Wall clock time and date at job start Tue Mar 31 2020 21:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 119.99793 * 2 1 4 4 O 1.21280 * 119.99929 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00425 * 359.97438 * 3 2 1 6 6 C 1.53867 * 113.60294 * 279.18182 * 5 3 2 7 7 C 1.53470 * 86.88711 * 220.36310 * 6 5 3 8 8 C 1.53319 * 87.58210 * 25.10833 * 7 6 5 9 9 C 1.52822 * 113.69833 * 139.90160 * 7 6 5 10 10 C 1.53267 * 108.88385 * 184.07716 * 9 7 6 11 11 O 1.42895 * 109.32739 * 304.69210 * 10 9 7 12 12 C 1.42894 * 114.36167 * 62.99061 * 11 10 9 13 13 C 1.52836 * 113.56532 * 270.33716 * 7 6 5 14 14 C 1.46494 * 119.99957 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.88730 * 183.88626 * 14 2 1 16 16 C 1.54915 * 111.00409 * 307.80437 * 14 2 1 17 17 N 1.47428 * 104.83102 * 155.08482 * 16 14 2 18 18 C 1.36932 * 125.64995 * 155.91173 * 17 16 14 19 19 H 1.08009 * 119.99968 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00375 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99804 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00331 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46960 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47160 * 119.99758 * 22 20 18 25 25 H 1.48496 * 109.47126 * 239.99832 * 22 20 18 26 26 C 1.47486 * 108.75727 * 335.89255 * 17 16 14 27 27 C 1.54323 * 107.03754 * 1.02624 * 26 17 16 28 28 H 1.09002 * 110.72057 * 263.78860 * 27 26 17 29 29 O 1.42895 * 110.72028 * 140.69212 * 27 26 17 30 30 H 1.09003 * 109.47146 * 270.00630 * 1 2 3 31 31 H 1.08999 * 109.46804 * 29.99935 * 1 2 3 32 32 H 1.09000 * 109.46915 * 150.00612 * 1 2 3 33 33 H 1.09004 * 112.83717 * 50.33280 * 5 3 2 34 34 H 1.09002 * 113.63688 * 334.85262 * 6 5 3 35 35 H 1.09004 * 113.63575 * 105.81669 * 6 5 3 36 36 H 1.08999 * 113.64215 * 220.37668 * 8 7 6 37 37 H 1.09004 * 113.63513 * 89.40134 * 8 7 6 38 38 H 1.09003 * 109.56898 * 303.89996 * 9 7 6 39 39 H 1.09004 * 109.57045 * 64.25648 * 9 7 6 40 40 H 1.08995 * 109.49899 * 184.73595 * 10 9 7 41 41 H 1.09004 * 109.51694 * 64.66372 * 10 9 7 42 42 H 1.09002 * 109.49947 * 177.05444 * 12 11 10 43 43 H 1.09000 * 109.51931 * 56.97800 * 12 11 10 44 44 H 1.08991 * 109.57136 * 295.67673 * 13 7 6 45 45 H 1.09006 * 109.56518 * 56.04042 * 13 7 6 46 46 H 1.09000 * 110.36497 * 273.91911 * 16 14 2 47 47 H 1.08996 * 110.36659 * 36.13367 * 16 14 2 48 48 H 0.97005 * 120.00149 * 180.02562 * 21 20 18 49 49 H 1.09000 * 110.02886 * 241.65974 * 26 17 16 50 50 H 1.09005 * 109.96368 * 120.34831 * 26 17 16 51 51 H 0.96702 * 113.99988 * 63.84342 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4724 -0.0006 6 6 0.8831 2.8931 -1.3928 7 6 1.2884 4.3242 -1.0144 8 6 2.2980 3.7105 -0.0372 9 6 1.9384 5.1013 -2.1585 10 6 2.3891 6.4697 -1.6355 11 8 1.2739 7.1419 -1.0469 12 6 0.7225 6.4812 0.0938 13 6 0.1741 5.1135 -0.3280 14 6 2.1975 -1.2687 0.0006 15 1 3.2718 -1.0972 0.0695 16 6 1.7074 -2.1923 1.1437 17 7 2.0265 -3.5578 0.6885 18 6 2.2161 -4.6452 1.4989 19 1 2.1342 -4.5408 2.5708 20 6 2.5135 -5.8818 0.9428 21 7 2.6127 -6.0092 -0.3635 22 14 2.7714 -7.3654 2.0482 23 1 2.6044 -6.9604 3.4671 24 1 1.7735 -8.4125 1.7121 25 1 4.1406 -7.9027 1.8441 26 6 2.1075 -3.5601 -0.7841 27 6 1.8484 -2.1130 -1.2534 28 1 0.8027 -1.9786 -1.5300 29 8 2.7057 -1.7745 -2.3454 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5137 33 1 0.6183 2.5183 0.7724 34 1 1.4675 2.4757 -2.2128 35 1 -0.1907 2.7632 -1.5276 36 1 2.3593 4.2365 0.9155 37 1 3.2753 3.5201 -0.4808 38 1 2.8020 4.5499 -2.5301 39 1 1.2163 5.2380 -2.9636 40 1 2.7779 7.0649 -2.4616 41 1 3.1691 6.3342 -0.8861 42 1 -0.0849 7.0846 0.5087 43 1 1.4989 6.3453 0.8467 44 1 -0.6561 5.2509 -1.0207 45 1 -0.1690 4.5703 0.5527 46 1 2.2391 -1.9666 2.0680 47 1 0.6329 -2.0800 1.2878 48 1 2.8202 -6.8734 -0.7522 49 1 1.3501 -4.2255 -1.1986 50 1 3.0996 -3.8808 -1.1018 51 1 2.5535 -2.3004 -3.1426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047593817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:56 Heat of formation + Delta-G solvation = -78.738551 kcal Electronic energy + Delta-G solvation = -30923.460670 eV Core-core repulsion = 26824.395530 eV Total energy + Delta-G solvation = -4099.065140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.25065 -39.54334 -38.05525 -36.99145 -35.20277 -34.73415 -32.03341 -31.57310 -31.24681 -28.67417 -27.41692 -26.74731 -26.20557 -25.34590 -24.20230 -23.96806 -22.33215 -20.45388 -20.16269 -18.81435 -18.46222 -17.44462 -17.08437 -16.60235 -16.34656 -16.30964 -15.83054 -15.56331 -15.06048 -14.84704 -14.64289 -14.22343 -14.14197 -13.96841 -13.59869 -13.14262 -12.98518 -12.77990 -12.66518 -12.55403 -12.34923 -12.19939 -11.95382 -11.94308 -11.75457 -11.61526 -11.41164 -11.37356 -11.22329 -10.88637 -10.82480 -10.76554 -10.65148 -10.26990 -10.13956 -9.97483 -9.84760 -9.74542 -9.47216 -9.22604 -8.73980 -8.33154 -6.94830 -5.79094 -3.14311 2.77771 3.13981 3.36395 3.42077 3.44475 3.57804 4.09493 4.24003 4.26588 4.42366 4.48548 4.60447 4.68964 4.71494 4.81871 4.91624 5.06814 5.11582 5.15809 5.18146 5.24290 5.30478 5.37165 5.38451 5.45150 5.48358 5.54911 5.56631 5.60855 5.63643 5.65333 5.73664 5.74224 5.77029 5.88142 5.89769 6.03875 6.06700 6.10686 6.22573 6.47104 6.60732 6.88995 6.90380 7.32237 7.44893 7.61808 7.70909 8.13259 8.18409 8.39470 9.10900 9.71571 10.34694 11.32471 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.031337 B = 0.002304 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.310137 B =12150.304957 C =12420.422920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.523 3.477 4 O -0.538 6.538 5 C -0.133 4.133 6 C -0.110 4.110 7 C -0.084 4.084 8 C -0.107 4.107 9 C -0.138 4.138 10 C 0.062 3.938 11 O -0.385 6.385 12 C 0.062 3.938 13 C -0.131 4.131 14 C 0.133 3.867 15 H 0.113 0.887 16 C 0.133 3.867 17 N -0.600 5.600 18 C -0.229 4.229 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.153 3.847 27 C 0.064 3.936 28 H 0.054 0.946 29 O -0.561 6.561 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.026 0.974 48 H 0.253 0.747 49 H 0.048 0.952 50 H 0.060 0.940 51 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 22.930 -3.035 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.332 5.332 3 C 0.311 3.689 4 O -0.414 6.414 5 C -0.154 4.154 6 C -0.148 4.148 7 C -0.084 4.084 8 C -0.145 4.145 9 C -0.176 4.176 10 C -0.015 4.015 11 O -0.304 6.304 12 C -0.015 4.015 13 C -0.168 4.168 14 C 0.029 3.971 15 H 0.131 0.869 16 C 0.006 3.994 17 N -0.328 5.328 18 C -0.357 4.357 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.746 3.254 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.028 3.972 27 C 0.004 3.996 28 H 0.072 0.928 29 O -0.365 6.365 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.704 23.298 -2.683 24.392 hybrid contribution -0.190 -1.808 0.229 1.832 sum -6.894 21.491 -2.454 22.702 Atomic orbital electron populations 1.21798 0.80053 1.03062 1.01859 1.47737 1.06703 1.05914 1.72846 1.20410 0.87872 0.84875 0.75737 1.90682 1.13998 1.87137 1.49603 1.22733 0.99897 0.92699 1.00083 1.22926 1.01413 0.94843 0.95595 1.21553 0.96427 0.94112 0.96346 1.22901 0.98240 0.93872 0.99487 1.22107 1.01287 0.96425 0.97760 1.22597 0.88219 0.93056 0.97628 1.87883 1.48191 1.48949 1.45382 1.22588 0.97945 0.93073 0.87905 1.21980 0.97586 0.96235 1.01045 1.22374 0.98490 0.81456 0.94761 0.86882 1.21750 0.97342 0.85520 0.94813 1.44358 1.83322 1.03238 1.01863 1.19118 1.41387 0.85806 0.89424 0.90105 1.24829 1.01663 0.97792 0.96096 1.69944 1.54865 1.23428 1.08749 0.85994 0.77492 0.82559 0.79402 1.20422 1.21697 1.21634 1.21921 1.01873 0.89148 0.84281 1.23570 0.92003 0.97361 0.86661 0.92791 1.86502 1.62259 1.63697 1.24073 0.92474 0.91210 0.90715 0.87196 0.89295 0.90585 0.91155 0.88444 0.90440 0.90932 0.88990 0.93001 0.88926 0.93043 0.90655 0.90533 0.93465 0.95694 0.93665 0.93396 0.92161 0.78058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 8.74 59.85 0.52 1.38 16 2 N -0.60 -9.27 2.91 -171.48 -0.50 -9.76 16 3 C 0.52 8.14 7.20 -10.98 -0.08 8.06 16 4 O -0.54 -10.65 15.29 5.56 0.08 -10.57 16 5 C -0.13 -1.41 2.45 -90.88 -0.22 -1.63 16 6 C -0.11 -0.99 6.00 -26.04 -0.16 -1.15 16 7 C -0.08 -0.69 0.77 -154.28 -0.12 -0.81 16 8 C -0.11 -1.08 6.35 -26.12 -0.17 -1.25 16 9 C -0.14 -1.11 5.33 -26.68 -0.14 -1.25 16 10 C 0.06 0.49 6.78 37.30 0.25 0.74 16 11 O -0.39 -3.60 10.72 -35.23 -0.38 -3.98 16 12 C 0.06 0.45 6.78 37.30 0.25 0.70 16 13 C -0.13 -0.90 5.23 -26.67 -0.14 -1.04 16 14 C 0.13 2.59 3.18 -65.78 -0.21 2.38 16 15 H 0.11 2.58 7.02 -51.93 -0.36 2.21 16 16 C 0.13 2.77 6.79 -2.52 -0.02 2.75 16 17 N -0.60 -15.25 3.41 -169.69 -0.58 -15.83 16 18 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 19 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.75 10.31 55.49 0.57 -26.17 16 22 Si 0.92 21.95 29.55 -169.99 -5.02 16.92 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.15 3.68 5.17 -2.81 -0.01 3.66 16 27 C 0.06 1.25 3.88 -24.90 -0.10 1.15 16 28 H 0.05 0.94 6.40 -51.93 -0.33 0.61 16 29 O -0.56 -10.55 13.39 -35.23 -0.47 -11.02 16 30 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.07 0.61 5.66 -51.93 -0.29 0.31 16 32 H 0.07 0.89 6.41 -51.93 -0.33 0.56 16 33 H 0.11 0.95 7.42 -51.93 -0.39 0.57 16 34 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 35 H 0.08 0.57 7.57 -51.93 -0.39 0.17 16 36 H 0.07 0.64 7.63 -51.93 -0.40 0.25 16 37 H 0.10 1.18 7.32 -51.93 -0.38 0.80 16 38 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.36 7.68 -51.93 -0.40 -0.04 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.46 7.35 -51.93 -0.38 0.08 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.03 0.49 7.00 -51.93 -0.36 0.12 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 50 H 0.06 1.64 7.31 -51.93 -0.38 1.26 16 51 H 0.37 5.43 9.12 45.56 0.42 5.84 16 LS Contribution 387.86 15.07 5.85 5.85 Total: -1.00 -34.06 387.86 -8.74 -42.80 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.71 Total: 4.88 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.58 Total: 6.89 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.50 Total: -51.76 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.76 Total: -25.57 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.06 -8.74 -42.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047593817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.935 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds