Wall clock time and date at job start Tue Mar 31 2020 21:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99906 * 2 1 4 4 H 1.08999 * 109.47466 * 29.99752 * 3 2 1 5 5 C 1.50703 * 109.47200 * 270.00143 * 3 2 1 6 6 O 1.21289 * 119.99655 * 329.78042 * 5 3 2 7 7 N 1.34771 * 120.00320 * 149.78098 * 5 3 2 8 8 C 1.46953 * 120.44141 * 174.75901 * 7 5 3 9 9 C 1.53676 * 108.54584 * 125.73233 * 8 7 5 10 10 H 1.08998 * 110.64728 * 172.78996 * 9 8 7 11 11 C 1.53358 * 108.64811 * 294.39261 * 9 8 7 12 12 C 1.53013 * 109.31361 * 60.29665 * 11 9 8 13 13 C 1.53004 * 109.79944 * 60.53580 * 12 11 9 14 14 C 1.53365 * 109.25052 * 299.42397 * 13 12 11 15 15 H 1.09003 * 110.59654 * 178.14960 * 14 13 12 16 16 C 1.46943 * 120.44066 * 354.73420 * 7 5 3 17 17 N 1.47566 * 107.98588 * 56.39307 * 14 13 12 18 18 C 1.36934 * 121.61595 * 122.22060 * 17 14 13 19 19 H 1.08001 * 120.00242 * 328.42903 * 18 17 14 20 20 C 1.38811 * 120.00103 * 148.42801 * 18 17 14 21 21 N 1.31616 * 120.00071 * 344.88075 * 20 18 17 22 22 Si 1.86808 * 120.00101 * 164.88374 * 20 18 17 23 23 H 1.48500 * 109.47020 * 89.99508 * 22 20 18 24 24 H 1.48494 * 109.47272 * 210.00300 * 22 20 18 25 25 H 1.48498 * 109.46689 * 330.00033 * 22 20 18 26 26 C 1.52994 * 109.47265 * 150.00214 * 3 2 1 27 27 H 1.08998 * 110.43596 * 62.00898 * 26 3 2 28 28 C 1.54813 * 110.48948 * 299.32256 * 26 3 2 29 29 C 1.54994 * 102.09480 * 220.44235 * 28 26 3 30 30 O 1.44379 * 103.48772 * 37.02592 * 29 28 26 31 31 C 1.43742 * 106.97639 * 319.93374 * 30 29 28 32 32 H 1.09004 * 109.46921 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47237 * 300.00118 * 1 2 3 34 34 H 1.08997 * 109.47374 * 59.99769 * 1 2 3 35 35 H 1.09001 * 109.62446 * 245.44201 * 8 7 5 36 36 H 1.08995 * 109.62832 * 5.82587 * 8 7 5 37 37 H 1.09003 * 109.50247 * 300.33676 * 11 9 8 38 38 H 1.08998 * 109.50701 * 180.25816 * 11 9 8 39 39 H 1.08999 * 109.41422 * 180.64078 * 12 11 9 40 40 H 1.09003 * 109.41527 * 300.43652 * 12 11 9 41 41 H 1.09000 * 109.50742 * 59.35730 * 13 12 11 42 42 H 1.08997 * 109.50797 * 179.49177 * 13 12 11 43 43 H 1.09000 * 109.61971 * 114.52769 * 16 7 5 44 44 H 1.08994 * 109.62085 * 353.96818 * 16 7 5 45 45 H 0.97003 * 120.00210 * 179.97438 * 21 20 18 46 46 H 1.09007 * 110.90293 * 338.64449 * 28 26 3 47 47 H 1.09007 * 110.90649 * 102.24083 * 28 26 3 48 48 H 1.08997 * 110.61830 * 278.52116 * 29 28 26 49 49 H 1.09002 * 110.74835 * 155.58867 * 29 28 26 50 50 H 1.08995 * 109.88431 * 267.09748 * 31 30 29 51 51 H 1.08994 * 110.00417 * 146.00980 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 2.4316 0.9522 -2.2951 7 7 2.1560 3.0771 -1.7200 8 6 2.4665 3.5459 -3.0777 9 6 1.2838 4.3843 -3.5877 10 1 1.5285 4.8547 -4.5400 11 6 0.0620 3.4693 -3.7361 12 6 -0.2844 2.8629 -2.3746 13 6 -0.6160 3.9773 -1.3801 14 6 0.6040 4.8930 -1.2215 15 1 0.3806 5.7150 -0.5413 16 6 1.7803 4.0587 -0.6931 17 7 0.9733 5.3957 -2.5588 18 6 1.0247 6.7364 -2.8328 19 1 0.3581 7.4174 -2.3245 20 6 1.9335 7.2203 -3.7638 21 7 2.9342 6.4635 -4.1615 22 14 1.7364 8.9457 -4.4522 23 1 2.4778 9.9073 -3.5974 24 1 2.2777 8.9921 -5.8342 25 1 0.2967 9.3091 -4.4720 26 6 3.3589 1.2633 0.7212 27 1 4.0489 0.6002 0.1994 28 6 3.1740 0.8104 2.1900 29 6 4.1548 1.7443 2.9437 30 8 4.0395 2.9966 2.2345 31 6 3.9543 2.6801 0.8350 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 3.3674 4.1591 -3.0562 36 1 2.6219 2.6898 -3.7341 37 1 0.2888 2.6711 -4.4429 38 1 -0.7850 4.0497 -4.1020 39 1 -1.1457 2.2033 -2.4804 40 1 0.5665 2.2898 -2.0062 41 1 -1.4607 4.5574 -1.7518 42 1 -0.8707 3.5398 -0.4148 43 1 2.6275 4.7118 -0.4837 44 1 1.4810 3.5396 0.2174 45 1 3.5691 6.8014 -4.8124 46 1 2.1486 0.9742 2.5214 47 1 3.4591 -0.2345 2.3137 48 1 5.1733 1.3610 2.8826 49 1 3.8524 1.8631 3.9841 50 1 4.9486 2.7011 0.3889 51 1 3.3063 3.3960 0.3295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039806480.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:45 Heat of formation + Delta-G solvation = -56.664934 kcal Electronic energy + Delta-G solvation = -33660.689982 eV Core-core repulsion = 29562.582026 eV Total energy + Delta-G solvation = -4098.107956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.18765 -39.36578 -38.12803 -36.92385 -34.16368 -33.09874 -32.74073 -31.93623 -30.43771 -29.79859 -27.58914 -26.96868 -25.90626 -25.18228 -23.49592 -22.84871 -21.70638 -21.48055 -20.79753 -19.33746 -18.42214 -17.74269 -17.03229 -16.56413 -16.09910 -15.85698 -15.29134 -15.13224 -14.83381 -14.76536 -14.54947 -14.14054 -13.99284 -13.71331 -13.30848 -13.17792 -13.04858 -12.78621 -12.55543 -12.40686 -12.18251 -12.07116 -11.80823 -11.59318 -11.44986 -11.36240 -11.16545 -11.12448 -10.92188 -10.77000 -10.61094 -10.49771 -10.38580 -10.22600 -10.12352 -10.08689 -9.66552 -9.60390 -9.40887 -8.89662 -8.67527 -7.83401 -6.62386 -5.90843 -3.36611 2.84735 3.23718 3.31859 3.40080 3.41465 3.65285 3.88258 4.37615 4.44936 4.58429 4.67316 4.84939 4.90518 5.03088 5.11853 5.15312 5.23806 5.25671 5.35889 5.49721 5.52452 5.58930 5.60290 5.62184 5.64801 5.66987 5.69377 5.74366 5.76637 5.90060 5.95204 6.06836 6.19953 6.22724 6.34640 6.44267 6.48646 6.59417 6.69135 6.73099 6.77220 6.79383 6.87104 6.97478 7.05651 7.23804 7.50541 7.71506 7.92312 8.32300 8.54716 9.07322 9.68050 10.31582 11.17529 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.004514 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.681841 B = 6201.215600 C = 7062.935769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.357 6.357 3 C 0.080 3.920 4 H 0.086 0.914 5 C 0.487 3.513 6 O -0.536 6.536 7 N -0.587 5.587 8 C 0.106 3.894 9 C 0.183 3.817 10 H 0.109 0.891 11 C -0.130 4.130 12 C -0.139 4.139 13 C -0.125 4.125 14 C 0.154 3.846 15 H 0.081 0.919 16 C 0.083 3.917 17 N -0.576 5.576 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.010 3.990 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C -0.112 4.112 27 H 0.096 0.904 28 C -0.139 4.139 29 C 0.043 3.957 30 O -0.372 6.372 31 C 0.027 3.973 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.031 0.969 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.256 0.744 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.060 0.940 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -10.068 11.734 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.274 6.274 3 C 0.018 3.982 4 H 0.104 0.896 5 C 0.274 3.726 6 O -0.413 6.413 7 N -0.322 5.322 8 C -0.017 4.017 9 C 0.076 3.924 10 H 0.127 0.873 11 C -0.169 4.169 12 C -0.177 4.177 13 C -0.165 4.165 14 C 0.045 3.955 15 H 0.099 0.901 16 C -0.041 4.041 17 N -0.297 5.297 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.189 4.189 21 N -0.542 5.542 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.131 4.131 27 H 0.114 0.886 28 C -0.177 4.177 29 C -0.034 4.034 30 O -0.291 6.291 31 C -0.050 4.050 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.078 0.922 49 H 0.111 0.889 50 H 0.083 0.917 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.799 -10.372 11.212 15.379 hybrid contribution -0.284 0.877 -0.578 1.088 sum -2.082 -9.494 10.634 14.407 Atomic orbital electron populations 1.22933 0.80766 1.03062 1.00431 1.87959 1.19805 1.25103 1.94569 1.22222 0.96109 0.86532 0.93318 0.89632 1.20837 0.77932 0.82728 0.91066 1.90681 1.49085 1.52598 1.48935 1.48397 1.65553 1.05180 1.13044 1.22346 1.01043 0.97807 0.80495 1.21005 0.89184 0.87295 0.94884 0.87297 1.22065 1.00462 0.98621 0.95796 1.22120 1.00935 0.97732 0.96952 1.21997 0.99346 0.97616 0.97497 1.21237 0.90775 0.93994 0.89457 0.90097 1.22659 1.00237 0.91705 0.89508 1.44295 1.79839 1.01970 1.03598 1.19084 1.13689 0.82825 1.22718 0.91756 1.25088 0.94799 0.97612 1.01409 1.69924 1.13570 1.36809 1.33865 0.86296 0.77744 0.84342 0.78316 1.21367 1.21584 1.20535 1.22512 0.95405 0.98495 0.96675 0.88567 1.23096 1.00891 1.00597 0.93090 1.23597 0.98533 0.84241 0.97012 1.88908 1.94845 1.27959 1.17385 1.23785 1.01812 0.95795 0.83579 0.89274 0.93872 0.93428 0.89436 0.91091 0.93580 0.92904 0.94993 0.89848 0.92252 0.93871 0.90423 0.91273 0.93435 0.90303 0.89684 0.92199 0.88878 0.91686 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.81 101.05 1.09 1.38 16 2 O -0.36 -5.19 9.75 -53.03 -0.52 -5.71 16 3 C 0.08 1.14 1.57 -27.88 -0.04 1.10 16 4 H 0.09 1.12 5.39 -51.93 -0.28 0.84 16 5 C 0.49 8.69 3.75 -10.99 -0.04 8.65 16 6 O -0.54 -11.46 16.10 -12.25 -0.20 -11.66 16 7 N -0.59 -10.67 1.47 -172.19 -0.25 -10.92 16 8 C 0.11 2.22 5.83 -3.44 -0.02 2.20 16 9 C 0.18 4.04 2.61 -66.80 -0.17 3.87 16 10 H 0.11 2.73 6.20 -51.93 -0.32 2.41 16 11 C -0.13 -2.58 5.58 -26.54 -0.15 -2.73 16 12 C -0.14 -2.48 5.09 -26.72 -0.14 -2.61 16 13 C -0.13 -2.09 5.59 -26.54 -0.15 -2.24 16 14 C 0.15 2.85 3.61 -66.85 -0.24 2.61 16 15 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 16 C 0.08 1.40 3.70 -3.49 -0.01 1.38 16 17 N -0.58 -12.92 2.51 -155.38 -0.39 -13.32 16 18 C -0.25 -6.37 9.71 -15.06 -0.15 -6.51 16 19 H 0.06 1.61 7.87 -52.49 -0.41 1.19 16 20 C 0.01 0.27 5.02 -17.43 -0.09 0.18 16 21 N -0.90 -23.71 10.65 55.49 0.59 -23.12 16 22 Si 0.90 20.57 29.58 -169.99 -5.03 15.54 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.11 -1.44 2.82 -89.09 -0.25 -1.69 16 27 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 28 C -0.14 -1.40 6.42 -24.72 -0.16 -1.56 16 29 C 0.04 0.42 7.72 38.21 0.29 0.72 16 30 O -0.37 -5.01 11.52 -35.23 -0.41 -5.41 16 31 C 0.03 0.36 6.99 37.73 0.26 0.63 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.05 0.62 7.34 -51.93 -0.38 0.24 16 35 H 0.09 2.05 7.54 -51.93 -0.39 1.66 16 36 H 0.07 1.53 6.98 -51.93 -0.36 1.17 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.51 2.17 -52.42 -0.11 1.40 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.40 7.15 -51.93 -0.37 1.02 16 44 H 0.07 0.97 4.78 -51.93 -0.25 0.72 16 45 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 46 H 0.08 0.76 7.87 -51.92 -0.41 0.35 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.11 1.63 2.54 -51.93 -0.13 1.50 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -29.02 369.54 -8.64 -37.66 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.05 Total: 6.00 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 0.04 Total: 5.37 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.05 Total: -47.36 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -1.12 Total: -22.78 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.02 -8.64 -37.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039806480.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.007 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds