Wall clock time and date at job start Tue Mar 31 2020 21:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00274 * 2 1 4 4 H 1.08996 * 109.52072 * 330.13068 * 3 2 1 5 5 C 1.53094 * 109.57159 * 90.28511 * 3 2 1 6 6 O 1.42899 * 109.41372 * 177.54904 * 5 3 2 7 7 C 1.42905 * 114.09924 * 298.84193 * 6 5 3 8 8 C 1.53093 * 109.41330 * 61.15664 * 7 6 5 9 9 C 1.53173 * 109.16553 * 302.39469 * 8 7 6 10 10 H 1.09002 * 109.61700 * 297.06472 * 9 8 7 11 11 C 1.52998 * 109.54552 * 176.84826 * 9 8 7 12 12 C 1.50704 * 109.47073 * 65.44134 * 11 9 8 13 13 O 1.21277 * 120.00384 * 0.02562 * 12 11 9 14 14 N 1.34783 * 119.99899 * 180.02562 * 12 11 9 15 15 C 1.46653 * 125.33576 * 180.02562 * 14 12 11 16 16 C 1.53675 * 107.97297 * 179.29108 * 15 14 12 17 17 H 1.08997 * 113.31933 * 106.32940 * 16 15 14 18 18 C 1.53985 * 109.29370 * 233.06072 * 16 15 14 19 19 N 1.46756 * 106.67695 * 82.34171 * 18 16 15 20 20 C 1.36940 * 125.33256 * 198.42568 * 19 18 16 21 21 H 1.08002 * 119.99922 * 170.01264 * 20 19 18 22 22 C 1.38811 * 120.00224 * 350.01310 * 20 19 18 23 23 N 1.31624 * 119.99844 * 350.53855 * 22 20 19 24 24 Si 1.86797 * 120.00140 * 170.53798 * 22 20 19 25 25 H 1.48506 * 109.46919 * 94.62891 * 24 22 20 26 26 H 1.48499 * 109.47359 * 214.62788 * 24 22 20 27 27 H 1.48499 * 109.47185 * 334.63376 * 24 22 20 28 28 C 1.46662 * 109.33188 * 18.45108 * 19 18 16 29 29 C 1.53672 * 107.97015 * 359.28615 * 28 19 18 30 30 H 1.08999 * 112.77330 * 106.01742 * 29 28 19 31 31 C 1.46753 * 125.33282 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.46850 * 299.99750 * 1 2 3 33 33 H 1.09007 * 109.47138 * 59.99542 * 1 2 3 34 34 H 1.08996 * 109.47397 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.48008 * 297.53246 * 5 3 2 36 36 H 1.09000 * 109.47783 * 57.55379 * 5 3 2 37 37 H 1.08999 * 109.48419 * 181.14088 * 7 6 5 38 38 H 1.09007 * 109.47963 * 301.16595 * 7 6 5 39 39 H 1.09006 * 109.52226 * 182.48700 * 8 7 6 40 40 H 1.09005 * 109.52028 * 62.30364 * 8 7 6 41 41 H 1.08999 * 109.47384 * 305.44351 * 11 9 8 42 42 H 1.09001 * 109.47619 * 185.44594 * 11 9 8 43 43 H 1.09007 * 109.76722 * 59.65910 * 15 14 12 44 44 H 1.09003 * 109.76657 * 298.92408 * 15 14 12 45 45 H 1.08996 * 110.01902 * 323.03449 * 18 16 15 46 46 H 1.09003 * 110.05149 * 201.66939 * 18 16 15 47 47 H 0.97000 * 119.99934 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.75936 * 239.66037 * 28 19 18 49 49 H 1.08999 * 109.76982 * 118.92227 * 28 19 18 50 50 H 1.09005 * 110.01891 * 79.14710 * 31 14 12 51 51 H 1.08995 * 110.02441 * 317.75659 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3446 2.0006 -0.5116 5 6 2.2255 1.7711 1.4425 6 8 2.8589 3.0520 1.4387 7 6 4.1463 3.0644 0.8185 8 6 4.0083 2.6508 -0.6490 9 6 3.3606 1.2646 -0.7219 10 1 4.0090 0.5320 -0.2414 11 6 3.1466 0.8760 -2.1862 12 6 4.4831 0.7165 -2.8640 13 8 5.5060 0.8954 -2.2376 14 7 4.5416 0.3749 -4.1666 15 6 5.7735 0.1882 -4.9400 16 6 5.3793 -0.2118 -6.3705 17 1 5.5216 0.5882 -7.0969 18 6 6.1158 -1.5075 -6.7577 19 7 5.3399 -2.6178 -6.1929 20 6 5.8077 -3.8889 -5.9911 21 1 5.2210 -4.5967 -5.4243 22 6 7.0360 -4.2678 -6.5152 23 7 7.6647 -3.4756 -7.3576 24 14 7.7966 -5.9019 -6.0250 25 1 7.4394 -6.9354 -7.0298 26 1 9.2737 -5.7617 -5.9628 27 1 7.2814 -6.3079 -4.6927 28 6 3.9848 -2.1529 -5.8789 29 6 3.8974 -0.6635 -6.2471 30 1 3.3213 -0.4865 -7.1553 31 6 3.3824 0.1305 -5.0327 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.2628 1.8431 1.9486 36 1 2.8583 1.0539 1.9653 37 1 4.5675 4.0682 0.8752 38 1 4.8046 2.3644 1.3333 39 1 4.9945 2.6169 -1.1122 40 1 3.3830 3.3731 -1.1737 41 1 2.5749 1.6559 -2.6893 42 1 2.5992 -0.0652 -2.2361 43 1 6.3758 -0.6007 -4.4893 44 1 6.3406 1.1189 -4.9604 45 1 7.1219 -1.5043 -6.3386 46 1 6.1641 -1.6000 -7.8427 47 1 8.5232 -3.7401 -7.7235 48 1 3.7883 -2.2817 -4.8145 49 1 3.2568 -2.7196 -6.4595 50 1 2.9554 1.0782 -5.3610 51 1 2.6324 -0.4514 -4.4972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048855744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:18 Heat of formation + Delta-G solvation = -100.151624 kcal Electronic energy + Delta-G solvation = -31070.805359 eV Core-core repulsion = 26970.811678 eV Total energy + Delta-G solvation = -4099.993680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.56804 -39.80031 -38.17809 -37.53602 -34.97688 -34.29924 -32.26926 -30.70542 -30.42318 -29.73643 -28.83296 -26.89939 -25.61942 -25.49444 -23.81127 -23.33184 -22.55146 -20.50364 -20.11836 -19.40124 -19.02289 -17.40387 -17.02119 -16.64149 -16.54529 -16.22845 -15.78647 -15.54786 -15.40195 -14.82875 -14.75606 -14.62563 -14.01499 -13.73043 -13.52282 -13.35083 -13.07877 -12.88412 -12.81501 -12.63105 -12.32215 -12.09406 -11.95389 -11.88688 -11.65775 -11.51417 -11.35413 -11.15519 -10.94216 -10.87938 -10.81852 -10.66093 -10.40815 -10.29906 -10.10151 -9.99669 -9.95718 -9.71515 -9.67445 -9.32066 -8.59983 -8.31413 -6.80820 -5.76593 -3.09079 2.83035 3.19850 3.27774 3.39555 3.45956 3.48121 3.78802 4.35870 4.42876 4.48246 4.55213 4.71790 4.76414 4.81978 4.91804 4.99995 5.05578 5.10647 5.11413 5.22433 5.24053 5.32441 5.38095 5.44606 5.44848 5.47637 5.49195 5.56797 5.63924 5.69796 5.73016 5.77662 5.83870 5.92217 6.05276 6.09945 6.13893 6.29328 6.36529 6.57408 6.64571 6.71547 6.71797 6.81068 7.03067 7.41707 7.55321 7.75913 7.78735 8.24912 8.38374 9.19200 9.80674 10.45668 11.36415 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.002734 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.089537 B =10237.846375 C =10462.531035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.060 3.940 4 H 0.070 0.930 5 C 0.043 3.957 6 O -0.381 6.381 7 C 0.058 3.942 8 C -0.153 4.153 9 C -0.069 4.069 10 H 0.090 0.910 11 C -0.128 4.128 12 C 0.527 3.473 13 O -0.544 6.544 14 N -0.607 5.607 15 C 0.122 3.878 16 C -0.124 4.124 17 H 0.089 0.911 18 C 0.185 3.815 19 N -0.598 5.598 20 C -0.230 4.230 21 H 0.075 0.925 22 C -0.005 4.005 23 N -0.918 5.918 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.144 3.856 29 C -0.109 4.109 30 H 0.098 0.902 31 C 0.111 3.889 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.036 0.964 47 H 0.253 0.747 48 H 0.022 0.978 49 H 0.022 0.978 50 H 0.062 0.938 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.512 14.095 11.390 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.002 3.998 4 H 0.088 0.912 5 C -0.034 4.034 6 O -0.300 6.300 7 C -0.018 4.018 8 C -0.190 4.190 9 C -0.088 4.088 10 H 0.108 0.892 11 C -0.168 4.168 12 C 0.316 3.684 13 O -0.423 6.423 14 N -0.340 5.340 15 C 0.000 4.000 16 C -0.144 4.144 17 H 0.107 0.893 18 C 0.059 3.941 19 N -0.324 5.324 20 C -0.359 4.359 21 H 0.093 0.907 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.018 3.982 29 C -0.128 4.128 30 H 0.116 0.884 31 C -0.013 4.013 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.040 0.960 50 H 0.080 0.920 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.751 14.077 11.832 22.962 hybrid contribution 0.212 -1.006 -0.116 1.035 sum -13.539 13.071 11.716 22.168 Atomic orbital electron populations 1.22840 0.80966 1.03010 0.99981 1.87966 1.19693 1.26893 1.94943 1.22848 0.95353 0.85156 0.96441 0.91218 1.22991 0.98514 0.85861 0.96080 1.87924 1.32749 1.29896 1.79395 1.22672 0.84480 1.02343 0.92314 1.22402 1.03753 0.95306 0.97578 1.21036 0.94919 0.98610 0.94274 0.89190 1.21628 0.95583 1.04126 0.95445 1.20195 0.91405 0.76601 0.80191 1.90646 1.36749 1.51461 1.63416 1.48282 1.08555 1.67858 1.09352 1.21849 0.86514 1.00740 0.90938 1.23194 0.95614 1.00560 0.95064 0.89292 1.21072 0.94275 0.81543 0.97185 1.44170 1.06369 1.07567 1.74339 1.18989 1.02024 0.87287 1.27552 0.90686 1.24811 0.98472 0.98458 0.98465 1.69954 1.16604 1.37213 1.32713 0.86137 0.78631 0.83099 0.78118 1.21604 1.21568 1.20592 1.21144 0.89199 0.90608 0.97246 1.22830 0.96730 0.96533 0.96736 0.88418 1.21984 0.88655 0.98993 0.91634 0.94101 0.93833 0.89375 0.88979 0.92157 0.88588 0.92694 0.87995 0.91495 0.89422 0.88128 0.90448 0.92481 0.92053 0.94583 0.93677 0.95986 0.95970 0.92013 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.91 9.74 -35.23 -0.34 -4.26 16 3 C 0.06 0.59 2.21 -26.59 -0.06 0.53 16 4 H 0.07 0.61 7.79 -51.93 -0.40 0.21 16 5 C 0.04 0.41 6.47 37.21 0.24 0.65 16 6 O -0.38 -4.10 10.77 -35.23 -0.38 -4.48 16 7 C 0.06 0.58 6.84 37.21 0.25 0.83 16 8 C -0.15 -1.65 5.13 -26.59 -0.14 -1.78 16 9 C -0.07 -0.79 1.64 -90.44 -0.15 -0.94 16 10 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 11 C -0.13 -1.49 4.16 -27.88 -0.12 -1.61 16 12 C 0.53 8.24 7.58 -10.98 -0.08 8.16 16 13 O -0.54 -10.19 14.31 5.56 0.08 -10.11 16 14 N -0.61 -9.56 3.31 -172.35 -0.57 -10.13 16 15 C 0.12 2.17 6.24 -3.61 -0.02 2.15 16 16 C -0.12 -2.17 4.09 -88.47 -0.36 -2.53 16 17 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 18 C 0.18 4.29 4.55 -3.39 -0.02 4.28 16 19 N -0.60 -14.96 3.38 -171.88 -0.58 -15.54 16 20 C -0.23 -6.41 10.21 -15.06 -0.15 -6.57 16 21 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 22 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 23 N -0.92 -26.70 10.62 55.49 0.59 -26.11 16 24 Si 0.91 22.23 29.56 -169.99 -5.03 17.21 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.14 2.88 6.62 -3.60 -0.02 2.86 16 29 C -0.11 -1.70 4.09 -88.49 -0.36 -2.06 16 30 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 31 C 0.11 1.44 5.77 -3.41 -0.02 1.42 16 32 H 0.04 0.24 7.96 -51.93 -0.41 -0.17 16 33 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.72 7.96 -51.93 -0.41 0.31 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.10 1.31 6.07 -51.93 -0.32 0.99 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.17 7.38 -51.93 -0.38 0.79 16 43 H 0.08 1.68 7.47 -51.92 -0.39 1.29 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 1.61 6.87 -51.93 -0.36 1.25 16 46 H 0.04 0.92 7.80 -51.93 -0.41 0.51 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.46 7.47 -51.93 -0.39 0.07 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -32.65 390.60 -9.22 -41.87 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.87 Total: -0.77 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.01 Total: 6.44 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.56 Total: -51.79 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.64 Total: -18.85 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.65 -9.22 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048855744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.280 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds