Wall clock time and date at job start Tue Mar 31 2020 21:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00159 * 2 1 4 4 H 1.09005 * 109.46674 * 7.64310 * 3 2 1 5 5 C 1.50704 * 109.47168 * 127.63916 * 3 2 1 6 6 O 1.21284 * 119.99914 * 5.00500 * 5 3 2 7 7 N 1.34773 * 119.99904 * 185.00200 * 5 3 2 8 8 C 1.46946 * 120.44039 * 359.72498 * 7 5 3 9 9 C 1.54070 * 108.29844 * 125.72277 * 8 7 5 10 10 H 1.08995 * 110.52252 * 172.86746 * 9 8 7 11 11 C 1.53375 * 108.83662 * 294.50905 * 9 8 7 12 12 C 1.53008 * 109.24901 * 60.25399 * 11 9 8 13 13 C 1.53009 * 109.80103 * 60.57890 * 12 11 9 14 14 C 1.53362 * 109.27770 * 299.44116 * 13 12 11 15 15 H 1.09004 * 110.59912 * 178.09790 * 14 13 12 16 16 C 1.46945 * 120.44083 * 180.02562 * 7 5 3 17 17 N 1.47571 * 107.98909 * 56.33531 * 14 13 12 18 18 C 1.36933 * 121.61283 * 122.27895 * 17 14 13 19 19 H 1.07997 * 120.00300 * 333.28347 * 18 17 14 20 20 C 1.38810 * 119.99780 * 153.28614 * 18 17 14 21 21 N 1.31618 * 120.00016 * 343.04595 * 20 18 17 22 22 Si 1.86802 * 119.99936 * 163.05369 * 20 18 17 23 23 H 1.48495 * 109.47492 * 89.99889 * 22 20 18 24 24 H 1.48504 * 109.46814 * 209.99836 * 22 20 18 25 25 H 1.48498 * 109.47138 * 329.99151 * 22 20 18 26 26 C 1.52997 * 109.47116 * 247.63965 * 3 2 1 27 27 H 1.09005 * 111.01884 * 179.97438 * 26 3 2 28 28 C 1.55565 * 111.22499 * 55.66389 * 26 3 2 29 29 C 1.54378 * 102.27696 * 207.98145 * 28 26 3 30 30 O 1.43242 * 107.58578 * 21.35380 * 29 28 26 31 31 C 1.43641 * 109.97231 * 1.71510 * 30 29 28 32 32 H 1.09002 * 109.46909 * 62.44306 * 1 2 3 33 33 H 1.09007 * 109.46942 * 182.43410 * 1 2 3 34 34 H 1.08999 * 109.47892 * 302.43590 * 1 2 3 35 35 H 1.08998 * 109.62079 * 245.48464 * 8 7 5 36 36 H 1.09001 * 109.62468 * 6.05292 * 8 7 5 37 37 H 1.09000 * 109.50725 * 300.32569 * 11 9 8 38 38 H 1.08992 * 109.54628 * 180.20828 * 11 9 8 39 39 H 1.09001 * 109.41850 * 300.48091 * 12 11 9 40 40 H 1.08998 * 109.41706 * 180.67901 * 12 11 9 41 41 H 1.09000 * 109.50500 * 179.49314 * 13 12 11 42 42 H 1.08999 * 109.50277 * 59.37784 * 13 12 11 43 43 H 1.08999 * 109.62418 * 353.96040 * 16 7 5 44 44 H 1.08993 * 109.62782 * 114.54135 * 16 7 5 45 45 H 0.97005 * 119.99841 * 179.97438 * 21 20 18 46 46 H 1.08995 * 110.84463 * 89.78032 * 28 26 3 47 47 H 1.09001 * 111.00982 * 326.25656 * 28 26 3 48 48 H 1.08997 * 109.83061 * 261.84436 * 29 28 26 49 49 H 1.09003 * 109.83498 * 140.86179 * 29 28 26 50 50 H 1.08993 * 110.31529 * 94.48615 * 31 30 29 51 51 H 1.09003 * 110.30737 * 216.55869 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2274 2.0517 0.1367 5 6 3.0072 1.4115 1.1251 6 8 3.2680 0.4367 1.7981 7 7 3.6091 2.5894 1.3834 8 6 3.3049 3.7749 0.5703 9 6 2.8718 4.9118 1.5158 10 1 2.7583 5.8450 0.9643 11 6 1.5513 4.5193 2.1898 12 6 1.7571 3.2324 2.9915 13 6 2.8178 3.4582 4.0709 14 6 4.1433 3.8472 3.4046 15 1 4.9067 4.0461 4.1568 16 6 4.5831 2.7035 2.4777 17 7 3.9002 5.0374 2.5668 18 6 4.5950 6.2021 2.7555 19 1 4.9983 6.4387 3.7290 20 6 4.7811 7.0788 1.6955 21 7 4.5974 6.6654 0.4595 22 14 5.2922 8.8454 2.0232 23 1 6.7743 8.9378 2.0355 24 1 4.7504 9.7236 0.9552 25 1 4.7582 9.2793 3.3391 26 6 2.7190 1.5482 -1.3340 27 1 3.1720 2.5392 -1.3614 28 6 1.7493 1.3413 -2.5328 29 6 2.7100 0.9094 -3.6614 30 8 3.9026 0.4081 -3.0463 31 6 3.7703 0.4456 -1.6165 32 1 -0.3633 0.4754 -0.9111 33 1 -0.3633 -1.0268 0.0436 34 1 -0.3635 0.5512 0.8673 35 1 4.1931 4.0754 0.0146 36 1 2.4959 3.5454 -0.1232 37 1 0.7885 4.3558 1.4285 38 1 1.2321 5.3180 2.8592 39 1 2.0848 2.4370 2.3222 40 1 0.8170 2.9444 3.4620 41 1 2.9541 2.5415 4.6446 42 1 2.4958 4.2597 4.7356 43 1 4.6149 1.7693 3.0384 44 1 5.5694 2.9221 2.0686 45 1 4.7271 7.2781 -0.2812 46 1 1.2444 2.2728 -2.7884 47 1 1.0248 0.5556 -2.3183 48 1 2.9506 1.7665 -4.2903 49 1 2.2468 0.1267 -4.2621 50 1 3.4191 -0.5164 -1.2436 51 1 4.7233 0.7045 -1.1551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039806478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:37 Heat of formation + Delta-G solvation = -64.491029 kcal Electronic energy + Delta-G solvation = -33466.887608 eV Core-core repulsion = 29368.440287 eV Total energy + Delta-G solvation = -4098.447321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.05046 -39.43133 -38.01551 -36.98719 -34.09637 -33.21343 -32.56791 -31.86780 -30.30137 -29.94874 -27.64838 -26.86855 -26.03281 -25.17114 -23.65845 -22.45778 -21.70626 -21.29343 -21.01928 -19.48416 -18.36480 -17.39085 -17.14450 -16.66255 -16.00863 -15.88130 -15.43371 -14.82807 -14.73545 -14.66261 -14.58241 -14.05884 -13.94431 -13.56134 -13.50547 -13.25970 -13.09590 -12.86671 -12.62143 -12.55861 -12.20022 -12.00006 -11.79712 -11.69179 -11.50549 -11.33911 -11.12092 -11.07988 -10.96058 -10.75597 -10.68028 -10.40654 -10.26600 -10.17947 -10.09486 -10.07566 -9.57559 -9.52345 -9.44123 -9.04103 -8.71486 -7.83020 -6.70311 -5.93512 -3.33732 2.87452 3.12450 3.30227 3.38280 3.40314 3.87456 3.92157 4.26554 4.38671 4.61665 4.79903 4.86146 5.03386 5.07202 5.10473 5.23067 5.24025 5.28918 5.33733 5.39304 5.53725 5.60086 5.63289 5.65349 5.67637 5.68116 5.77029 5.83352 5.88729 5.93216 5.97268 6.13392 6.20203 6.29510 6.33071 6.39121 6.43352 6.52406 6.59045 6.64563 6.79500 6.90109 6.94425 7.00365 7.07685 7.16752 7.43574 7.66917 7.92090 8.26805 8.55450 9.04871 9.66574 10.27360 11.14985 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.004552 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.018363 B = 6149.163707 C = 7155.448650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.085 3.915 4 H 0.092 0.908 5 C 0.505 3.495 6 O -0.538 6.538 7 N -0.586 5.586 8 C 0.095 3.905 9 C 0.177 3.823 10 H 0.120 0.880 11 C -0.134 4.134 12 C -0.139 4.139 13 C -0.121 4.121 14 C 0.153 3.847 15 H 0.079 0.921 16 C 0.101 3.899 17 N -0.578 5.578 18 C -0.245 4.245 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.904 5.904 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C -0.141 4.141 27 H 0.114 0.886 28 C -0.151 4.151 29 C 0.055 3.945 30 O -0.385 6.385 31 C 0.063 3.937 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.255 0.745 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -8.529 -4.370 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.271 6.271 3 C 0.023 3.977 4 H 0.110 0.890 5 C 0.293 3.707 6 O -0.416 6.416 7 N -0.320 5.320 8 C -0.028 4.028 9 C 0.070 3.930 10 H 0.137 0.863 11 C -0.173 4.173 12 C -0.177 4.177 13 C -0.160 4.160 14 C 0.046 3.954 15 H 0.097 0.903 16 C -0.023 4.023 17 N -0.299 5.299 18 C -0.374 4.374 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.549 5.549 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.160 4.160 27 H 0.131 0.869 28 C -0.189 4.189 29 C -0.022 4.022 30 O -0.304 6.304 31 C -0.013 4.013 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.217 -9.152 -4.268 13.019 hybrid contribution -0.250 1.406 0.203 1.442 sum -8.466 -7.746 -4.066 12.174 Atomic orbital electron populations 1.22971 0.80989 1.03089 1.00050 1.87993 1.19415 1.25148 1.94547 1.21803 0.95860 0.86885 0.93161 0.89025 1.20211 0.82448 0.83114 0.84945 1.90675 1.63939 1.36539 1.50467 1.48243 1.41611 1.09183 1.32995 1.22744 1.01201 0.85128 0.93745 1.21225 0.85310 0.97456 0.89043 0.86308 1.22148 0.98967 0.97260 0.98904 1.22094 0.97314 0.99483 0.98812 1.21900 0.97104 0.99567 0.97451 1.21242 0.94659 0.87014 0.92534 0.90309 1.22258 0.91203 1.00024 0.88802 1.44351 1.40495 1.08334 1.36725 1.19167 1.29227 0.94967 0.94072 0.91481 1.24934 1.00196 0.99346 0.94985 1.69902 1.53370 1.34191 0.97434 0.86273 0.78241 0.84770 0.77332 1.21457 1.21596 1.20622 1.23512 0.97069 1.02070 0.93358 0.86854 1.23231 0.98545 1.02759 0.94323 1.23047 0.85396 0.98452 0.95298 1.88384 1.37428 1.85713 1.18885 1.23320 0.98745 0.98341 0.80868 0.93839 0.89277 0.93719 0.89197 0.92030 0.94020 0.92545 0.90080 0.94951 0.93378 0.92604 0.90333 0.91601 0.93521 0.89784 0.89939 0.91254 0.91672 0.90792 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.28 101.05 1.04 1.30 16 2 O -0.35 -5.04 8.28 -55.09 -0.46 -5.49 16 3 C 0.08 1.21 1.67 -27.88 -0.05 1.16 16 4 H 0.09 1.19 6.92 -51.93 -0.36 0.83 16 5 C 0.51 8.89 3.94 -10.99 -0.04 8.85 16 6 O -0.54 -11.14 15.90 -14.30 -0.23 -11.36 16 7 N -0.59 -10.53 1.63 -171.92 -0.28 -10.81 16 8 C 0.10 1.73 4.45 -3.24 -0.01 1.72 16 9 C 0.18 3.61 2.63 -66.59 -0.18 3.44 16 10 H 0.12 2.76 5.86 -51.93 -0.30 2.46 16 11 C -0.13 -2.39 5.59 -26.53 -0.15 -2.54 16 12 C -0.14 -2.43 5.55 -26.72 -0.15 -2.58 16 13 C -0.12 -2.18 5.58 -26.54 -0.15 -2.33 16 14 C 0.15 3.00 3.61 -66.83 -0.24 2.76 16 15 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 16 C 0.10 1.91 5.89 -3.47 -0.02 1.89 16 17 N -0.58 -12.85 2.54 -155.12 -0.39 -13.24 16 18 C -0.25 -6.10 9.74 -15.06 -0.15 -6.25 16 19 H 0.07 1.67 7.88 -52.49 -0.41 1.26 16 20 C 0.00 0.09 5.03 -17.43 -0.09 0.00 16 21 N -0.90 -22.99 10.64 55.49 0.59 -22.40 16 22 Si 0.90 20.29 29.59 -169.99 -5.03 15.26 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 26 C -0.14 -1.88 2.50 -88.23 -0.22 -2.10 16 27 H 0.11 1.59 5.54 -51.93 -0.29 1.30 16 28 C -0.15 -1.59 6.44 -24.64 -0.16 -1.75 16 29 C 0.05 0.62 7.80 37.88 0.30 0.92 16 30 O -0.38 -5.73 11.36 -35.23 -0.40 -6.13 16 31 C 0.06 0.94 6.70 38.18 0.26 1.20 16 32 H 0.04 0.36 6.90 -51.93 -0.36 0.00 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 1.89 7.79 -51.93 -0.40 1.48 16 36 H 0.06 0.96 4.61 -51.93 -0.24 0.72 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.45 2.50 -52.43 -0.13 1.32 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.25 6.38 8.31 -40.82 -0.34 6.04 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.82 5.69 -51.93 -0.30 0.53 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 1.16 7.24 -51.93 -0.38 0.78 16 51 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -28.51 370.59 -8.78 -37.29 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.16 Total: 5.61 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -0.01 Total: 5.69 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.08 Total: -46.45 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -1.08 Total: -22.99 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.51 -8.78 -37.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039806478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.197 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds