Wall clock time and date at job start Tue Mar 31 2020 21:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00016 * 2 1 4 4 H 1.08997 * 109.46679 * 30.00526 * 3 2 1 5 5 C 1.50696 * 109.47422 * 270.00485 * 3 2 1 6 6 O 1.21281 * 120.00129 * 354.99819 * 5 3 2 7 7 N 1.34775 * 119.99890 * 175.27731 * 5 3 2 8 8 C 1.46883 * 120.46844 * 359.44255 * 7 5 3 9 9 C 1.52857 * 109.02104 * 235.48963 * 8 7 5 10 10 C 1.52669 * 109.17468 * 307.81925 * 9 8 7 11 11 C 1.53488 * 113.62132 * 188.99240 * 10 9 8 12 12 N 1.47673 * 85.98679 * 137.70560 * 11 10 9 13 13 C 1.36938 * 134.45601 * 155.71017 * 12 11 10 14 14 H 1.08002 * 119.99423 * 187.03343 * 13 12 11 15 15 C 1.38808 * 120.00114 * 7.04426 * 13 12 11 16 16 N 1.31622 * 119.99930 * 7.58006 * 15 13 12 17 17 Si 1.86796 * 120.00063 * 187.58710 * 15 13 12 18 18 H 1.48495 * 109.47641 * 94.80750 * 17 15 13 19 19 H 1.48501 * 109.47048 * 214.81017 * 17 15 13 20 20 H 1.48501 * 109.47103 * 334.80854 * 17 15 13 21 21 C 1.47667 * 91.08381 * 335.68476 * 12 11 10 22 22 C 1.52675 * 113.18611 * 57.46152 * 10 9 8 23 23 C 1.46884 * 120.46581 * 179.72442 * 7 5 3 24 24 C 1.53001 * 109.46822 * 150.00143 * 3 2 1 25 25 H 1.09002 * 110.45484 * 177.39869 * 24 3 2 26 26 C 1.54509 * 110.51218 * 300.00109 * 24 3 2 27 27 C 1.54479 * 104.05983 * 118.64848 * 26 24 3 28 28 O 1.44427 * 104.80489 * 23.97662 * 27 26 24 29 29 C 1.44424 * 105.27778 * 319.48939 * 28 27 26 30 30 H 1.08999 * 109.47281 * 59.99444 * 1 2 3 31 31 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46768 * 299.99741 * 1 2 3 33 33 H 1.09003 * 109.58334 * 355.31755 * 8 7 5 34 34 H 1.08999 * 109.58918 * 115.74776 * 8 7 5 35 35 H 1.08995 * 109.61010 * 187.84208 * 9 8 7 36 36 H 1.09001 * 109.38777 * 67.66003 * 9 8 7 37 37 H 1.08997 * 113.79114 * 251.97135 * 11 10 9 38 38 H 1.08991 * 113.78985 * 23.44330 * 11 10 9 39 39 H 0.97000 * 120.00222 * 180.02562 * 16 15 13 40 40 H 1.09000 * 113.78946 * 270.04313 * 21 12 11 41 41 H 1.09003 * 113.79171 * 138.58196 * 21 12 11 42 42 H 1.09005 * 109.52623 * 182.51560 * 22 10 9 43 43 H 1.09004 * 109.53300 * 62.29677 * 22 10 9 44 44 H 1.08998 * 109.59313 * 244.25492 * 23 7 5 45 45 H 1.09000 * 109.58762 * 4.53897 * 23 7 5 46 46 H 1.09004 * 110.51295 * 237.29235 * 26 24 3 47 47 H 1.08995 * 110.51116 * 359.86607 * 26 24 3 48 48 H 1.09002 * 110.37127 * 142.80915 * 27 26 24 49 49 H 1.08999 * 110.37288 * 265.14329 * 27 26 24 50 50 H 1.09000 * 110.37111 * 281.68648 * 29 28 27 51 51 H 1.08991 * 110.37453 * 159.33852 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7645 -1.4207 6 8 1.9791 1.0108 -2.3413 7 7 2.6641 3.0107 -1.6682 8 6 2.9467 3.9340 -0.5614 9 6 2.1447 5.2189 -0.7674 10 6 2.4069 5.7538 -2.1730 11 6 1.8271 7.1540 -2.4163 12 7 3.0991 7.4475 -3.1066 13 6 3.4825 8.3390 -4.0727 14 1 4.4726 8.2795 -4.5001 15 6 2.5987 9.3193 -4.5026 16 7 1.4506 9.4884 -3.8816 17 14 3.0387 10.3984 -5.9624 18 1 2.4523 9.8219 -7.1989 19 1 2.4982 11.7649 -5.7486 20 1 4.5158 10.4664 -6.1003 21 6 3.7920 6.3947 -2.3372 22 6 2.0643 4.7505 -3.2716 23 6 2.8726 3.4667 -3.0488 24 6 3.3589 1.2632 0.7212 25 1 3.8381 2.2417 0.6907 26 6 3.1771 0.7949 2.1824 27 6 4.0046 -0.5069 2.2650 28 8 4.9849 -0.3886 1.2110 29 6 4.2748 0.1889 0.0939 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.6577 3.4720 0.3826 34 1 4.0108 4.1696 -0.5447 35 1 2.4501 5.9627 -0.0315 36 1 1.0822 5.0047 -0.6513 37 1 0.9579 7.1618 -3.0740 38 1 1.6780 7.7326 -1.5048 39 1 0.8328 10.1731 -4.1822 40 1 4.2269 6.7477 -1.4021 41 1 4.4845 5.7990 -2.9319 42 1 2.3150 5.1750 -4.2438 43 1 0.9992 4.5213 -3.2366 44 1 3.9313 3.6687 -3.2111 45 1 2.5371 2.6960 -3.7428 46 1 3.5685 1.5408 2.8741 47 1 2.1261 0.5958 2.3916 48 1 4.4970 -0.5827 3.2345 49 1 3.3663 -1.3738 2.0939 50 1 3.6779 -0.5712 -0.4101 51 1 4.9747 0.6478 -0.6044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035759597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:22 Heat of formation + Delta-G solvation = -82.868110 kcal Electronic energy + Delta-G solvation = -31558.607039 eV Core-core repulsion = 27459.362828 eV Total energy + Delta-G solvation = -4099.244211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.99750 -40.78011 -39.74021 -38.29995 -37.06590 -34.58080 -33.97786 -32.22075 -32.03264 -30.52424 -28.78475 -28.03442 -27.04415 -26.66325 -25.13383 -24.24295 -23.77737 -22.89737 -21.52236 -20.91114 -19.13361 -18.68176 -18.17653 -17.92149 -17.30871 -17.04680 -16.92156 -16.68614 -16.14622 -15.97335 -15.83295 -15.60984 -15.55946 -15.28029 -15.12106 -14.46478 -14.33638 -14.19448 -13.99344 -13.72454 -13.66504 -13.36911 -13.16149 -12.92653 -12.80835 -12.72212 -12.68249 -12.50661 -12.21318 -12.18151 -12.08830 -11.86120 -11.70174 -11.60082 -11.54676 -11.51361 -11.09521 -10.98776 -10.78215 -10.70817 -10.25460 -9.62603 -8.87336 -7.91720 -5.21363 1.43723 1.45140 1.50465 1.53597 1.87677 2.47645 2.68633 3.05814 3.29052 3.31877 3.41896 3.56743 3.61074 3.77880 3.88878 3.92666 3.99402 4.08847 4.16143 4.24715 4.31638 4.37618 4.45129 4.49384 4.50810 4.55595 4.61297 4.68811 4.75958 4.76517 4.78807 4.84710 4.90491 4.92334 4.93887 4.96763 5.05174 5.12675 5.13872 5.17697 5.21753 5.26286 5.34210 5.49479 5.58867 5.75663 5.85428 5.95816 5.98892 6.41259 6.94049 7.11760 7.63043 8.60998 9.26548 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.002638 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.208154 B =10612.355496 C =10910.466029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.372 6.372 3 C 0.086 3.914 4 H 0.120 0.880 5 C 0.487 3.513 6 O -0.575 6.575 7 N -0.599 5.599 8 C 0.103 3.897 9 C -0.113 4.113 10 C -0.082 4.082 11 C 0.176 3.824 12 N -0.639 5.639 13 C -0.229 4.229 14 H 0.080 0.920 15 C -0.067 4.067 16 N -0.954 5.954 17 Si 0.972 3.028 18 H -0.290 1.290 19 H -0.296 1.296 20 H -0.267 1.267 21 C 0.128 3.872 22 C -0.089 4.089 23 C 0.123 3.877 24 C -0.119 4.119 25 H 0.125 0.875 26 C -0.136 4.136 27 C 0.039 3.961 28 O -0.398 6.398 29 C 0.053 3.947 30 H 0.027 0.973 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.247 0.753 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.057 0.943 50 H 0.052 0.948 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 -18.960 16.913 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.289 6.289 3 C 0.025 3.975 4 H 0.138 0.862 5 C 0.276 3.724 6 O -0.454 6.454 7 N -0.333 5.333 8 C -0.019 4.019 9 C -0.152 4.152 10 C -0.083 4.083 11 C 0.051 3.949 12 N -0.365 5.365 13 C -0.358 4.358 14 H 0.098 0.902 15 C -0.260 4.260 16 N -0.603 5.603 17 Si 0.801 3.199 18 H -0.218 1.218 19 H -0.222 1.222 20 H -0.192 1.192 21 C 0.004 3.996 22 C -0.127 4.127 23 C 0.000 4.000 24 C -0.138 4.138 25 H 0.143 0.857 26 C -0.174 4.174 27 C -0.037 4.037 28 O -0.317 6.317 29 C -0.024 4.024 30 H 0.046 0.954 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.120 0.880 47 H 0.112 0.888 48 H 0.125 0.875 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.955 -19.348 16.236 25.276 hybrid contribution -0.589 1.502 -1.548 2.236 sum 0.366 -17.847 14.688 23.116 Atomic orbital electron populations 1.23022 0.79411 1.04150 1.00566 1.87954 1.21344 1.25343 1.94284 1.22083 0.97504 0.87262 0.90667 0.86217 1.21895 0.76279 0.81282 0.92970 1.90681 1.52415 1.54679 1.47643 1.48221 1.64629 1.12652 1.07799 1.22119 1.01276 0.89114 0.89375 1.21734 1.01087 0.97327 0.95055 1.22094 0.96697 0.93746 0.95754 1.22042 0.89563 0.90325 0.93004 1.46431 1.08257 1.40292 1.41523 1.19404 0.99028 1.06541 1.10849 0.90177 1.25566 0.97536 1.00297 1.02639 1.70009 1.10974 1.36449 1.42852 0.85152 0.77921 0.77659 0.79195 1.21756 1.22231 1.19187 1.22787 0.94331 0.88277 0.94209 1.21355 0.99310 0.93941 0.98129 1.21443 1.00116 0.95208 0.83201 1.22933 0.92469 1.02241 0.96165 0.85730 1.22942 1.02416 0.97883 0.94118 1.23587 0.90650 0.97717 0.91738 1.89094 1.34456 1.83899 1.24277 1.23326 0.94482 0.94877 0.89745 0.95389 0.88229 0.91116 0.86397 0.89213 0.88934 0.91066 0.96259 0.96254 0.94440 0.93252 0.93178 0.92653 0.92643 0.90530 0.90625 0.87999 0.88841 0.87483 0.92469 0.92931 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.81 113.37 1.23 1.59 16 2 O -0.37 -7.33 8.30 -129.99 -1.08 -8.41 16 3 C 0.09 1.44 1.27 29.85 0.04 1.48 16 4 H 0.12 1.32 7.09 -2.39 -0.02 1.30 16 5 C 0.49 11.93 6.58 87.66 0.58 12.50 16 6 O -0.57 -19.36 15.90 15.95 0.25 -19.11 16 7 N -0.60 -13.47 2.95 -819.50 -2.42 -15.89 16 8 C 0.10 1.66 4.83 86.26 0.42 2.08 16 9 C -0.11 -2.47 5.24 30.44 0.16 -2.31 16 10 C -0.08 -2.64 0.77 -52.03 -0.04 -2.69 16 11 C 0.18 7.99 6.43 86.31 0.56 8.54 16 12 N -0.64 -31.60 3.52 -722.62 -2.54 -34.15 16 13 C -0.23 -12.77 10.68 84.03 0.90 -11.87 16 14 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 15 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 16 N -0.95 -57.77 11.77 21.65 0.25 -57.52 16 17 Si 0.97 46.06 29.56 68.60 2.03 48.09 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 C 0.13 4.66 7.72 86.32 0.67 5.33 16 22 C -0.09 -2.89 5.22 30.60 0.16 -2.73 16 23 C 0.12 3.37 6.30 86.42 0.54 3.91 16 24 C -0.12 -1.67 2.52 -9.78 -0.02 -1.69 16 25 H 0.12 1.33 5.49 -2.39 -0.01 1.32 16 26 C -0.14 -1.33 6.51 31.61 0.21 -1.13 16 27 C 0.04 0.54 7.63 72.48 0.55 1.10 16 28 O -0.40 -8.46 11.65 -148.98 -1.74 -10.19 16 29 C 0.05 1.07 6.59 72.49 0.48 1.55 16 30 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 33 H 0.12 1.11 4.61 -2.39 -0.01 1.10 16 34 H 0.09 1.30 8.07 -2.39 -0.02 1.28 16 35 H 0.09 1.84 8.12 -2.39 -0.02 1.82 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.02 1.00 7.66 -2.39 -0.02 0.98 16 38 H 0.02 0.92 8.09 -2.39 -0.02 0.90 16 39 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.05 1.66 8.07 -2.39 -0.02 1.64 16 41 H 0.05 1.73 7.41 -2.39 -0.02 1.71 16 42 H 0.05 2.14 8.01 -2.38 -0.02 2.12 16 43 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.08 1.99 7.49 -2.39 -0.02 1.97 16 45 H 0.08 2.29 6.97 -2.39 -0.02 2.28 16 46 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.09 0.73 7.52 -2.39 -0.02 0.72 16 48 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.05 1.31 7.06 -2.39 -0.02 1.29 16 51 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -76.70 390.62 2.55 -74.15 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.91 Total: 10.74 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.88 Total: 12.28 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -4.70 Total: -107.55 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -2.56 Total: -37.71 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -76.70 2.55 -74.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035759597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.721 kcal (2) G-P(sol) polarization free energy of solvation -76.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds