Wall clock time and date at job start Tue Mar 31 2020 21:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99977 * 2 1 4 4 H 1.08997 * 109.57966 * 330.16213 * 3 2 1 5 5 C 1.53091 * 109.52089 * 90.32109 * 3 2 1 6 6 O 1.42907 * 109.41328 * 62.29292 * 5 3 2 7 7 C 1.42897 * 114.09743 * 61.16324 * 6 5 3 8 8 C 1.53097 * 109.41513 * 298.83805 * 7 6 5 9 9 C 1.53179 * 109.52336 * 210.00436 * 3 2 1 10 10 H 1.09002 * 109.62013 * 177.16834 * 9 3 2 11 11 C 1.53000 * 109.54214 * 56.94260 * 9 3 2 12 12 C 1.50703 * 109.47025 * 175.44609 * 11 9 3 13 13 O 1.21280 * 119.99815 * 359.97438 * 12 11 9 14 14 N 1.34776 * 119.99829 * 180.02562 * 12 11 9 15 15 C 1.47167 * 120.70877 * 179.97438 * 14 12 11 16 16 C 1.53883 * 108.02732 * 132.75124 * 15 14 12 17 17 H 1.09001 * 112.09494 * 181.90925 * 16 15 14 18 18 C 1.54791 * 107.88733 * 306.48557 * 16 15 14 19 19 C 1.54285 * 104.73254 * 89.01288 * 18 16 15 20 20 C 1.54552 * 104.94149 * 0.07735 * 19 18 16 21 21 H 1.08996 * 112.18154 * 146.35531 * 20 19 18 22 22 C 1.47160 * 120.71057 * 0.02562 * 14 12 11 23 23 N 1.48307 * 107.20399 * 58.36766 * 16 15 14 24 24 C 1.36941 * 128.07926 * 106.67897 * 23 16 15 25 25 H 1.08004 * 119.99698 * 14.97188 * 24 23 16 26 26 C 1.38805 * 120.00589 * 194.96806 * 24 23 16 27 27 N 1.31621 * 119.99701 * 9.27263 * 26 24 23 28 28 Si 1.86801 * 120.00606 * 189.27167 * 26 24 23 29 29 H 1.48504 * 109.47007 * 90.00018 * 28 26 24 30 30 H 1.48500 * 109.47203 * 209.99955 * 28 26 24 31 31 H 1.48499 * 109.46717 * 330.00315 * 28 26 24 32 32 H 1.08991 * 109.47529 * 59.99107 * 1 2 3 33 33 H 1.08999 * 109.47115 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46509 * 299.99518 * 1 2 3 35 35 H 1.09000 * 109.48036 * 302.31225 * 5 3 2 36 36 H 1.08997 * 109.48361 * 182.27482 * 5 3 2 37 37 H 1.08999 * 109.48371 * 178.85374 * 7 6 5 38 38 H 1.09002 * 109.48439 * 58.82000 * 7 6 5 39 39 H 1.08993 * 109.51827 * 297.70702 * 8 7 6 40 40 H 1.08995 * 109.52355 * 177.51215 * 8 7 6 41 41 H 1.08997 * 109.46676 * 55.44962 * 11 9 3 42 42 H 1.08994 * 109.47474 * 295.44582 * 11 9 3 43 43 H 1.09000 * 109.74938 * 13.12321 * 15 14 12 44 44 H 1.08997 * 109.75426 * 252.39079 * 15 14 12 45 45 H 1.08999 * 110.40133 * 330.22307 * 18 16 15 46 46 H 1.09005 * 110.44497 * 207.82689 * 18 16 15 47 47 H 1.09002 * 110.36522 * 241.18248 * 19 18 16 48 48 H 1.08993 * 110.36401 * 118.97332 * 19 18 16 49 49 H 1.08996 * 109.74994 * 107.61324 * 22 14 12 50 50 H 1.08997 * 109.74873 * 346.87672 * 22 14 12 51 51 H 0.97000 * 120.00467 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0014 -0.5110 5 6 2.2257 1.7695 1.4429 6 8 3.1435 0.8880 2.0933 7 6 4.4381 0.8450 1.4900 8 6 4.3116 0.3438 0.0489 9 6 3.3606 1.2646 -0.7220 10 1 3.7821 2.2688 -0.7670 11 6 3.1662 0.7269 -2.1411 12 6 4.4743 0.7920 -2.8866 13 8 5.4644 1.2262 -2.3370 14 7 4.5435 0.3688 -4.1643 15 6 5.8127 0.4258 -4.9071 16 6 6.0180 -0.9308 -5.6040 17 1 6.9606 -0.9729 -6.1496 18 6 5.9011 -2.0394 -4.5301 19 6 4.4000 -2.3941 -4.4940 20 6 3.7471 -1.4715 -5.5481 21 1 2.9046 -1.9493 -6.0479 22 6 3.3515 -0.1593 -4.8467 23 7 4.8482 -1.1509 -6.4886 24 6 4.7965 -1.0755 -7.8550 25 1 5.7104 -1.0710 -8.4305 26 6 3.5696 -1.0049 -8.5004 27 7 2.4682 -0.8266 -7.8023 28 14 3.4817 -1.1628 -10.3596 29 1 3.3130 -2.5916 -10.7276 30 1 2.3266 -0.3808 -10.8688 31 1 4.7358 -0.6417 -10.9605 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3632 0.5138 0.8901 35 1 1.2738 1.7595 1.9739 36 1 2.6315 2.7811 1.4427 37 1 5.0802 0.1691 2.0549 38 1 4.8728 1.8446 1.4903 39 1 3.9147 -0.6713 0.0499 40 1 5.2921 0.3522 -0.4270 41 1 2.4220 1.3313 -2.6597 42 1 2.8258 -0.3074 -2.0944 43 1 6.6353 0.6135 -4.2171 44 1 5.7679 1.2198 -5.6525 45 1 6.2255 -1.6640 -3.5596 46 1 6.4899 -2.9108 -4.8168 47 1 3.9864 -2.1930 -3.5058 48 1 4.2509 -3.4402 -4.7612 49 1 2.9998 0.5618 -5.5846 50 1 2.5654 -0.3539 -4.1172 51 1 1.6108 -0.7768 -8.2532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029334575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:08 Heat of formation + Delta-G solvation = -91.565999 kcal Electronic energy + Delta-G solvation = -32129.613171 eV Core-core repulsion = 28029.991792 eV Total energy + Delta-G solvation = -4099.621380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.41397 -39.60417 -37.80716 -37.03773 -34.11642 -33.69404 -32.45499 -30.73386 -30.56563 -29.27252 -28.81694 -26.68902 -26.09482 -24.21028 -23.67747 -23.42593 -22.93624 -20.17607 -19.74785 -19.44853 -18.46418 -17.18310 -16.71481 -16.49014 -16.08962 -15.83096 -15.54394 -15.30169 -15.24792 -14.77748 -14.52045 -14.17050 -13.95113 -13.72518 -13.43086 -13.04121 -12.91117 -12.73973 -12.60744 -12.39544 -12.18955 -11.85530 -11.76940 -11.61813 -11.43985 -11.38910 -11.15071 -10.94267 -10.90011 -10.80910 -10.67714 -10.36108 -10.33799 -10.09784 -10.07075 -9.84703 -9.63137 -9.56754 -9.34587 -9.06978 -8.78023 -8.03689 -6.86954 -5.88802 -3.22979 3.14092 3.33150 3.39467 3.40166 3.55124 3.62062 3.93834 4.38826 4.55455 4.64775 4.78678 4.88888 5.11685 5.11832 5.19756 5.22040 5.29229 5.30623 5.31643 5.38774 5.47566 5.54604 5.58927 5.64189 5.69115 5.72710 5.78892 5.81472 5.94472 5.95204 6.02579 6.05980 6.14069 6.24746 6.31745 6.40112 6.45224 6.54789 6.62088 6.65047 6.73282 6.88673 6.97244 6.99171 7.24011 7.25325 7.45218 7.63290 8.08596 8.13526 8.72804 9.02223 9.64124 10.41122 11.24623 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.003217 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.849983 B = 8701.159641 C = 9448.583306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.057 3.943 4 H 0.069 0.931 5 C 0.043 3.957 6 O -0.376 6.376 7 C 0.062 3.938 8 C -0.150 4.150 9 C -0.065 4.065 10 H 0.087 0.913 11 C -0.129 4.129 12 C 0.508 3.492 13 O -0.566 6.566 14 N -0.591 5.591 15 C 0.102 3.898 16 C 0.134 3.866 17 H 0.077 0.923 18 C -0.123 4.123 19 C -0.135 4.135 20 C 0.168 3.832 21 H 0.119 0.881 22 C 0.103 3.897 23 N -0.585 5.585 24 C -0.224 4.224 25 H 0.077 0.923 26 C -0.004 4.004 27 N -0.916 5.916 28 Si 0.912 3.088 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.081 0.919 50 H 0.061 0.939 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 3.248 15.434 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.285 6.285 3 C -0.002 4.002 4 H 0.087 0.913 5 C -0.034 4.034 6 O -0.295 6.295 7 C -0.015 4.015 8 C -0.187 4.187 9 C -0.084 4.084 10 H 0.105 0.895 11 C -0.169 4.169 12 C 0.297 3.703 13 O -0.447 6.447 14 N -0.322 5.322 15 C -0.022 4.022 16 C 0.025 3.975 17 H 0.095 0.905 18 C -0.162 4.162 19 C -0.174 4.174 20 C 0.060 3.940 21 H 0.137 0.863 22 C -0.020 4.020 23 N -0.306 5.306 24 C -0.352 4.352 25 H 0.094 0.906 26 C -0.200 4.200 27 N -0.563 5.563 28 Si 0.743 3.257 29 H -0.216 1.216 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.099 0.901 50 H 0.079 0.921 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.050 3.211 15.599 16.057 hybrid contribution -0.473 0.409 -1.352 1.490 sum -2.524 3.620 14.247 14.914 Atomic orbital electron populations 1.22804 0.81521 1.02853 0.99607 1.88000 1.19047 1.26565 1.94876 1.22877 0.95434 0.85847 0.95996 0.91314 1.23011 0.94141 0.93030 0.93229 1.87922 1.22458 1.65367 1.53704 1.22613 0.84354 1.00500 0.93986 1.22273 1.01650 0.99751 0.95040 1.21025 0.93314 1.00784 0.93306 0.89475 1.21609 0.96223 1.04199 0.94824 1.20518 0.90383 0.77648 0.81766 1.90570 1.38068 1.48357 1.67732 1.48233 1.11767 1.60731 1.11468 1.22321 0.85481 0.99634 0.94782 1.22026 0.92894 0.91702 0.90872 0.90521 1.22497 0.96895 0.98496 0.98293 1.22636 0.95878 0.99917 0.99018 1.21883 0.93622 0.90771 0.87693 0.86332 1.22610 0.84763 0.99247 0.95428 1.45176 1.04578 1.79667 1.01210 1.19031 0.92902 1.43662 0.79563 0.90568 1.24803 0.95708 1.01505 0.98021 1.69818 0.97579 1.54894 1.33981 0.86117 0.77132 0.77598 0.84875 1.21581 1.21744 1.20679 0.93996 0.89591 0.94444 0.89108 0.92467 0.89047 0.93438 0.90884 0.88716 0.89586 0.88262 0.90782 0.92196 0.92686 0.92785 0.93133 0.92810 0.90050 0.92080 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.37 -4.44 9.06 -42.73 -0.39 -4.82 16 3 C 0.06 0.62 2.43 -26.59 -0.06 0.56 16 4 H 0.07 0.64 7.79 -51.93 -0.40 0.23 16 5 C 0.04 0.44 6.49 37.20 0.24 0.69 16 6 O -0.38 -4.79 10.69 -42.73 -0.46 -5.24 16 7 C 0.06 0.73 6.84 37.21 0.25 0.98 16 8 C -0.15 -1.99 4.97 -26.59 -0.13 -2.12 16 9 C -0.07 -0.83 1.76 -90.43 -0.16 -0.99 16 10 H 0.09 1.13 7.96 -51.93 -0.41 0.72 16 11 C -0.13 -1.81 3.32 -27.88 -0.09 -1.90 16 12 C 0.51 8.81 7.44 -10.98 -0.08 8.73 16 13 O -0.57 -10.84 13.44 5.56 0.07 -10.77 16 14 N -0.59 -10.99 2.25 -171.49 -0.39 -11.37 16 15 C 0.10 1.98 5.91 -3.22 -0.02 1.96 16 16 C 0.13 2.66 4.32 -65.53 -0.28 2.37 16 17 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 18 C -0.12 -2.22 6.20 -25.12 -0.16 -2.38 16 19 C -0.14 -2.52 6.18 -25.24 -0.16 -2.67 16 20 C 0.17 3.61 3.12 -65.62 -0.20 3.40 16 21 H 0.12 2.89 6.36 -51.93 -0.33 2.56 16 22 C 0.10 2.02 5.71 -3.18 -0.02 2.00 16 23 N -0.59 -13.67 2.81 -152.41 -0.43 -14.10 16 24 C -0.22 -5.77 10.37 -15.06 -0.16 -5.93 16 25 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 26 C 0.00 -0.09 5.42 -17.43 -0.09 -0.19 16 27 N -0.92 -24.22 10.42 55.49 0.58 -23.64 16 28 Si 0.91 20.89 29.56 -169.99 -5.03 15.86 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 30 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 31 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 32 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.29 7.86 -51.93 -0.41 -0.12 16 35 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 1.04 7.83 -51.93 -0.41 0.64 16 40 H 0.09 1.43 6.03 -51.93 -0.31 1.11 16 41 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 42 H 0.10 1.42 7.22 -51.93 -0.37 1.05 16 43 H 0.07 1.38 7.11 -51.93 -0.37 1.01 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.05 0.97 7.85 -51.93 -0.41 0.56 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 0.88 7.84 -51.93 -0.41 0.47 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.08 1.84 7.84 -51.93 -0.41 1.44 16 50 H 0.06 1.04 6.09 -51.93 -0.32 0.73 16 51 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -28.86 383.92 -9.01 -37.87 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.73 Total: 4.56 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.03 Total: 5.87 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.24 Total: -49.11 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.77 Total: -20.83 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.86 -9.01 -37.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029334575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.698 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds