Wall clock time and date at job start Tue Mar 31 2020 21:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00016 * 2 1 4 4 H 1.08997 * 109.46679 * 30.00526 * 3 2 1 5 5 C 1.50696 * 109.47422 * 270.00485 * 3 2 1 6 6 O 1.21281 * 120.00129 * 354.99819 * 5 3 2 7 7 N 1.34775 * 119.99890 * 175.27731 * 5 3 2 8 8 C 1.46883 * 120.46844 * 359.44255 * 7 5 3 9 9 C 1.52857 * 109.02104 * 235.48963 * 8 7 5 10 10 C 1.52669 * 109.17468 * 307.81925 * 9 8 7 11 11 C 1.53488 * 113.62132 * 188.99240 * 10 9 8 12 12 N 1.47673 * 85.98679 * 137.70560 * 11 10 9 13 13 C 1.36938 * 134.45601 * 155.71017 * 12 11 10 14 14 H 1.08002 * 119.99423 * 187.03343 * 13 12 11 15 15 C 1.38808 * 120.00114 * 7.04426 * 13 12 11 16 16 N 1.31622 * 119.99930 * 7.58006 * 15 13 12 17 17 Si 1.86796 * 120.00063 * 187.58710 * 15 13 12 18 18 H 1.48495 * 109.47641 * 94.80750 * 17 15 13 19 19 H 1.48501 * 109.47048 * 214.81017 * 17 15 13 20 20 H 1.48501 * 109.47103 * 334.80854 * 17 15 13 21 21 C 1.47667 * 91.08381 * 335.68476 * 12 11 10 22 22 C 1.52675 * 113.18611 * 57.46152 * 10 9 8 23 23 C 1.46884 * 120.46581 * 179.72442 * 7 5 3 24 24 C 1.53001 * 109.46822 * 150.00143 * 3 2 1 25 25 H 1.09002 * 110.45484 * 177.39869 * 24 3 2 26 26 C 1.54509 * 110.51218 * 300.00109 * 24 3 2 27 27 C 1.54479 * 104.05983 * 118.64848 * 26 24 3 28 28 O 1.44427 * 104.80489 * 23.97662 * 27 26 24 29 29 C 1.44424 * 105.27778 * 319.48939 * 28 27 26 30 30 H 1.08999 * 109.47281 * 59.99444 * 1 2 3 31 31 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46768 * 299.99741 * 1 2 3 33 33 H 1.09003 * 109.58334 * 355.31755 * 8 7 5 34 34 H 1.08999 * 109.58918 * 115.74776 * 8 7 5 35 35 H 1.08995 * 109.61010 * 187.84208 * 9 8 7 36 36 H 1.09001 * 109.38777 * 67.66003 * 9 8 7 37 37 H 1.08997 * 113.79114 * 251.97135 * 11 10 9 38 38 H 1.08991 * 113.78985 * 23.44330 * 11 10 9 39 39 H 0.97000 * 120.00222 * 180.02562 * 16 15 13 40 40 H 1.09000 * 113.78946 * 270.04313 * 21 12 11 41 41 H 1.09003 * 113.79171 * 138.58196 * 21 12 11 42 42 H 1.09005 * 109.52623 * 182.51560 * 22 10 9 43 43 H 1.09004 * 109.53300 * 62.29677 * 22 10 9 44 44 H 1.08998 * 109.59313 * 244.25492 * 23 7 5 45 45 H 1.09000 * 109.58762 * 4.53897 * 23 7 5 46 46 H 1.09004 * 110.51295 * 237.29235 * 26 24 3 47 47 H 1.08995 * 110.51116 * 359.86607 * 26 24 3 48 48 H 1.09002 * 110.37127 * 142.80915 * 27 26 24 49 49 H 1.08999 * 110.37288 * 265.14329 * 27 26 24 50 50 H 1.09000 * 110.37111 * 281.68648 * 29 28 27 51 51 H 1.08991 * 110.37453 * 159.33852 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7645 -1.4207 6 8 1.9791 1.0108 -2.3413 7 7 2.6641 3.0107 -1.6682 8 6 2.9467 3.9340 -0.5614 9 6 2.1447 5.2189 -0.7674 10 6 2.4069 5.7538 -2.1730 11 6 1.8271 7.1540 -2.4163 12 7 3.0991 7.4475 -3.1066 13 6 3.4825 8.3390 -4.0727 14 1 4.4726 8.2795 -4.5001 15 6 2.5987 9.3193 -4.5026 16 7 1.4506 9.4884 -3.8816 17 14 3.0387 10.3984 -5.9624 18 1 2.4523 9.8219 -7.1989 19 1 2.4982 11.7649 -5.7486 20 1 4.5158 10.4664 -6.1003 21 6 3.7920 6.3947 -2.3372 22 6 2.0643 4.7505 -3.2716 23 6 2.8726 3.4667 -3.0488 24 6 3.3589 1.2632 0.7212 25 1 3.8381 2.2417 0.6907 26 6 3.1771 0.7949 2.1824 27 6 4.0046 -0.5069 2.2650 28 8 4.9849 -0.3886 1.2110 29 6 4.2748 0.1889 0.0939 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.6577 3.4720 0.3826 34 1 4.0108 4.1696 -0.5447 35 1 2.4501 5.9627 -0.0315 36 1 1.0822 5.0047 -0.6513 37 1 0.9579 7.1618 -3.0740 38 1 1.6780 7.7326 -1.5048 39 1 0.8328 10.1731 -4.1822 40 1 4.2269 6.7477 -1.4021 41 1 4.4845 5.7990 -2.9319 42 1 2.3150 5.1750 -4.2438 43 1 0.9992 4.5213 -3.2366 44 1 3.9313 3.6687 -3.2111 45 1 2.5371 2.6960 -3.7428 46 1 3.5685 1.5408 2.8741 47 1 2.1261 0.5958 2.3916 48 1 4.4970 -0.5827 3.2345 49 1 3.3663 -1.3738 2.0939 50 1 3.6779 -0.5712 -0.4101 51 1 4.9747 0.6478 -0.6044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035759597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:23 Heat of formation + Delta-G solvation = -61.112927 kcal Electronic energy + Delta-G solvation = -31557.663664 eV Core-core repulsion = 27459.362828 eV Total energy + Delta-G solvation = -4098.300835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.02479 -39.62902 -38.70070 -37.41946 -35.82097 -33.41258 -32.44915 -31.17690 -30.60706 -29.74838 -27.49327 -26.91790 -26.08086 -25.07278 -23.84745 -23.21802 -22.83361 -21.45018 -20.72960 -19.83275 -18.00898 -17.23857 -16.98300 -16.73909 -16.48784 -16.30980 -15.75288 -15.17952 -15.02365 -14.83814 -14.77023 -14.68198 -14.37461 -13.88736 -13.80631 -13.66737 -13.28931 -13.15694 -12.79376 -12.49481 -12.39534 -12.14393 -12.04893 -11.85567 -11.76554 -11.54576 -11.22212 -11.12663 -11.06966 -10.95244 -10.91731 -10.87164 -10.69665 -10.37464 -10.21112 -9.96529 -9.77568 -9.63720 -9.41007 -9.29403 -8.76773 -8.51278 -6.88507 -5.80249 -3.10377 2.48216 2.82757 3.37522 3.41352 3.42916 3.44636 3.75702 4.05511 4.30105 4.44121 4.47534 4.57152 4.73256 4.74438 4.89671 4.95143 5.06043 5.07293 5.10990 5.17151 5.21404 5.24996 5.27416 5.42541 5.44468 5.45100 5.46015 5.49253 5.62684 5.64989 5.66798 5.78480 5.79524 5.84742 5.90215 6.09771 6.21101 6.24720 6.37328 6.54943 6.55690 6.59382 6.69231 6.74354 6.82621 7.17834 7.32008 7.38415 7.52832 7.96337 8.11418 9.03024 9.69401 10.60129 11.38001 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.002638 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.208154 B =10612.355496 C =10910.466029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.082 3.918 4 H 0.090 0.910 5 C 0.490 3.510 6 O -0.530 6.530 7 N -0.601 5.601 8 C 0.102 3.898 9 C -0.119 4.119 10 C -0.110 4.110 11 C 0.181 3.819 12 N -0.607 5.607 13 C -0.223 4.223 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.920 5.920 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.126 3.874 22 C -0.096 4.096 23 C 0.113 3.887 24 C -0.124 4.124 25 H 0.108 0.892 26 C -0.144 4.144 27 C 0.048 3.952 28 O -0.376 6.376 29 C 0.054 3.946 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.253 0.747 40 H 0.031 0.969 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.062 0.938 50 H 0.076 0.924 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 -18.229 14.187 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.020 3.980 4 H 0.108 0.892 5 C 0.277 3.723 6 O -0.406 6.406 7 N -0.336 5.336 8 C -0.021 4.021 9 C -0.158 4.158 10 C -0.111 4.111 11 C 0.055 3.945 12 N -0.333 5.333 13 C -0.351 4.351 14 H 0.096 0.904 15 C -0.204 4.204 16 N -0.567 5.567 17 Si 0.740 3.260 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.000 4.000 22 C -0.134 4.134 23 C -0.009 4.009 24 C -0.143 4.143 25 H 0.126 0.874 26 C -0.182 4.182 27 C -0.029 4.029 28 O -0.294 6.294 29 C -0.023 4.023 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.094 0.906 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.082 -18.598 13.473 22.965 hybrid contribution -0.336 1.353 -0.693 1.557 sum -0.254 -17.245 12.780 21.466 Atomic orbital electron populations 1.22878 0.80417 1.03240 1.00204 1.87952 1.20136 1.24682 1.94432 1.21960 0.96225 0.86928 0.92883 0.89246 1.21180 0.77534 0.81761 0.91833 1.90698 1.50571 1.53431 1.45910 1.48167 1.65023 1.12283 1.08119 1.21901 1.00730 0.90698 0.88769 1.21758 0.99902 0.95874 0.98267 1.22393 0.99451 0.96506 0.92774 1.22087 0.91200 0.86639 0.94558 1.46048 1.06190 1.40049 1.41049 1.19026 0.99142 1.06639 1.10297 0.90362 1.24791 0.97306 0.98399 0.99864 1.69839 1.09949 1.35686 1.41228 0.86148 0.77631 0.79816 0.82449 1.21593 1.21776 1.20616 1.22594 0.93235 0.89946 0.94265 1.21490 0.99162 0.93040 0.99741 1.21710 1.00376 0.96997 0.81836 1.22899 0.93766 1.02255 0.95395 0.87381 1.22930 1.01783 0.98278 0.95212 1.23363 0.90729 0.96926 0.91833 1.89115 1.33166 1.83649 1.23510 1.23413 0.94486 0.94753 0.89629 0.93467 0.89167 0.93934 0.90193 0.90721 0.90418 0.91855 0.92385 0.95198 0.93696 0.95190 0.94117 0.89458 0.92227 0.91276 0.89370 0.90263 0.90043 0.89292 0.91987 0.90564 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.81 101.05 1.09 1.34 16 2 O -0.36 -3.87 8.30 -55.09 -0.46 -4.33 16 3 C 0.08 0.82 1.27 -27.88 -0.04 0.78 16 4 H 0.09 0.73 7.09 -51.93 -0.37 0.36 16 5 C 0.49 6.45 6.58 -10.99 -0.07 6.38 16 6 O -0.53 -8.95 15.90 -14.30 -0.23 -9.18 16 7 N -0.60 -7.49 2.95 -172.96 -0.51 -8.00 16 8 C 0.10 1.05 4.83 -3.91 -0.02 1.03 16 9 C -0.12 -1.50 5.24 -26.97 -0.14 -1.64 16 10 C -0.11 -1.84 0.77 -154.42 -0.12 -1.96 16 11 C 0.18 4.01 6.43 -3.16 -0.02 3.99 16 12 N -0.61 -14.89 3.52 -179.76 -0.63 -15.52 16 13 C -0.22 -6.13 10.68 -15.06 -0.16 -6.29 16 14 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 15 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 16 N -0.92 -26.98 11.77 55.49 0.65 -26.33 16 17 Si 0.91 21.98 29.56 -169.99 -5.02 16.96 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.13 2.38 7.72 -3.15 -0.02 2.35 16 22 C -0.10 -1.55 5.22 -26.73 -0.14 -1.69 16 23 C 0.11 1.59 6.30 -3.66 -0.02 1.56 16 24 C -0.12 -1.10 2.52 -89.05 -0.22 -1.32 16 25 H 0.11 0.86 5.49 -51.93 -0.29 0.57 16 26 C -0.14 -1.03 6.51 -25.16 -0.16 -1.19 16 27 C 0.05 0.40 7.63 37.93 0.29 0.69 16 28 O -0.38 -4.30 11.65 -35.23 -0.41 -4.71 16 29 C 0.05 0.59 6.59 37.93 0.25 0.84 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 33 H 0.08 0.62 4.61 -51.93 -0.24 0.38 16 34 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.44 7.66 -51.93 -0.40 1.04 16 38 H 0.03 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 41 H 0.04 0.74 7.41 -51.93 -0.38 0.36 16 42 H 0.09 1.62 8.01 -51.93 -0.42 1.21 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.95 7.49 -51.93 -0.39 0.56 16 45 H 0.09 1.32 6.97 -51.93 -0.36 0.96 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.52 7.52 -51.93 -0.39 0.13 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.08 0.95 7.06 -51.93 -0.37 0.59 16 51 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -33.36 390.62 -8.96 -42.32 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.63 Total: -1.67 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 0.39 Total: 4.59 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.49 Total: -49.85 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -1.10 Total: -18.22 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.36 -8.96 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035759597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.797 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds