Wall clock time and date at job start Tue Mar 31 2020 21:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99917 * 2 1 4 4 H 1.08999 * 109.57540 * 330.16002 * 3 2 1 5 5 C 1.53094 * 109.51881 * 90.31857 * 3 2 1 6 6 O 1.42906 * 109.41707 * 62.29774 * 5 3 2 7 7 C 1.42901 * 114.09898 * 61.15447 * 6 5 3 8 8 C 1.53092 * 109.41444 * 298.84329 * 7 6 5 9 9 C 1.53170 * 109.52169 * 210.00143 * 3 2 1 10 10 H 1.09002 * 109.61800 * 177.16655 * 9 3 2 11 11 C 1.53006 * 109.54616 * 56.94551 * 9 3 2 12 12 C 1.50697 * 109.47253 * 175.44544 * 11 9 3 13 13 O 1.21278 * 120.00179 * 359.97438 * 12 11 9 14 14 N 1.34775 * 119.99998 * 180.02562 * 12 11 9 15 15 C 1.46783 * 125.33607 * 359.96961 * 14 12 11 16 16 C 1.53974 * 106.62389 * 198.54199 * 15 14 12 17 17 H 1.09001 * 113.01296 * 94.28475 * 16 15 14 18 18 C 1.53933 * 109.24486 * 221.81060 * 16 15 14 19 19 N 1.46043 * 107.07549 * 82.51680 * 18 16 15 20 20 C 1.36936 * 125.23292 * 198.01365 * 19 18 16 21 21 H 1.08005 * 120.00106 * 169.33608 * 20 19 18 22 22 C 1.38816 * 120.00069 * 349.32497 * 20 19 18 23 23 N 1.31616 * 119.99905 * 350.59707 * 22 20 19 24 24 Si 1.86796 * 120.00007 * 170.58777 * 22 20 19 25 25 H 1.48501 * 109.47215 * 94.63345 * 24 22 20 26 26 H 1.48498 * 109.47313 * 214.63452 * 24 22 20 27 27 H 1.48505 * 109.47106 * 334.63711 * 24 22 20 28 28 C 1.46639 * 109.43301 * 17.42361 * 19 18 16 29 29 C 1.53686 * 108.01089 * 359.75226 * 28 19 18 30 30 H 1.08997 * 112.56009 * 105.90293 * 29 28 19 31 31 C 1.46673 * 125.34186 * 179.97438 * 14 12 11 32 32 H 1.09003 * 109.47463 * 59.99348 * 1 2 3 33 33 H 1.08994 * 109.47385 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46932 * 300.00059 * 1 2 3 35 35 H 1.08996 * 109.48027 * 302.31182 * 5 3 2 36 36 H 1.09004 * 109.48612 * 182.28199 * 5 3 2 37 37 H 1.08997 * 109.47969 * 178.85956 * 7 6 5 38 38 H 1.08995 * 109.48040 * 58.82580 * 7 6 5 39 39 H 1.08997 * 109.52762 * 297.70202 * 8 7 6 40 40 H 1.09004 * 109.52049 * 177.51057 * 8 7 6 41 41 H 1.08999 * 109.46913 * 55.44393 * 11 9 3 42 42 H 1.09003 * 109.46831 * 295.44460 * 11 9 3 43 43 H 1.08997 * 110.02587 * 79.25132 * 15 14 12 44 44 H 1.09003 * 110.02708 * 317.83384 * 15 14 12 45 45 H 1.09004 * 110.00499 * 200.94636 * 18 16 15 46 46 H 1.08999 * 110.01262 * 322.31564 * 18 16 15 47 47 H 0.97004 * 120.00068 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.76079 * 240.10831 * 28 19 18 49 49 H 1.08995 * 109.75896 * 119.39064 * 28 19 18 50 50 H 1.09006 * 109.76637 * 59.81046 * 31 14 12 51 51 H 1.08996 * 109.76791 * 299.05713 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 -0.5110 5 6 2.2256 1.7695 1.4429 6 8 3.1434 0.8882 2.0934 7 6 4.4381 0.8451 1.4901 8 6 4.3116 0.3439 0.0491 9 6 3.3605 1.2646 -0.7219 10 1 3.7820 2.2688 -0.7669 11 6 3.1662 0.7270 -2.1411 12 6 4.4743 0.7921 -2.8865 13 8 5.4645 1.2262 -2.3369 14 7 4.5437 0.3688 -4.1641 15 6 3.4229 -0.1752 -4.9403 16 6 4.0386 -0.9413 -6.1255 17 1 4.1635 -2.0057 -5.9262 18 6 3.2266 -0.6437 -7.3989 19 7 3.7115 0.6276 -7.9294 20 6 3.0431 1.4147 -8.8288 21 1 3.3932 2.4153 -9.0354 22 6 1.9158 0.9264 -9.4751 23 7 1.5952 -0.3456 -9.3683 24 14 0.8539 2.0748 -10.4963 25 1 1.2746 2.0043 -11.9187 26 1 -0.5693 1.6671 -10.3803 27 1 1.0121 3.4661 -10.0018 28 6 5.0177 0.9362 -7.3388 29 6 5.3828 -0.2013 -6.3720 30 1 6.1575 -0.8563 -6.7706 31 6 5.7509 0.3795 -4.9971 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.2737 1.7596 1.9739 36 1 2.6312 2.7813 1.4428 37 1 5.0800 0.1693 2.0550 38 1 4.8727 1.8447 1.4904 39 1 3.9147 -0.6713 0.0500 40 1 5.2922 0.3523 -0.4269 41 1 2.4220 1.3313 -2.6598 42 1 2.8258 -0.3075 -2.0943 43 1 2.7939 0.6361 -5.3066 44 1 2.8352 -0.8538 -4.3220 45 1 3.3938 -1.4262 -8.1392 46 1 2.1656 -0.5784 -7.1579 47 1 0.8072 -0.6867 -9.8197 48 1 4.9625 1.8790 -6.7946 49 1 5.7697 1.0077 -8.1245 50 1 6.5242 -0.2330 -4.5333 51 1 6.1101 1.4021 -5.1126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048855745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:20 Heat of formation + Delta-G solvation = -118.944162 kcal Electronic energy + Delta-G solvation = -31071.442129 eV Core-core repulsion = 26970.633543 eV Total energy + Delta-G solvation = -4100.808586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.70680 -40.84166 -39.53761 -37.90945 -36.63180 -35.16087 -34.12642 -31.82951 -31.57673 -31.42295 -29.78570 -27.42023 -27.27822 -27.05020 -25.13295 -24.35509 -23.70114 -21.87648 -21.06566 -20.82237 -20.17640 -18.88633 -18.16801 -17.57280 -17.35577 -17.31420 -16.85535 -16.69631 -16.45937 -16.14772 -15.96150 -15.69897 -15.52523 -14.86395 -14.70727 -14.55781 -14.48705 -14.01751 -13.85420 -13.72814 -13.46025 -13.32884 -13.19540 -13.17179 -13.00510 -12.74597 -12.66949 -12.56792 -12.22298 -12.01787 -11.99670 -11.88995 -11.79016 -11.71156 -11.55632 -11.48535 -11.29186 -10.99067 -10.79589 -10.64704 -10.04411 -9.62692 -8.82725 -7.88000 -5.22490 1.47111 1.47575 1.57158 1.60553 2.00916 2.49622 2.73917 3.08585 3.25293 3.33887 3.53478 3.63891 3.68946 3.76910 3.82140 3.87673 3.94546 4.11347 4.25423 4.28070 4.32248 4.35949 4.41587 4.47413 4.50268 4.54812 4.55365 4.60538 4.64283 4.74508 4.75840 4.80509 4.85956 4.89327 4.93077 4.95186 5.01682 5.05281 5.17293 5.17778 5.24610 5.33552 5.36597 5.48546 5.58490 5.75835 6.14028 6.22577 6.40500 6.52500 7.12145 7.13574 7.79679 8.42138 9.22990 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.002819 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.436747 B = 9930.944655 C =11014.408087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.390 6.390 3 C 0.059 3.941 4 H 0.088 0.912 5 C 0.038 3.962 6 O -0.393 6.393 7 C 0.063 3.937 8 C -0.144 4.144 9 C -0.067 4.067 10 H 0.085 0.915 11 C -0.120 4.120 12 C 0.525 3.475 13 O -0.573 6.573 14 N -0.612 5.612 15 C 0.120 3.880 16 C -0.111 4.111 17 H 0.118 0.882 18 C 0.196 3.804 19 N -0.618 5.618 20 C -0.247 4.247 21 H 0.073 0.927 22 C -0.055 4.055 23 N -0.942 5.942 24 Si 0.972 3.028 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.272 1.272 28 C 0.140 3.860 29 C -0.095 4.095 30 H 0.118 0.882 31 C 0.124 3.876 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.004 0.996 46 H 0.031 0.969 47 H 0.249 0.751 48 H 0.019 0.981 49 H 0.023 0.977 50 H 0.078 0.922 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 0.590 20.569 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.309 6.309 3 C 0.001 3.999 4 H 0.106 0.894 5 C -0.039 4.039 6 O -0.312 6.312 7 C -0.014 4.014 8 C -0.181 4.181 9 C -0.085 4.085 10 H 0.103 0.897 11 C -0.159 4.159 12 C 0.316 3.684 13 O -0.454 6.454 14 N -0.345 5.345 15 C -0.003 4.003 16 C -0.131 4.131 17 H 0.136 0.864 18 C 0.070 3.930 19 N -0.344 5.344 20 C -0.376 4.376 21 H 0.091 0.909 22 C -0.249 4.249 23 N -0.590 5.590 24 Si 0.801 3.199 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.197 1.197 28 C 0.014 3.986 29 C -0.114 4.114 30 H 0.136 0.864 31 C 0.001 3.999 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.022 0.978 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.037 0.963 49 H 0.041 0.959 50 H 0.097 0.903 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.333 0.569 20.966 21.016 hybrid contribution -0.788 0.860 -1.478 1.883 sum 0.545 1.429 19.488 19.548 Atomic orbital electron populations 1.22959 0.80061 1.03597 1.00656 1.87952 1.20689 1.27186 1.95055 1.22869 0.94608 0.86055 0.96377 0.89445 1.23202 0.94543 0.93313 0.92825 1.87905 1.22931 1.66121 1.54279 1.22631 0.84484 1.01174 0.93102 1.22168 1.00487 0.99397 0.96082 1.21038 0.94586 1.00394 0.92532 0.89650 1.21602 0.94002 1.05091 0.95251 1.20779 0.91443 0.76257 0.79899 1.90618 1.39250 1.48063 1.67475 1.48439 1.11811 1.62408 1.11836 1.21993 0.88817 0.97272 0.92178 1.23138 0.94971 1.00207 0.94739 0.86431 1.20608 0.95433 0.86831 0.90081 1.44276 1.17829 1.23048 1.49250 1.19298 1.07236 0.95197 1.15845 0.90898 1.25561 1.00855 0.97403 1.01115 1.70138 1.27814 1.13053 1.47980 0.85169 0.77952 0.78461 0.78347 1.21512 1.21673 1.19740 1.21334 0.87292 0.95708 0.94235 1.22706 0.98190 0.96793 0.93760 0.86387 1.21717 0.87727 1.00889 0.89571 0.93292 0.89076 0.93116 0.87586 0.91024 0.88149 0.92648 0.91894 0.90581 0.88169 0.87571 0.92940 0.88867 0.97845 0.95044 0.94149 0.96324 0.95928 0.90347 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.39 -7.76 9.06 -141.82 -1.29 -9.04 16 3 C 0.06 1.03 2.43 30.68 0.07 1.11 16 4 H 0.09 1.22 7.79 -2.39 -0.02 1.21 16 5 C 0.04 0.63 6.49 72.01 0.47 1.10 16 6 O -0.39 -8.59 10.70 -141.82 -1.52 -10.10 16 7 C 0.06 1.24 6.84 72.01 0.49 1.73 16 8 C -0.14 -3.23 4.96 30.69 0.15 -3.07 16 9 C -0.07 -1.39 1.76 -10.67 -0.02 -1.41 16 10 H 0.09 1.86 7.96 -2.39 -0.02 1.84 16 11 C -0.12 -2.69 3.97 29.85 0.12 -2.57 16 12 C 0.53 15.04 7.57 87.66 0.66 15.71 16 13 O -0.57 -19.13 14.29 -3.02 -0.04 -19.17 16 14 N -0.61 -17.83 3.31 -817.36 -2.71 -20.54 16 15 C 0.12 3.56 5.88 86.65 0.51 4.07 16 16 C -0.11 -3.58 4.17 -9.32 -0.04 -3.62 16 17 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 18 C 0.20 8.85 4.49 86.78 0.39 9.24 16 19 N -0.62 -30.33 3.36 -699.64 -2.35 -32.68 16 20 C -0.25 -13.47 10.21 84.03 0.86 -12.61 16 21 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 22 C -0.06 -3.03 5.40 84.86 0.46 -2.57 16 23 N -0.94 -54.10 10.62 21.65 0.23 -53.87 16 24 Si 0.97 44.39 29.56 68.60 2.03 46.42 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 C 0.14 5.54 6.63 86.58 0.57 6.11 16 29 C -0.10 -2.94 3.98 -9.49 -0.04 -2.98 16 30 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 31 C 0.12 3.55 6.26 86.59 0.54 4.09 16 32 H 0.05 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 0.58 7.86 -2.38 -0.02 0.56 16 35 H 0.11 1.43 7.86 -2.39 -0.02 1.41 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.53 7.83 -2.39 -0.02 1.51 16 40 H 0.08 1.97 6.04 -2.38 -0.01 1.96 16 41 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.11 2.31 7.49 -2.39 -0.02 2.29 16 43 H 0.05 1.85 7.71 -2.39 -0.02 1.83 16 44 H 0.09 2.29 7.61 -2.39 -0.02 2.27 16 45 H 0.00 0.18 7.75 -2.38 -0.02 0.16 16 46 H 0.03 1.58 7.07 -2.39 -0.02 1.56 16 47 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 48 H 0.02 0.76 7.34 -2.39 -0.02 0.75 16 49 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 51 H 0.06 1.82 7.47 -2.39 -0.02 1.80 16 Total: -1.00 -67.97 389.38 1.69 -66.28 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.90 Total: 16.82 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.43 Total: 15.88 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -4.83 Total: -107.08 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -2.85 Total: -38.32 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -67.97 1.69 -66.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048855745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.662 kcal (2) G-P(sol) polarization free energy of solvation -67.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds