Wall clock time and date at job start Tue Mar 31 2020 21:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 H 1.08995 * 115.54871 * 34.13521 * 5 3 2 7 7 C 1.52999 * 117.49844 * 248.46973 * 5 3 2 8 8 C 1.52996 * 117.49546 * 179.81078 * 5 3 2 9 9 H 1.08995 * 117.50529 * 359.97438 * 8 5 3 10 10 C 1.53008 * 117.49622 * 215.00101 * 8 5 3 11 11 C 1.53176 * 109.54374 * 179.82587 * 10 8 5 12 12 C 1.53100 * 109.15715 * 183.24130 * 11 10 8 13 13 O 1.42905 * 109.48941 * 57.46838 * 12 11 10 14 14 C 1.42906 * 114.09892 * 298.89438 * 13 12 11 15 15 C 1.53092 * 109.41626 * 61.15266 * 14 13 12 16 16 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 17 17 H 1.09004 * 110.64081 * 180.69781 * 16 2 1 18 18 C 1.54327 * 110.72125 * 303.83602 * 16 2 1 19 19 N 1.47324 * 107.11687 * 140.42895 * 18 16 2 20 20 C 1.36934 * 125.61125 * 181.10893 * 19 18 16 21 21 H 1.08001 * 120.00403 * 0.20656 * 20 19 18 22 22 C 1.38807 * 120.00099 * 180.20540 * 20 19 18 23 23 N 1.31622 * 120.00017 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00361 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47273 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47317 * 119.99884 * 24 22 20 27 27 H 1.48499 * 109.47357 * 239.99738 * 24 22 20 28 28 C 1.47424 * 108.73879 * 1.30587 * 19 18 16 29 29 C 1.54913 * 104.83121 * 335.71431 * 28 19 18 30 30 H 1.09004 * 111.00247 * 278.93979 * 29 28 19 31 31 O 1.42895 * 111.03755 * 155.09750 * 29 28 19 32 32 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 33 33 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 34 34 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 35 35 H 1.09007 * 117.49732 * 359.97438 * 7 5 3 36 36 H 1.08998 * 117.49972 * 145.01907 * 7 5 3 37 37 H 1.09001 * 109.54202 * 300.00052 * 10 8 5 38 38 H 1.09000 * 109.51679 * 303.05516 * 11 10 8 39 39 H 1.08998 * 109.52549 * 63.24364 * 11 10 8 40 40 H 1.09003 * 109.40385 * 297.49248 * 12 11 10 41 41 H 1.08998 * 109.48672 * 177.50235 * 12 11 10 42 42 H 1.08995 * 109.47793 * 301.17053 * 14 13 12 43 43 H 1.08999 * 109.47833 * 181.13375 * 14 13 12 44 44 H 1.09002 * 109.52121 * 182.48301 * 15 14 13 45 45 H 1.09001 * 109.52168 * 62.30127 * 15 14 13 46 46 H 1.08996 * 109.88543 * 259.98065 * 18 16 2 47 47 H 1.08997 * 109.87663 * 21.14336 * 18 16 2 48 48 H 0.96994 * 120.00405 * 180.02562 * 23 22 20 49 49 H 1.08997 * 110.36672 * 216.87944 * 28 19 18 50 50 H 1.09002 * 110.36545 * 94.55217 * 28 19 18 51 51 H 0.96700 * 113.99786 * 67.78200 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 1 0.4480 2.4711 0.5622 7 6 1.4583 3.3362 -1.2542 8 6 2.2077 3.7626 0.0106 9 1 3.2935 3.6675 0.0091 10 6 1.6509 4.9526 0.7947 11 6 2.6145 6.1377 0.6803 12 6 2.0899 7.2959 1.5332 13 8 1.9441 6.8630 2.8872 14 6 1.0180 5.7884 3.0597 15 6 1.5006 4.5689 2.2700 16 6 2.1974 -1.2688 -0.0006 17 1 3.2729 -1.0916 0.0119 18 6 1.7743 -2.1440 1.1980 19 7 1.7029 -3.5343 0.7159 20 6 1.3409 -4.6209 1.4664 21 1 1.0735 -4.4949 2.5052 22 6 1.3174 -5.8844 0.8921 23 7 1.6427 -6.0380 -0.3740 24 14 0.8228 -7.3667 1.9157 25 1 0.5056 -6.9295 3.2990 26 1 -0.3729 -8.0082 1.3124 27 1 1.9431 -8.3409 1.9496 28 6 2.0901 -3.5628 -0.7064 29 6 1.7977 -2.1329 -1.2257 30 1 0.7404 -2.0114 -1.4611 31 8 2.6111 -1.8224 -2.3588 32 1 -0.3633 0.0002 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3632 0.8900 0.5139 35 1 2.0516 2.9608 -2.0881 36 1 0.5688 3.9037 -1.5275 37 1 0.6784 5.2329 0.3901 38 1 3.6005 5.8412 1.0378 39 1 2.6830 6.4523 -0.3610 40 1 1.1225 7.6195 1.1489 41 1 2.7943 8.1267 1.4910 42 1 0.0367 6.0922 2.6954 43 1 0.9504 5.5331 4.1172 44 1 0.7733 3.7626 2.3645 45 1 2.4635 4.2397 2.6607 46 1 2.5126 -2.0623 1.9957 47 1 0.7966 -1.8275 1.5612 48 1 1.6259 -6.9208 -0.7754 49 1 1.4896 -4.2934 -1.2484 50 1 3.1508 -3.7932 -0.8062 51 1 2.3981 -2.3377 -3.1488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047456909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:03 Heat of formation + Delta-G solvation = -75.498170 kcal Electronic energy + Delta-G solvation = -30419.843512 eV Core-core repulsion = 26320.918886 eV Total energy + Delta-G solvation = -4098.924626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.44651 -39.55051 -38.13245 -36.71376 -35.20249 -34.73413 -33.20231 -31.90790 -31.41316 -28.79790 -27.38411 -26.73276 -25.95423 -24.80345 -23.99684 -23.34935 -21.45593 -20.49150 -20.41450 -19.90719 -18.69476 -17.62276 -17.10636 -16.73788 -16.30811 -16.20552 -15.89670 -15.35399 -15.09417 -14.87796 -14.70139 -14.23257 -14.09766 -13.85583 -13.65707 -13.31270 -13.09765 -12.80757 -12.73726 -12.62511 -12.25966 -12.14780 -12.07413 -11.72516 -11.65744 -11.51944 -11.39495 -11.25603 -11.16524 -10.97727 -10.87741 -10.81612 -10.41810 -10.18416 -10.14079 -9.96247 -9.78580 -9.73659 -9.65808 -9.24031 -8.75992 -8.33919 -6.96498 -5.75401 -3.18934 2.61057 3.06892 3.34279 3.40113 3.42534 3.56839 3.66533 4.18727 4.38763 4.42493 4.47268 4.62279 4.64512 4.71663 4.77313 4.87443 4.90166 4.98604 5.06981 5.18386 5.24025 5.32534 5.33728 5.36556 5.38381 5.45989 5.50297 5.52321 5.58002 5.63941 5.65226 5.74756 5.79122 5.82356 5.86068 5.88806 5.97366 6.08232 6.16128 6.18098 6.45528 6.59892 6.88092 6.91168 7.31869 7.48475 7.60675 7.70023 8.13783 8.24443 8.37951 9.09646 9.69963 10.32575 11.28327 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.002317 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.008612 B =12083.655154 C =12916.021165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.597 5.597 3 C 0.543 3.457 4 O -0.540 6.540 5 C -0.184 4.184 6 H 0.123 0.877 7 C -0.146 4.146 8 C -0.114 4.114 9 H 0.118 0.882 10 C -0.057 4.057 11 C -0.149 4.149 12 C 0.061 3.939 13 O -0.384 6.384 14 C 0.061 3.939 15 C -0.151 4.151 16 C 0.136 3.864 17 H 0.111 0.889 18 C 0.130 3.870 19 N -0.599 5.599 20 C -0.223 4.223 21 H 0.081 0.919 22 C -0.010 4.010 23 N -0.922 5.922 24 Si 0.918 3.082 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.129 3.871 29 C 0.065 3.935 30 H 0.059 0.941 31 O -0.564 6.564 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.032 0.968 47 H 0.034 0.966 48 H 0.253 0.747 49 H 0.112 0.888 50 H 0.024 0.976 51 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.283 23.725 -0.964 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.328 5.328 3 C 0.331 3.669 4 O -0.418 6.418 5 C -0.205 4.205 6 H 0.140 0.860 7 C -0.183 4.183 8 C -0.133 4.133 9 H 0.136 0.864 10 C -0.076 4.076 11 C -0.186 4.186 12 C -0.016 4.016 13 O -0.303 6.303 14 C -0.016 4.016 15 C -0.189 4.189 16 C 0.032 3.968 17 H 0.128 0.872 18 C 0.003 3.997 19 N -0.327 5.327 20 C -0.351 4.351 21 H 0.099 0.901 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.748 3.252 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.003 3.997 29 C 0.004 3.996 30 H 0.077 0.923 31 O -0.368 6.368 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.129 0.871 50 H 0.042 0.958 51 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.303 23.991 -0.389 24.377 hybrid contribution -0.779 -1.562 -0.151 1.752 sum -5.082 22.429 -0.540 23.004 Atomic orbital electron populations 1.21833 0.79831 1.03364 1.01887 1.47685 1.06851 1.05674 1.72609 1.19570 0.87307 0.84212 0.75784 1.90681 1.13879 1.87116 1.50086 1.22299 1.02303 0.90582 1.05279 0.85951 1.23070 1.02709 1.01176 0.91380 1.22406 0.99454 0.92409 0.99018 0.86366 1.20795 0.98647 0.93347 0.94785 1.22221 1.00074 0.95506 1.00832 1.22583 1.00403 0.96292 0.82345 1.87941 1.63938 1.52017 1.26427 1.22603 0.91634 0.86552 1.00809 1.22235 1.03255 0.98369 0.94994 1.22144 0.98167 0.81534 0.94912 0.87155 1.21613 0.98371 0.85894 0.93842 1.44364 1.79658 1.01076 1.07622 1.19133 1.37923 0.84641 0.93449 0.90141 1.24817 1.01678 0.97566 0.96535 1.69763 1.54641 1.21707 1.10982 0.85954 0.77754 0.82509 0.78994 1.20445 1.21665 1.21643 1.22557 0.99540 0.91788 0.85787 1.23713 0.92886 0.97570 0.85385 0.92300 1.86447 1.62111 1.66030 1.22196 0.92680 0.89976 0.91262 0.88163 0.87981 0.90925 0.90651 0.90569 0.93331 0.88888 0.93311 0.88823 0.90724 0.90540 0.94993 0.94812 0.93610 0.87066 0.95762 0.77957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 9.01 59.85 0.54 1.45 16 2 N -0.60 -9.56 2.88 -171.83 -0.50 -10.06 16 3 C 0.54 8.73 7.46 -10.98 -0.08 8.65 16 4 O -0.54 -10.84 15.63 5.55 0.09 -10.75 16 5 C -0.18 -2.05 4.54 -91.77 -0.42 -2.47 16 6 H 0.12 1.10 5.95 -51.93 -0.31 0.79 16 7 C -0.15 -1.38 9.88 -26.69 -0.26 -1.65 16 8 C -0.11 -1.16 4.67 -90.58 -0.42 -1.58 16 9 H 0.12 1.46 7.64 -51.93 -0.40 1.07 16 10 C -0.06 -0.45 2.42 -90.44 -0.22 -0.67 16 11 C -0.15 -1.11 5.41 -26.59 -0.14 -1.25 16 12 C 0.06 0.44 6.84 37.21 0.25 0.69 16 13 O -0.38 -3.70 10.77 -35.23 -0.38 -4.08 16 14 C 0.06 0.47 6.84 37.20 0.25 0.73 16 15 C -0.15 -1.26 5.22 -26.60 -0.14 -1.40 16 16 C 0.14 2.66 3.09 -66.09 -0.20 2.46 16 17 H 0.11 2.46 6.99 -51.93 -0.36 2.10 16 18 C 0.13 2.74 6.82 -2.90 -0.02 2.72 16 19 N -0.60 -15.12 3.40 -169.83 -0.58 -15.70 16 20 C -0.22 -6.08 10.28 -15.06 -0.15 -6.24 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -26.22 10.09 55.49 0.56 -25.66 16 24 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 C 0.13 3.11 5.62 -2.53 -0.01 3.09 16 29 C 0.07 1.29 3.99 -24.58 -0.10 1.19 16 30 H 0.06 1.10 7.19 -51.93 -0.37 0.72 16 31 O -0.56 -10.57 13.47 -35.23 -0.47 -11.05 16 32 H 0.05 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.08 1.09 6.26 -51.93 -0.33 0.77 16 34 H 0.07 0.64 5.99 -51.93 -0.31 0.33 16 35 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.58 7.43 -51.93 -0.39 0.20 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.03 0.67 6.12 -51.93 -0.32 0.35 16 48 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 49 H 0.11 2.92 5.87 -51.93 -0.31 2.62 16 50 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.37 5.40 9.12 45.56 0.42 5.81 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -33.45 394.85 -9.27 -42.72 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.69 Total: 6.70 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -1.22 Total: 5.34 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.51 Total: -51.42 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.77 Total: -25.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.45 -9.27 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047456909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.777 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds