Wall clock time and date at job start Tue Mar 31 2020 21:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99900 * 2 1 4 4 H 1.09004 * 109.47686 * 344.36717 * 3 2 1 5 5 C 1.50700 * 109.47023 * 104.36965 * 3 2 1 6 6 O 1.21279 * 120.00027 * 11.79302 * 5 3 2 7 7 N 1.34778 * 120.00001 * 191.78758 * 5 3 2 8 8 C 1.46942 * 120.43902 * 355.51073 * 7 5 3 9 9 C 1.53595 * 108.55689 * 125.79408 * 8 7 5 10 10 H 1.08996 * 110.60048 * 172.71757 * 9 8 7 11 11 C 1.53370 * 108.69070 * 294.31350 * 9 8 7 12 12 C 1.53014 * 109.25013 * 60.25098 * 11 9 8 13 13 C 1.53007 * 109.79988 * 60.58079 * 12 11 9 14 14 C 1.53373 * 109.30965 * 299.42360 * 13 12 11 15 15 H 1.09000 * 110.59293 * 178.11348 * 14 13 12 16 16 C 1.46944 * 120.44189 * 175.52712 * 7 5 3 17 17 N 1.47577 * 107.76697 * 51.09586 * 9 8 7 18 18 C 1.36928 * 121.61287 * 120.53353 * 17 9 8 19 19 H 1.07995 * 120.00491 * 150.15958 * 18 17 9 20 20 C 1.38821 * 119.99831 * 330.15756 * 18 17 9 21 21 N 1.31615 * 119.99918 * 348.78472 * 20 18 17 22 22 Si 1.86799 * 119.99810 * 168.78130 * 20 18 17 23 23 H 1.48501 * 109.47206 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46984 * 120.00255 * 22 20 18 25 25 H 1.48501 * 109.47084 * 240.00032 * 22 20 18 26 26 C 1.53001 * 109.47156 * 224.36820 * 3 2 1 27 27 H 1.08995 * 110.46052 * 181.76896 * 26 3 2 28 28 C 1.54510 * 110.51286 * 304.37783 * 26 3 2 29 29 C 1.54477 * 104.06568 * 118.64491 * 28 26 3 30 30 O 1.44427 * 104.80444 * 23.97688 * 29 28 26 31 31 C 1.44430 * 105.27551 * 319.49188 * 30 29 28 32 32 H 1.09003 * 109.47177 * 175.36200 * 1 2 3 33 33 H 1.09007 * 109.46754 * 295.35872 * 1 2 3 34 34 H 1.08998 * 109.48040 * 55.35610 * 1 2 3 35 35 H 1.08999 * 109.62873 * 6.07589 * 8 7 5 36 36 H 1.09002 * 109.77967 * 245.60169 * 8 7 5 37 37 H 1.09003 * 109.50916 * 300.32354 * 11 9 8 38 38 H 1.08996 * 109.50977 * 180.18333 * 11 9 8 39 39 H 1.09001 * 109.41805 * 300.47940 * 12 11 9 40 40 H 1.08995 * 109.36023 * 180.64554 * 12 11 9 41 41 H 1.08995 * 109.50712 * 59.38442 * 13 12 11 42 42 H 1.08998 * 109.50339 * 179.46731 * 13 12 11 43 43 H 1.09000 * 109.62664 * 353.94021 * 16 7 5 44 44 H 1.08999 * 109.62613 * 114.32112 * 16 7 5 45 45 H 0.96999 * 119.99969 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.50938 * 237.29139 * 28 26 3 47 47 H 1.08996 * 110.50911 * 359.85972 * 28 26 3 48 48 H 1.08991 * 110.37463 * 142.80671 * 29 28 26 49 49 H 1.08999 * 110.37322 * 265.15023 * 29 28 26 50 50 H 1.09003 * 110.37042 * 281.67967 * 31 30 29 51 51 H 1.08994 * 110.37091 * 159.33904 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2539 2.0400 -0.2769 5 6 2.5366 1.6209 1.3764 6 8 2.6218 0.7431 2.2089 7 7 2.9128 2.8785 1.6821 8 6 2.9068 3.9281 0.6538 9 6 2.0661 5.1078 1.1643 10 1 2.1435 5.9564 0.4846 11 6 0.6075 4.6519 1.2943 12 6 0.5283 3.4916 2.2886 13 6 1.0298 3.9490 3.6599 14 6 2.4901 4.4027 3.5404 15 1 2.8588 4.7647 4.5001 16 6 3.3347 3.2181 3.0481 17 7 2.5552 5.4597 2.5114 18 6 3.0455 6.7066 2.7940 19 1 2.9485 7.1120 3.7902 20 6 3.6674 7.4495 1.7998 21 7 3.9843 6.8822 0.6552 22 14 4.0544 9.2543 2.0865 23 1 3.5996 9.6485 3.4441 24 1 5.5191 9.4707 1.9723 25 1 3.3516 10.0787 1.0707 26 6 3.1596 1.3519 -1.0087 27 1 3.6352 2.3326 -0.9994 28 6 4.1939 0.2457 -0.7023 29 6 4.1873 -0.6362 -1.9706 30 8 3.7139 0.2333 -3.0222 31 6 2.6504 1.0075 -2.4259 32 1 -0.3634 -1.0243 -0.0831 33 1 -0.3633 0.4402 0.9287 34 1 -0.3635 0.5842 -0.8454 35 1 2.4696 3.5378 -0.2653 36 1 3.9265 4.2617 0.4612 37 1 0.2407 4.3235 0.3218 38 1 -0.0024 5.4810 1.6531 39 1 1.1463 2.6670 1.9333 40 1 -0.5061 3.1587 2.3738 41 1 0.4185 4.7796 4.0126 42 1 0.9625 3.1218 4.3665 43 1 3.1791 2.3609 3.7031 44 1 4.3897 3.4920 3.0479 45 1 4.4186 7.4014 -0.0396 46 1 5.1813 0.6794 -0.5438 47 1 3.8876 -0.3327 0.1692 48 1 5.1946 -0.9877 -2.1936 49 1 3.5096 -1.4802 -1.8424 50 1 1.7370 0.4156 -2.3675 51 1 2.4772 1.9185 -2.9987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039806479.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:40 Heat of formation + Delta-G solvation = -82.829215 kcal Electronic energy + Delta-G solvation = -33508.028100 eV Core-core repulsion = 29408.785575 eV Total energy + Delta-G solvation = -4099.242524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.43904 -40.58291 -39.28920 -38.12036 -35.62762 -34.80825 -33.92288 -33.31505 -32.02991 -30.60677 -29.08365 -28.06494 -27.33995 -26.41695 -25.24304 -23.75789 -23.26364 -22.82457 -21.97194 -20.68454 -20.01304 -18.83186 -18.12873 -17.77056 -17.37935 -17.08714 -16.76768 -16.38868 -16.15797 -16.01779 -15.70055 -15.48648 -15.31729 -15.03825 -14.65284 -14.59404 -14.46025 -14.14048 -14.00153 -13.85623 -13.58104 -13.51189 -13.04981 -12.81545 -12.76718 -12.63564 -12.46516 -12.39421 -12.32201 -12.09543 -11.92492 -11.87916 -11.77056 -11.74450 -11.65669 -11.38409 -11.14253 -11.03182 -10.76507 -10.62029 -10.21766 -9.41583 -8.40380 -7.82043 -5.28968 1.47917 1.51476 1.53133 1.59861 1.90469 2.53065 2.71558 3.02632 3.31400 3.33762 3.48447 3.60556 3.70297 3.89807 4.03705 4.08997 4.13900 4.16169 4.21529 4.25610 4.33907 4.39203 4.41805 4.47892 4.51821 4.56950 4.65144 4.76129 4.77513 4.79517 4.82431 4.85070 4.86224 4.92276 4.97377 5.02417 5.03030 5.07026 5.12768 5.20077 5.30291 5.44459 5.49538 5.61841 5.68361 5.81454 5.86273 6.00330 6.43150 6.52450 7.14583 7.20430 7.83919 8.43674 9.22311 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.004424 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.646317 B = 6328.298859 C = 7249.571859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.369 6.369 3 C 0.090 3.910 4 H 0.107 0.893 5 C 0.500 3.500 6 O -0.572 6.572 7 N -0.587 5.587 8 C 0.113 3.887 9 C 0.172 3.828 10 H 0.092 0.908 11 C -0.126 4.126 12 C -0.137 4.137 13 C -0.116 4.116 14 C 0.149 3.851 15 H 0.074 0.926 16 C 0.108 3.892 17 N -0.593 5.593 18 C -0.256 4.256 19 H 0.058 0.942 20 C -0.034 4.034 21 N -0.919 5.919 22 Si 0.959 3.041 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.291 1.291 26 C -0.127 4.127 27 H 0.100 0.900 28 C -0.147 4.147 29 C 0.054 3.946 30 O -0.391 6.391 31 C 0.058 3.942 32 H 0.106 0.894 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.251 0.749 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 -11.537 -5.345 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.286 6.286 3 C 0.028 3.972 4 H 0.125 0.875 5 C 0.290 3.710 6 O -0.452 6.452 7 N -0.320 5.320 8 C -0.011 4.011 9 C 0.065 3.935 10 H 0.110 0.890 11 C -0.165 4.165 12 C -0.174 4.174 13 C -0.155 4.155 14 C 0.042 3.958 15 H 0.092 0.908 16 C -0.017 4.017 17 N -0.314 5.314 18 C -0.386 4.386 19 H 0.076 0.924 20 C -0.231 4.231 21 N -0.565 5.565 22 Si 0.789 3.211 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.218 1.218 26 C -0.146 4.146 27 H 0.118 0.882 28 C -0.185 4.185 29 C -0.022 4.022 30 O -0.310 6.310 31 C -0.018 4.018 32 H 0.125 0.875 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.120 0.880 49 H 0.086 0.914 50 H 0.095 0.905 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.373 -12.054 -5.248 14.610 hybrid contribution 0.370 1.575 0.799 1.804 sum -6.003 -10.479 -4.450 12.870 Atomic orbital electron populations 1.23162 0.79175 1.04605 1.00817 1.87960 1.21493 1.24813 1.94331 1.21913 0.97048 0.87540 0.90688 0.87545 1.21204 0.77570 0.81414 0.90812 1.90640 1.56482 1.46545 1.51552 1.48261 1.63720 1.08743 1.11270 1.22316 1.01673 0.87856 0.89227 1.21117 0.89371 0.95309 0.87675 0.89042 1.22055 0.98078 0.97574 0.98787 1.22086 1.00213 0.99385 0.95763 1.21826 0.96751 0.99552 0.97359 1.21341 0.93755 0.87876 0.92815 0.90808 1.22027 0.97878 0.98445 0.83337 1.44490 1.71693 1.08355 1.06892 1.19366 1.30083 0.92333 0.96808 0.92416 1.25569 0.98336 1.01590 0.97585 1.69968 1.44596 1.35495 1.06400 0.85338 0.76750 0.81671 0.77347 1.20149 1.22382 1.21787 1.22891 0.94929 1.01407 0.95381 0.88182 1.22871 0.98866 0.97033 0.99714 1.23413 1.00833 0.92828 0.85132 1.89079 1.52467 1.54404 1.35096 1.23493 0.90934 0.96760 0.90622 0.87522 0.94666 0.91416 0.89095 0.92374 0.91030 0.93741 0.90244 0.93031 0.93069 0.92276 0.90221 0.93581 0.93969 0.91357 0.91012 0.87986 0.91355 0.90525 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.79 113.37 1.22 1.56 16 2 O -0.37 -9.47 8.31 -130.21 -1.08 -10.56 16 3 C 0.09 2.35 1.32 29.85 0.04 2.39 16 4 H 0.11 2.41 6.64 -2.38 -0.02 2.40 16 5 C 0.50 16.87 3.72 87.66 0.33 17.19 16 6 O -0.57 -22.91 15.72 15.74 0.25 -22.66 16 7 N -0.59 -20.79 1.65 -817.27 -1.35 -22.14 16 8 C 0.11 4.07 4.63 86.50 0.40 4.47 16 9 C 0.17 6.97 2.61 45.11 0.12 7.09 16 10 H 0.09 4.30 5.90 -2.39 -0.01 4.29 16 11 C -0.13 -4.24 5.59 30.72 0.17 -4.07 16 12 C -0.14 -4.39 5.55 30.60 0.17 -4.22 16 13 C -0.12 -4.00 5.58 30.72 0.17 -3.83 16 14 C 0.15 5.86 3.62 45.09 0.16 6.03 16 15 H 0.07 2.90 8.03 -2.39 -0.02 2.88 16 16 C 0.11 4.12 5.87 86.49 0.51 4.62 16 17 N -0.59 -26.59 2.53 -645.44 -1.63 -28.23 16 18 C -0.26 -12.93 9.75 84.04 0.82 -12.11 16 19 H 0.06 2.95 7.85 -2.91 -0.02 2.93 16 20 C -0.03 -1.74 5.13 84.86 0.44 -1.31 16 21 N -0.92 -47.46 10.42 21.65 0.23 -47.24 16 22 Si 0.96 42.26 29.57 68.60 2.03 44.29 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 26 C -0.13 -3.16 2.58 -9.78 -0.03 -3.19 16 27 H 0.10 2.65 5.95 -2.39 -0.01 2.64 16 28 C -0.15 -3.83 6.09 31.61 0.19 -3.64 16 29 C 0.05 1.21 7.63 72.48 0.55 1.77 16 30 O -0.39 -9.77 11.65 -148.98 -1.74 -11.51 16 31 C 0.06 1.24 7.09 72.49 0.51 1.75 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 0.93 8.04 -2.39 -0.02 0.92 16 35 H 0.09 2.68 4.63 -2.39 -0.01 2.67 16 36 H 0.06 2.50 7.69 -2.39 -0.02 2.48 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 2.61 2.34 -3.35 -0.01 2.60 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 2.98 7.01 -2.39 -0.02 2.97 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.25 12.72 8.31 -92.71 -0.77 11.95 16 46 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 2.16 6.82 -2.39 -0.02 2.14 16 48 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.08 1.46 7.23 -2.39 -0.02 1.44 16 51 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -60.68 372.87 3.41 -57.27 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.92 Total: 26.24 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.78 Total: 14.53 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -2.76 Total: -97.60 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -2.57 Total: -44.73 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -60.68 3.41 -57.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039806479.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.559 kcal (2) G-P(sol) polarization free energy of solvation -60.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds