 3.50 29.85 0.10 -3.17 16 12 C 0.51 17.21 7.44 87.66 0.65 17.86 16 13 O -0.58 -21.87 13.44 -3.03 -0.04 -21.91 16 14 N -0.59 -21.76 2.26 -815.89 -1.85 -23.61 16 15 C 0.11 4.19 5.90 86.55 0.51 4.70 16 16 C 0.13 5.07 4.32 45.47 0.20 5.27 16 17 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 18 C -0.11 -3.90 6.18 31.56 0.20 -3.70 16 19 C -0.13 -4.49 6.18 31.55 0.20 -4.29 16 20 C 0.16 6.96 3.11 45.31 0.14 7.10 16 21 H 0.09 4.37 6.36 -2.39 -0.02 4.35 16 22 C 0.12 4.64 5.67 86.40 0.49 5.13 16 23 N -0.60 -28.42 2.81 -637.46 -1.79 -30.21 16 24 C -0.23 -12.24 10.37 84.03 0.87 -11.36 16 25 H 0.07 3.76 7.85 -2.91 -0.02 3.74 16 26 C -0.05 -2.58 5.42 84.86 0.46 -2.12 16 27 N -0.93 -50.22 10.42 21.65 0.23 -50.00 16 28 Si 0.97 43.41 29.56 68.60 2.03 45.43 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 30 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 31 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 32 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 0.63 7.96 -2.39 -0.02 0.61 16 34 H 0.05 0.67 8.09 -2.39 -0.02 0.65 16 35 H 0.11 1.64 7.96 -2.38 -0.02 1.62 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 2.31 6.03 -2.39 -0.01 2.29 16 41 H 0.10 2.70 7.10 -2.39 -0.02 2.68 16 42 H 0.10 2.42 8.07 -2.39 -0.02 2.40 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 3.02 7.11 -2.38 -0.02 3.00 16 45 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.06 2.08 7.84 -2.39 -0.02 2.06 16 47 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.07 2.16 7.83 -2.39 -0.02 2.14 16 49 H 0.09 2.87 6.09 -2.39 -0.01 2.86 16 50 H 0.05 2.14 7.83 -2.39 -0.02 2.12 16 51 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 Total: -1.00 -60.73 384.99 2.63 -58.10 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.90 Total: 25.52 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 6.21 Total: 16.43 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -3.41 Total: -103.81 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -3.10 Total: -41.67 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -60.73 2.63 -58.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029334574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.653 kcal (2) G-P(sol) polarization free energy of solvation -60.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds