Wall clock time and date at job start Tue Mar 31 2020 21:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00339 * 2 1 4 4 O 1.21284 * 120.00377 * 186.38153 * 3 2 1 5 5 C 1.50708 * 119.99701 * 6.38590 * 3 2 1 6 6 C 1.52999 * 109.61306 * 300.22979 * 5 3 2 7 7 C 1.52991 * 117.50146 * 355.97593 * 6 5 3 8 8 C 1.53001 * 117.50023 * 287.31196 * 6 5 3 9 9 C 1.53173 * 109.54323 * 60.45613 * 5 3 2 10 10 C 1.53095 * 109.21979 * 62.85303 * 9 5 3 11 11 O 1.43030 * 109.34021 * 57.57758 * 10 9 5 12 12 C 1.42904 * 114.13530 * 298.87926 * 11 10 9 13 13 C 1.53096 * 109.41098 * 61.16480 * 12 11 10 14 14 C 1.46503 * 119.99989 * 180.02562 * 2 1 3 15 15 H 1.09009 * 110.64152 * 183.14277 * 14 2 1 16 16 C 1.54329 * 110.71513 * 306.47287 * 14 2 1 17 17 N 1.47028 * 107.26468 * 140.56112 * 16 14 2 18 18 C 1.36942 * 125.64418 * 181.02729 * 17 16 14 19 19 H 1.08003 * 119.99862 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99760 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00326 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00170 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46977 * 89.99638 * 22 20 18 24 24 H 1.48497 * 109.47644 * 210.00429 * 22 20 18 25 25 H 1.48508 * 109.46845 * 330.00182 * 22 20 18 26 26 C 1.47417 * 108.70816 * 1.05661 * 17 16 14 27 27 C 1.54916 * 104.83027 * 335.87245 * 26 17 16 28 28 H 1.08993 * 111.04000 * 278.91872 * 27 26 17 29 29 O 1.42901 * 111.00257 * 155.07806 * 27 26 17 30 30 H 1.09001 * 109.47136 * 96.61692 * 1 2 3 31 31 H 1.08994 * 109.47071 * 216.61644 * 1 2 3 32 32 H 1.09003 * 109.46708 * 336.61741 * 1 2 3 33 33 H 1.08999 * 115.54451 * 141.64187 * 6 5 3 34 34 H 1.09003 * 117.50165 * 359.97438 * 7 6 5 35 35 H 1.09000 * 117.50535 * 145.01940 * 7 6 5 36 36 H 1.08996 * 117.49591 * 214.98155 * 8 6 5 37 37 H 1.09001 * 117.49693 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.52150 * 182.79268 * 9 5 3 39 39 H 1.09006 * 109.52057 * 302.91452 * 9 5 3 40 40 H 1.09000 * 109.48290 * 177.62492 * 10 9 5 41 41 H 1.08999 * 109.47711 * 297.65815 * 10 9 5 42 42 H 1.08994 * 109.48178 * 301.18532 * 12 11 10 43 43 H 1.08995 * 109.49341 * 181.14775 * 12 11 10 44 44 H 1.09005 * 109.52328 * 182.48580 * 13 12 11 45 45 H 1.08993 * 109.57776 * 62.32730 * 13 12 11 46 46 H 1.08995 * 109.88449 * 259.97285 * 16 14 2 47 47 H 1.08997 * 109.88075 * 21.14642 * 16 14 2 48 48 H 0.97007 * 120.00227 * 179.97438 * 21 20 18 49 49 H 1.09003 * 110.36858 * 217.03906 * 26 17 16 50 50 H 1.08994 * 110.36631 * 94.70934 * 26 17 16 51 51 H 0.96707 * 113.99829 * 67.80738 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3461 1.1704 -0.1167 5 6 1.3924 2.4683 0.1452 6 6 0.3916 2.6170 -1.0025 7 6 0.3922 1.5358 -2.0849 8 6 0.9514 2.9272 -2.3922 9 6 0.6451 2.4838 1.4821 10 6 1.6589 2.4130 2.6271 11 8 2.5714 3.5093 2.5202 12 6 3.3326 3.5201 1.3109 13 6 2.3849 3.6347 0.1141 14 6 2.1975 -1.2688 -0.0006 15 1 3.2717 -1.0923 0.0554 16 6 1.7273 -2.1711 1.1598 17 7 1.6778 -3.5488 0.6488 18 6 1.2886 -4.6511 1.3621 19 1 0.9829 -4.5470 2.3928 20 6 1.2871 -5.9020 0.7606 21 7 1.6592 -6.0287 -0.4955 22 14 0.7569 -7.4058 1.7338 23 1 -0.7067 -7.6044 1.5796 24 1 1.4751 -8.6024 1.2264 25 1 1.0808 -7.2058 3.1692 26 6 2.1171 -3.5472 -0.7584 27 6 1.8435 -2.1065 -1.2576 28 1 0.7958 -1.9790 -1.5298 29 8 2.6987 -1.7728 -2.3528 30 1 -0.3633 -0.1184 -1.0208 31 1 -0.3633 -0.8248 0.6129 32 1 -0.3633 0.9433 0.4079 33 1 -0.5672 3.0612 -0.7354 34 1 1.1059 0.7186 -1.9798 35 1 -0.5661 1.2689 -2.5304 36 1 0.3606 3.5752 -3.0396 37 1 2.0327 3.0250 -2.4889 38 1 0.0657 3.4034 1.5649 39 1 -0.0247 1.6254 1.5350 40 1 1.1343 2.4663 3.5810 41 1 2.2100 1.4745 2.5671 42 1 3.9056 2.5961 1.2337 43 1 4.0139 4.3709 1.3176 44 1 2.9603 3.5987 -0.8110 45 1 1.8407 4.5774 0.1681 46 1 2.4332 -2.1081 1.9879 47 1 0.7357 -1.8626 1.4909 48 1 1.6584 -6.9030 -0.9158 49 1 1.5374 -4.2659 -1.3377 50 1 3.1808 -3.7758 -0.8239 51 1 2.5152 -2.2711 -3.1611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047471265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:00 Heat of formation + Delta-G solvation = -38.355329 kcal Electronic energy + Delta-G solvation = -32864.287373 eV Core-core repulsion = 28766.973381 eV Total energy + Delta-G solvation = -4097.313992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.61309 -38.78498 -37.65552 -37.12161 -35.25959 -34.77592 -33.17735 -31.94549 -31.07763 -28.72028 -27.39342 -27.01272 -25.89844 -24.42305 -23.81577 -22.76737 -21.82780 -21.21614 -20.48977 -19.60795 -18.64684 -17.22455 -17.02849 -16.83219 -16.22307 -16.09750 -15.85784 -15.55955 -15.14716 -14.87172 -14.57880 -14.07538 -13.94870 -13.63621 -13.38243 -13.29274 -13.21140 -12.93576 -12.66024 -12.31558 -12.23085 -12.07967 -11.74757 -11.65986 -11.56605 -11.46891 -11.25405 -11.17547 -11.09707 -10.97783 -10.86453 -10.53280 -10.39910 -10.19776 -10.11246 -9.96582 -9.75195 -9.54435 -9.42591 -9.12006 -8.76646 -8.31485 -6.97469 -5.76384 -3.20070 2.70342 3.07496 3.33674 3.39336 3.41286 3.57258 3.82860 4.22237 4.37382 4.44672 4.53975 4.63536 4.74825 4.79910 4.89377 4.99910 5.06199 5.13537 5.21749 5.29748 5.37456 5.45080 5.45470 5.48504 5.54078 5.56893 5.61117 5.64068 5.67253 5.75420 5.76936 5.80062 5.86905 5.91882 5.99672 6.02758 6.06768 6.09104 6.12729 6.17392 6.44336 6.56760 6.89187 7.15405 7.30670 7.47141 7.57460 7.68652 8.12748 8.23249 8.31762 9.08458 9.69171 10.31361 11.27098 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.003580 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.507817 B = 7819.071890 C = 8499.587356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.594 5.594 3 C 0.527 3.473 4 O -0.535 6.535 5 C -0.047 4.047 6 C -0.148 4.148 7 C -0.184 4.184 8 C -0.177 4.177 9 C -0.155 4.155 10 C 0.059 3.941 11 O -0.385 6.385 12 C 0.047 3.953 13 C -0.124 4.124 14 C 0.136 3.864 15 H 0.109 0.891 16 C 0.130 3.870 17 N -0.598 5.598 18 C -0.226 4.226 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.917 3.083 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.281 1.281 26 C 0.129 3.871 27 C 0.065 3.935 28 H 0.059 0.941 29 O -0.562 6.562 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.030 0.970 47 H 0.035 0.965 48 H 0.254 0.746 49 H 0.111 0.889 50 H 0.024 0.976 51 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 18.773 -1.609 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.325 5.325 3 C 0.315 3.685 4 O -0.411 6.411 5 C -0.050 4.050 6 C -0.166 4.166 7 C -0.221 4.221 8 C -0.214 4.214 9 C -0.193 4.193 10 C -0.018 4.018 11 O -0.304 6.304 12 C -0.029 4.029 13 C -0.161 4.161 14 C 0.032 3.968 15 H 0.127 0.873 16 C 0.003 3.997 17 N -0.326 5.326 18 C -0.354 4.354 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.747 3.253 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.003 3.997 27 C 0.005 3.995 28 H 0.077 0.923 29 O -0.367 6.367 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.048 0.952 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.129 0.871 50 H 0.042 0.958 51 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.251 19.087 -1.099 19.586 hybrid contribution -0.682 -1.468 -0.238 1.636 sum -4.933 17.620 -1.338 18.346 Atomic orbital electron populations 1.22590 0.80056 1.03892 1.02992 1.47761 1.06852 1.05552 1.72381 1.20319 0.87596 0.84907 0.75719 1.90645 1.14331 1.86888 1.49277 1.20419 0.95507 0.93570 0.95494 1.22267 0.99728 1.05463 0.89141 1.23562 1.03632 0.93251 1.01672 1.23072 1.01381 0.99563 0.97410 1.22644 0.99010 1.04387 0.93218 1.22589 0.90691 0.90184 0.98350 1.87899 1.54864 1.47982 1.39656 1.22870 0.93250 1.03636 0.83139 1.22008 0.97257 0.96613 1.00272 1.22142 0.97980 0.81687 0.94963 0.87276 1.21555 0.98259 0.85986 0.93912 1.44258 1.77994 1.01193 1.09107 1.19077 1.37083 0.84517 0.94679 0.90220 1.24799 1.01438 0.97600 0.96547 1.69756 1.53624 1.22561 1.11074 0.86040 0.78045 0.82269 0.78931 1.21500 1.21562 1.20633 1.22552 0.99092 0.91598 0.86439 1.23702 0.92285 0.97496 0.86054 0.92339 1.86461 1.60730 1.66582 1.22890 0.91593 0.90625 0.89217 0.86854 0.86779 0.88531 0.88777 0.88667 0.89818 0.88705 0.88527 0.93041 0.90467 0.89204 0.90151 0.90638 0.95207 0.94770 0.93567 0.87141 0.95812 0.78016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 7.07 59.85 0.42 0.98 16 2 N -0.59 -8.87 1.91 -171.83 -0.33 -9.19 16 3 C 0.53 7.92 3.82 -10.98 -0.04 7.88 16 4 O -0.53 -9.96 13.24 5.55 0.07 -9.88 16 5 C -0.05 -0.53 0.38 -155.47 -0.06 -0.59 16 6 C -0.15 -1.42 3.97 -90.62 -0.36 -1.78 16 7 C -0.18 -1.99 6.55 -26.70 -0.17 -2.17 16 8 C -0.18 -1.76 9.67 -26.69 -0.26 -2.02 16 9 C -0.16 -1.53 4.53 -26.59 -0.12 -1.66 16 10 C 0.06 0.68 6.63 37.21 0.25 0.93 16 11 O -0.39 -5.08 10.77 -35.23 -0.38 -5.46 16 12 C 0.05 0.60 6.56 37.21 0.24 0.84 16 13 C -0.12 -1.40 4.17 -26.59 -0.11 -1.51 16 14 C 0.14 2.53 3.08 -66.09 -0.20 2.33 16 15 H 0.11 2.33 7.03 -51.92 -0.36 1.97 16 16 C 0.13 2.65 6.84 -3.06 -0.02 2.62 16 17 N -0.60 -14.75 3.39 -170.07 -0.58 -15.33 16 18 C -0.23 -6.05 10.27 -15.06 -0.15 -6.21 16 19 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -25.93 10.09 55.49 0.56 -25.37 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.13 3.05 5.62 -2.53 -0.01 3.03 16 27 C 0.07 1.25 4.00 -24.58 -0.10 1.15 16 28 H 0.06 1.06 7.12 -51.93 -0.37 0.69 16 29 O -0.56 -10.24 13.47 -35.23 -0.47 -10.71 16 30 H 0.07 0.75 5.40 -51.93 -0.28 0.47 16 31 H 0.08 0.97 6.05 -51.93 -0.31 0.65 16 32 H 0.09 0.85 3.04 -51.93 -0.16 0.69 16 33 H 0.11 0.88 8.01 -51.93 -0.42 0.46 16 34 H 0.11 1.61 5.21 -51.93 -0.27 1.34 16 35 H 0.10 0.90 7.96 -51.93 -0.41 0.48 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.08 6.90 -51.93 -0.36 0.72 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.86 4.86 -51.93 -0.25 0.61 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.70 7.38 -51.93 -0.38 0.32 16 42 H 0.08 1.17 5.80 -51.93 -0.30 0.87 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.96 6.68 -51.93 -0.35 0.61 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.03 0.65 5.87 -51.93 -0.30 0.35 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 50 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.37 5.29 9.12 45.56 0.42 5.70 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -31.75 367.81 -8.33 -40.08 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.93 Total: 10.44 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.80 Total: 3.51 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.34 Total: -49.89 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.78 Total: -26.05 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.75 -8.33 -40.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047471265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.723 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds