Wall clock time and date at job start Tue Mar 31 2020 21:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99900 * 2 1 4 4 H 1.09004 * 109.47686 * 344.36717 * 3 2 1 5 5 C 1.50700 * 109.47023 * 104.36965 * 3 2 1 6 6 O 1.21279 * 120.00027 * 11.79302 * 5 3 2 7 7 N 1.34778 * 120.00001 * 191.78758 * 5 3 2 8 8 C 1.46942 * 120.43902 * 355.51073 * 7 5 3 9 9 C 1.53595 * 108.55689 * 125.79408 * 8 7 5 10 10 H 1.08996 * 110.60048 * 172.71757 * 9 8 7 11 11 C 1.53370 * 108.69070 * 294.31350 * 9 8 7 12 12 C 1.53014 * 109.25013 * 60.25098 * 11 9 8 13 13 C 1.53007 * 109.79988 * 60.58079 * 12 11 9 14 14 C 1.53373 * 109.30965 * 299.42360 * 13 12 11 15 15 H 1.09000 * 110.59293 * 178.11348 * 14 13 12 16 16 C 1.46944 * 120.44189 * 175.52712 * 7 5 3 17 17 N 1.47577 * 107.76697 * 51.09586 * 9 8 7 18 18 C 1.36928 * 121.61287 * 120.53353 * 17 9 8 19 19 H 1.07995 * 120.00491 * 150.15958 * 18 17 9 20 20 C 1.38821 * 119.99831 * 330.15756 * 18 17 9 21 21 N 1.31615 * 119.99918 * 348.78472 * 20 18 17 22 22 Si 1.86799 * 119.99810 * 168.78130 * 20 18 17 23 23 H 1.48501 * 109.47206 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46984 * 120.00255 * 22 20 18 25 25 H 1.48501 * 109.47084 * 240.00032 * 22 20 18 26 26 C 1.53001 * 109.47156 * 224.36820 * 3 2 1 27 27 H 1.08995 * 110.46052 * 181.76896 * 26 3 2 28 28 C 1.54510 * 110.51286 * 304.37783 * 26 3 2 29 29 C 1.54477 * 104.06568 * 118.64491 * 28 26 3 30 30 O 1.44427 * 104.80444 * 23.97688 * 29 28 26 31 31 C 1.44430 * 105.27551 * 319.49188 * 30 29 28 32 32 H 1.09003 * 109.47177 * 175.36200 * 1 2 3 33 33 H 1.09007 * 109.46754 * 295.35872 * 1 2 3 34 34 H 1.08998 * 109.48040 * 55.35610 * 1 2 3 35 35 H 1.08999 * 109.62873 * 6.07589 * 8 7 5 36 36 H 1.09002 * 109.77967 * 245.60169 * 8 7 5 37 37 H 1.09003 * 109.50916 * 300.32354 * 11 9 8 38 38 H 1.08996 * 109.50977 * 180.18333 * 11 9 8 39 39 H 1.09001 * 109.41805 * 300.47940 * 12 11 9 40 40 H 1.08995 * 109.36023 * 180.64554 * 12 11 9 41 41 H 1.08995 * 109.50712 * 59.38442 * 13 12 11 42 42 H 1.08998 * 109.50339 * 179.46731 * 13 12 11 43 43 H 1.09000 * 109.62664 * 353.94021 * 16 7 5 44 44 H 1.08999 * 109.62613 * 114.32112 * 16 7 5 45 45 H 0.96999 * 119.99969 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.50938 * 237.29139 * 28 26 3 47 47 H 1.08996 * 110.50911 * 359.85972 * 28 26 3 48 48 H 1.08991 * 110.37463 * 142.80671 * 29 28 26 49 49 H 1.08999 * 110.37322 * 265.15023 * 29 28 26 50 50 H 1.09003 * 110.37042 * 281.67967 * 31 30 29 51 51 H 1.08994 * 110.37091 * 159.33904 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2539 2.0400 -0.2769 5 6 2.5366 1.6209 1.3764 6 8 2.6218 0.7431 2.2089 7 7 2.9128 2.8785 1.6821 8 6 2.9068 3.9281 0.6538 9 6 2.0661 5.1078 1.1643 10 1 2.1435 5.9564 0.4846 11 6 0.6075 4.6519 1.2943 12 6 0.5283 3.4916 2.2886 13 6 1.0298 3.9490 3.6599 14 6 2.4901 4.4027 3.5404 15 1 2.8588 4.7647 4.5001 16 6 3.3347 3.2181 3.0481 17 7 2.5552 5.4597 2.5114 18 6 3.0455 6.7066 2.7940 19 1 2.9485 7.1120 3.7902 20 6 3.6674 7.4495 1.7998 21 7 3.9843 6.8822 0.6552 22 14 4.0544 9.2543 2.0865 23 1 3.5996 9.6485 3.4441 24 1 5.5191 9.4707 1.9723 25 1 3.3516 10.0787 1.0707 26 6 3.1596 1.3519 -1.0087 27 1 3.6352 2.3326 -0.9994 28 6 4.1939 0.2457 -0.7023 29 6 4.1873 -0.6362 -1.9706 30 8 3.7139 0.2333 -3.0222 31 6 2.6504 1.0075 -2.4259 32 1 -0.3634 -1.0243 -0.0831 33 1 -0.3633 0.4402 0.9287 34 1 -0.3635 0.5842 -0.8454 35 1 2.4696 3.5378 -0.2653 36 1 3.9265 4.2617 0.4612 37 1 0.2407 4.3235 0.3218 38 1 -0.0024 5.4810 1.6531 39 1 1.1463 2.6670 1.9333 40 1 -0.5061 3.1587 2.3738 41 1 0.4185 4.7796 4.0126 42 1 0.9625 3.1218 4.3665 43 1 3.1791 2.3609 3.7031 44 1 4.3897 3.4920 3.0479 45 1 4.4186 7.4014 -0.0396 46 1 5.1813 0.6794 -0.5438 47 1 3.8876 -0.3327 0.1692 48 1 5.1946 -0.9877 -2.1936 49 1 3.5096 -1.4802 -1.8424 50 1 1.7370 0.4156 -2.3675 51 1 2.4772 1.9185 -2.9987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039806479.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:41 Heat of formation + Delta-G solvation = -67.778594 kcal Electronic energy + Delta-G solvation = -33507.375456 eV Core-core repulsion = 29408.785575 eV Total energy + Delta-G solvation = -4098.589881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.06421 -39.41464 -38.00120 -36.90300 -34.05649 -33.23747 -32.63154 -31.89176 -30.30473 -29.57520 -27.76555 -26.88011 -25.97138 -25.12453 -23.56126 -22.77762 -21.75771 -21.28133 -20.81325 -19.38431 -18.36217 -17.42087 -16.96452 -16.54753 -16.04371 -15.88267 -15.37787 -15.09300 -14.74179 -14.66978 -14.52426 -14.07714 -13.97951 -13.53566 -13.44637 -13.17720 -12.90799 -12.84515 -12.65376 -12.57102 -12.19367 -12.00280 -11.80972 -11.46688 -11.40728 -11.22766 -11.11071 -11.00395 -10.86888 -10.81209 -10.64713 -10.39640 -10.30672 -10.24537 -10.16070 -10.08557 -9.79570 -9.59138 -9.50710 -8.97550 -8.70124 -7.82854 -6.66313 -5.93115 -3.38919 2.89423 3.21742 3.29048 3.38200 3.39162 3.79952 4.00885 4.36724 4.47578 4.69293 4.81463 4.92474 5.05233 5.10206 5.18443 5.23639 5.24408 5.33931 5.38965 5.48553 5.58913 5.60714 5.63345 5.65842 5.69200 5.75309 5.76637 5.84753 5.89506 5.96122 6.06069 6.14090 6.19109 6.29452 6.33345 6.37430 6.43146 6.52709 6.59028 6.63854 6.77315 6.78701 6.90599 6.94332 7.08078 7.17961 7.46960 7.66542 7.94222 8.29141 8.56568 9.05525 9.65219 10.27507 11.14782 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.004424 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.646317 B = 6328.298859 C = 7249.571859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.081 3.919 4 H 0.089 0.911 5 C 0.498 3.502 6 O -0.543 6.543 7 N -0.587 5.587 8 C 0.097 3.903 9 C 0.177 3.823 10 H 0.121 0.879 11 C -0.135 4.135 12 C -0.140 4.140 13 C -0.121 4.121 14 C 0.153 3.847 15 H 0.079 0.921 16 C 0.102 3.898 17 N -0.579 5.579 18 C -0.245 4.245 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.906 5.906 22 Si 0.906 3.094 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C -0.126 4.126 27 H 0.108 0.892 28 C -0.147 4.147 29 C 0.051 3.949 30 O -0.376 6.376 31 C 0.055 3.945 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.031 0.969 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.255 0.745 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 -10.538 -4.169 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.272 6.272 3 C 0.019 3.981 4 H 0.107 0.893 5 C 0.286 3.714 6 O -0.421 6.421 7 N -0.320 5.320 8 C -0.026 4.026 9 C 0.069 3.931 10 H 0.139 0.861 11 C -0.174 4.174 12 C -0.178 4.178 13 C -0.161 4.161 14 C 0.045 3.955 15 H 0.097 0.903 16 C -0.022 4.022 17 N -0.300 5.300 18 C -0.374 4.374 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.551 5.551 22 Si 0.736 3.264 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.145 4.145 27 H 0.126 0.874 28 C -0.185 4.185 29 C -0.026 4.026 30 O -0.295 6.295 31 C -0.022 4.022 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.784 -11.039 -4.072 12.701 hybrid contribution -0.123 1.312 0.370 1.369 sum -4.906 -9.727 -3.702 11.506 Atomic orbital electron populations 1.22910 0.80904 1.02876 1.00240 1.87957 1.19568 1.25202 1.94476 1.21989 0.96450 0.86673 0.92985 0.89321 1.20577 0.78621 0.82434 0.89736 1.90656 1.55325 1.45905 1.50202 1.48275 1.63555 1.08348 1.11871 1.22586 1.03625 0.88242 0.88172 1.21153 0.87280 0.95584 0.89033 0.86134 1.22172 1.00430 0.97739 0.97029 1.22113 0.99133 0.99893 0.96615 1.21905 0.98426 0.99370 0.96358 1.21255 0.92300 0.88341 0.93567 0.90323 1.22216 0.98998 0.98653 0.82354 1.44335 1.71450 1.08508 1.05669 1.19219 1.30175 0.90951 0.97084 0.91545 1.25050 0.97861 0.98945 0.97452 1.69844 1.44131 1.34943 1.06171 0.86159 0.77671 0.84893 0.77640 1.20374 1.21693 1.21619 1.22898 0.95239 1.01940 0.94470 0.87371 1.22920 0.99103 0.96810 0.99636 1.23368 0.99726 0.93210 0.86285 1.89090 1.51886 1.54008 1.34515 1.23399 0.91048 0.95959 0.91750 0.89338 0.93772 0.93862 0.92178 0.89213 0.93992 0.92568 0.90131 0.94992 0.92592 0.93485 0.90548 0.91742 0.93506 0.90798 0.89115 0.89453 0.92061 0.91711 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.79 101.05 1.09 1.39 16 2 O -0.35 -5.03 8.31 -54.86 -0.46 -5.48 16 3 C 0.08 1.15 1.32 -27.88 -0.04 1.12 16 4 H 0.09 1.17 6.64 -51.93 -0.34 0.83 16 5 C 0.50 8.72 3.72 -10.98 -0.04 8.68 16 6 O -0.54 -11.08 15.72 -14.07 -0.22 -11.30 16 7 N -0.59 -10.57 1.65 -172.25 -0.28 -10.85 16 8 C 0.10 1.78 4.63 -3.49 -0.02 1.77 16 9 C 0.18 3.62 2.61 -66.84 -0.17 3.44 16 10 H 0.12 2.82 5.90 -51.93 -0.31 2.51 16 11 C -0.13 -2.40 5.59 -26.53 -0.15 -2.55 16 12 C -0.14 -2.41 5.55 -26.72 -0.15 -2.56 16 13 C -0.12 -2.17 5.58 -26.53 -0.15 -2.32 16 14 C 0.15 3.00 3.62 -66.80 -0.24 2.75 16 15 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 16 C 0.10 1.93 5.87 -3.49 -0.02 1.91 16 17 N -0.58 -12.86 2.53 -155.36 -0.39 -13.26 16 18 C -0.24 -6.09 9.75 -15.06 -0.15 -6.24 16 19 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 20 C 0.01 0.13 5.13 -17.43 -0.09 0.04 16 21 N -0.91 -23.02 10.42 55.49 0.58 -22.44 16 22 Si 0.91 20.30 29.57 -169.99 -5.03 15.27 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.13 -1.69 2.58 -89.05 -0.23 -1.92 16 27 H 0.11 1.51 5.95 -51.93 -0.31 1.20 16 28 C -0.15 -1.99 6.09 -25.16 -0.15 -2.14 16 29 C 0.05 0.61 7.63 37.93 0.29 0.90 16 30 O -0.38 -5.14 11.65 -35.23 -0.41 -5.56 16 31 C 0.06 0.67 7.09 37.94 0.27 0.94 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.39 8.04 -51.93 -0.42 -0.02 16 35 H 0.06 0.94 4.63 -51.93 -0.24 0.70 16 36 H 0.09 1.90 7.69 -51.93 -0.40 1.50 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.42 2.34 -52.42 -0.12 1.29 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.43 7.01 -51.93 -0.36 1.06 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.09 1.39 6.82 -51.93 -0.35 1.03 16 48 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.06 0.74 7.23 -51.93 -0.38 0.36 16 51 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -28.16 372.87 -8.81 -36.97 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.27 Total: 5.81 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 0.05 Total: 5.21 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.10 Total: -46.54 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -1.09 Total: -22.34 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.16 -8.81 -36.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039806479.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.804 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds