Wall clock time and date at job start Tue Mar 31 2020 21:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99929 * 2 1 4 4 H 1.08995 * 109.47338 * 12.32903 * 3 2 1 5 5 C 1.50705 * 109.46525 * 132.32682 * 3 2 1 6 6 O 1.21280 * 120.00316 * 9.86798 * 5 3 2 7 7 N 1.34777 * 119.99480 * 189.86539 * 5 3 2 8 8 C 1.46883 * 120.46864 * 4.98102 * 7 5 3 9 9 C 1.52858 * 109.01638 * 235.48099 * 8 7 5 10 10 C 1.52673 * 109.18192 * 307.82115 * 9 8 7 11 11 C 1.53481 * 113.62392 * 188.98985 * 10 9 8 12 12 N 1.47660 * 85.98670 * 137.70908 * 11 10 9 13 13 C 1.36936 * 134.45608 * 155.66442 * 12 11 10 14 14 H 1.08008 * 120.00046 * 180.02562 * 13 12 11 15 15 C 1.38809 * 120.00107 * 0.02562 * 13 12 11 16 16 N 1.31620 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00198 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47250 * 59.99402 * 17 15 13 19 19 H 1.48501 * 109.47281 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46831 * 299.99657 * 17 15 13 21 21 C 1.47668 * 91.08949 * 335.67815 * 12 11 10 22 22 C 1.52672 * 113.18481 * 57.45673 * 10 9 8 23 23 C 1.46885 * 120.46207 * 185.24966 * 7 5 3 24 24 C 1.52996 * 109.47422 * 252.32427 * 3 2 1 25 25 H 1.09000 * 110.83106 * 181.66145 * 24 3 2 26 26 C 1.54817 * 110.90614 * 58.01852 * 24 3 2 27 27 C 1.54099 * 104.18337 * 220.91942 * 26 24 3 28 28 O 1.43737 * 107.29775 * 357.97081 * 27 26 24 29 29 C 1.44376 * 106.97795 * 26.51075 * 28 27 26 30 30 H 1.08996 * 109.47245 * 176.80542 * 1 2 3 31 31 H 1.09002 * 109.46881 * 296.80653 * 1 2 3 32 32 H 1.09001 * 109.47397 * 56.80053 * 1 2 3 33 33 H 1.08997 * 109.58946 * 355.31106 * 8 7 5 34 34 H 1.09006 * 109.58606 * 115.74639 * 8 7 5 35 35 H 1.08994 * 109.61012 * 187.83909 * 9 8 7 36 36 H 1.09001 * 109.44299 * 67.69756 * 9 8 7 37 37 H 1.08999 * 113.78583 * 251.97768 * 11 10 9 38 38 H 1.08998 * 113.78689 * 23.43926 * 11 10 9 39 39 H 0.96995 * 120.00376 * 179.97438 * 16 15 13 40 40 H 1.08991 * 113.79355 * 270.05307 * 21 12 11 41 41 H 1.08997 * 113.89361 * 138.59117 * 21 12 11 42 42 H 1.08996 * 109.52970 * 182.52294 * 22 10 9 43 43 H 1.09000 * 109.59080 * 62.33908 * 22 10 9 44 44 H 1.08994 * 109.59474 * 244.25924 * 23 7 5 45 45 H 1.08999 * 109.59313 * 4.55222 * 23 7 5 46 46 H 1.09004 * 110.48312 * 339.59321 * 26 24 3 47 47 H 1.08991 * 110.48837 * 102.10940 * 26 24 3 48 48 H 1.09011 * 109.87674 * 117.39261 * 27 26 24 49 49 H 1.09002 * 109.87818 * 238.54222 * 27 26 24 50 50 H 1.08997 * 110.62257 * 201.43921 * 29 28 27 51 51 H 1.09002 * 110.61677 * 78.43986 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2409 2.0457 0.2194 5 6 3.0886 1.3751 1.0505 6 8 3.4594 0.3633 1.6070 7 7 3.6408 2.5619 1.3715 8 6 3.1259 3.8061 0.7848 9 6 4.2742 4.5457 0.0986 10 6 5.4331 4.6949 1.0812 11 6 6.5553 5.6111 0.5743 12 7 6.5835 6.1614 1.9442 13 6 7.5290 6.7986 2.7025 14 1 7.2934 7.1108 3.7093 15 6 8.7904 7.0432 2.1774 16 7 9.0778 6.6624 0.9507 17 14 10.0806 7.9119 3.2121 18 1 10.3500 7.1171 4.4371 19 1 11.3331 8.0517 2.4266 20 1 9.5840 9.2581 3.5947 21 6 5.1835 5.7489 2.1690 22 6 5.9333 3.3600 1.6278 23 6 4.7700 2.6286 2.3085 24 6 2.6178 1.5933 -1.3743 25 1 3.0937 2.5738 -1.3901 26 6 1.5465 1.4814 -2.4864 27 6 2.2731 0.7627 -3.6397 28 8 3.6311 0.5469 -3.2207 29 6 3.6223 0.4843 -1.7784 30 1 -0.3633 -1.0260 -0.0573 31 1 -0.3633 0.4635 0.9173 32 1 -0.3634 0.5627 -0.8599 33 1 2.3540 3.5723 0.0516 34 1 2.7079 4.4351 1.5708 35 1 3.9362 5.5322 -0.2187 36 1 4.6043 3.9767 -0.7705 37 1 7.4648 5.0792 0.2953 38 1 6.2308 6.3272 -0.1806 39 1 9.9591 6.8336 0.5836 40 1 4.4515 6.5059 1.8880 41 1 5.0010 5.3263 3.1570 42 1 6.7267 3.5377 2.3536 43 1 6.3177 2.7510 0.8095 44 1 4.4702 3.1729 3.2040 45 1 5.0793 1.6195 2.5807 46 1 0.6990 0.8890 -2.1413 47 1 1.2164 2.4719 -2.7992 48 1 1.7913 -0.1940 -3.8423 49 1 2.2557 1.3855 -4.5340 50 1 4.6133 0.6998 -1.3788 51 1 3.2742 -0.4912 -1.4386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035759600.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:34 Heat of formation + Delta-G solvation = -58.299034 kcal Electronic energy + Delta-G solvation = -31789.492765 eV Core-core repulsion = 27691.313949 eV Total energy + Delta-G solvation = -4098.178816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.98268 -39.62390 -38.64131 -37.53815 -35.79497 -33.18761 -32.43692 -31.18152 -30.60859 -29.90312 -27.64451 -26.92438 -26.01239 -25.03179 -23.72961 -23.18760 -22.63901 -21.32164 -21.05305 -19.71631 -17.83601 -17.36097 -17.02066 -16.73419 -16.69886 -16.21339 -15.64172 -15.13829 -14.93462 -14.86213 -14.81450 -14.70112 -14.30791 -13.92636 -13.79348 -13.62504 -13.35901 -13.15436 -12.73456 -12.47361 -12.37806 -12.21420 -11.98220 -11.83970 -11.72492 -11.67784 -11.32669 -11.11966 -11.05432 -10.89318 -10.85461 -10.82856 -10.40099 -10.33744 -10.15842 -9.79240 -9.71613 -9.66437 -9.41967 -9.33697 -8.78014 -8.48436 -6.85753 -5.75419 -3.07387 2.49828 2.72079 3.39717 3.44097 3.45303 3.56109 3.73118 4.03674 4.31158 4.46094 4.50621 4.54521 4.71804 4.77193 4.81562 4.96577 4.98555 5.05868 5.10752 5.12469 5.18389 5.26994 5.29409 5.30136 5.45266 5.47751 5.49290 5.50115 5.66274 5.67128 5.73163 5.80919 5.87408 5.89053 5.92582 6.14093 6.23789 6.28260 6.40077 6.57566 6.62150 6.68278 6.69337 6.78758 6.86897 7.23727 7.37028 7.40533 7.59130 8.00012 8.14701 9.06149 9.72421 10.62229 11.41359 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.002891 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.402698 B = 9683.259983 C =10275.105252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.353 6.353 3 C 0.083 3.917 4 H 0.090 0.910 5 C 0.508 3.492 6 O -0.524 6.524 7 N -0.602 5.602 8 C 0.104 3.896 9 C -0.120 4.120 10 C -0.108 4.108 11 C 0.174 3.826 12 N -0.608 5.608 13 C -0.223 4.223 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.126 3.874 22 C -0.096 4.096 23 C 0.114 3.886 24 C -0.138 4.138 25 H 0.107 0.893 26 C -0.154 4.154 27 C 0.050 3.950 28 O -0.376 6.376 29 C 0.058 3.942 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.254 0.746 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.357 -10.396 -6.413 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.270 6.270 3 C 0.021 3.979 4 H 0.108 0.892 5 C 0.294 3.706 6 O -0.399 6.399 7 N -0.337 5.337 8 C -0.019 4.019 9 C -0.159 4.159 10 C -0.109 4.109 11 C 0.048 3.952 12 N -0.334 5.334 13 C -0.351 4.351 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.568 5.568 17 Si 0.740 3.260 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.213 1.213 21 C 0.000 4.000 22 C -0.134 4.134 23 C -0.007 4.007 24 C -0.157 4.157 25 H 0.125 0.875 26 C -0.192 4.192 27 C -0.027 4.027 28 O -0.295 6.295 29 C -0.018 4.018 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.075 0.925 49 H 0.101 0.899 50 H 0.111 0.889 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.533 -11.005 -6.173 23.254 hybrid contribution 0.238 1.159 0.593 1.323 sum -19.295 -9.847 -5.580 22.369 Atomic orbital electron populations 1.23049 0.80834 1.03364 1.00091 1.88038 1.19496 1.24922 1.94589 1.21828 0.95455 0.87081 0.93540 0.89206 1.20458 0.83439 0.83443 0.83241 1.90705 1.62133 1.34192 1.52887 1.48097 1.34119 1.05842 1.45631 1.21806 0.96740 0.85483 0.97869 1.21782 0.95305 1.00306 0.98529 1.22380 0.96463 0.95225 0.96825 1.22227 0.94491 0.90948 0.87505 1.45932 1.06766 1.68891 1.11831 1.18955 0.90438 1.30494 0.95216 0.90496 1.24751 0.97521 1.01503 0.96543 1.69798 1.21182 1.51373 1.14407 0.86245 0.81122 0.79457 0.79194 1.21113 1.21593 1.21306 1.22583 0.88508 0.92904 0.95984 1.21494 0.96910 0.94264 1.00770 1.21721 0.85702 1.01996 0.91296 1.23268 0.97456 1.01956 0.93045 0.87513 1.23090 0.98798 1.02017 0.95269 1.23080 0.83036 0.99274 0.97273 1.88891 1.25944 1.93799 1.20865 1.23522 0.99627 0.98157 0.80496 0.89050 0.93737 0.93500 0.90540 0.90863 0.90523 0.91623 0.90955 0.95778 0.93633 0.95243 0.94184 0.89357 0.92055 0.91348 0.89334 0.90054 0.90117 0.92467 0.89900 0.88927 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.27 101.05 1.04 1.20 16 2 O -0.35 -3.90 8.50 -54.95 -0.47 -4.36 16 3 C 0.08 0.84 1.64 -27.88 -0.05 0.80 16 4 H 0.09 0.69 6.63 -51.93 -0.34 0.34 16 5 C 0.51 6.90 6.56 -10.98 -0.07 6.83 16 6 O -0.52 -9.17 15.94 -14.16 -0.23 -9.40 16 7 N -0.60 -7.67 2.95 -172.94 -0.51 -8.18 16 8 C 0.10 1.09 5.39 -3.91 -0.02 1.06 16 9 C -0.12 -1.53 5.10 -26.97 -0.14 -1.67 16 10 C -0.11 -1.82 0.77 -154.42 -0.12 -1.94 16 11 C 0.17 3.89 6.64 -3.17 -0.02 3.87 16 12 N -0.61 -14.96 3.53 -179.81 -0.64 -15.60 16 13 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 14 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 15 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 16 N -0.92 -27.00 11.39 55.49 0.63 -26.36 16 17 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.13 2.40 7.73 -3.15 -0.02 2.37 16 22 C -0.10 -1.59 5.22 -26.72 -0.14 -1.73 16 23 C 0.11 1.65 6.29 -3.65 -0.02 1.62 16 24 C -0.14 -1.33 2.59 -88.61 -0.23 -1.56 16 25 H 0.11 1.02 5.40 -51.93 -0.28 0.73 16 26 C -0.15 -1.14 6.49 -25.20 -0.16 -1.31 16 27 C 0.05 0.45 7.70 37.73 0.29 0.74 16 28 O -0.38 -4.75 11.52 -35.23 -0.41 -5.16 16 29 C 0.06 0.71 6.65 38.21 0.25 0.96 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.24 6.03 -51.93 -0.31 -0.08 16 33 H 0.08 0.60 4.66 -51.93 -0.24 0.36 16 34 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 36 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 37 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 38 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 40 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.04 0.74 7.41 -51.93 -0.38 0.35 16 42 H 0.09 1.70 8.01 -51.93 -0.42 1.28 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 45 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 46 H 0.08 0.53 4.78 -51.93 -0.25 0.28 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 51 H 0.08 0.98 7.21 -51.93 -0.37 0.61 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -33.68 384.50 -8.81 -42.48 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.29 Total: -0.89 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 0.33 Total: 4.65 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.51 Total: -50.14 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.10 Total: -18.92 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.68 -8.81 -42.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035759600.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.818 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds