Wall clock time and date at job start Tue Mar 31 2020 21:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99838 * 2 1 4 4 H 1.09002 * 109.46958 * 30.00408 * 3 2 1 5 5 C 1.50697 * 109.47527 * 270.00267 * 3 2 1 6 6 O 1.21283 * 119.99849 * 355.00094 * 5 3 2 7 7 N 1.34774 * 120.00057 * 174.99988 * 5 3 2 8 8 C 1.47662 * 134.45489 * 180.02562 * 7 5 3 9 9 C 1.53514 * 85.97676 * 204.31711 * 8 7 5 10 10 C 1.47661 * 134.45814 * 0.02562 * 7 5 3 11 11 C 1.52672 * 113.57315 * 91.02059 * 9 8 7 12 12 C 1.53334 * 109.11254 * 73.80526 * 11 9 8 13 13 N 1.46886 * 108.76336 * 52.40830 * 12 11 9 14 14 C 1.36931 * 120.46817 * 124.44377 * 13 12 11 15 15 H 1.08002 * 119.99800 * 208.43585 * 14 13 12 16 16 C 1.38809 * 120.00225 * 28.43204 * 14 13 12 17 17 N 1.31626 * 119.99824 * 17.64795 * 16 14 13 18 18 Si 1.86799 * 120.00208 * 197.63902 * 16 14 13 19 19 H 1.48503 * 109.47114 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46931 * 120.00262 * 18 16 14 21 21 H 1.48498 * 109.47453 * 240.00528 * 18 16 14 22 22 C 1.46893 * 119.05864 * 304.46433 * 13 12 11 23 23 C 1.52674 * 113.55921 * 222.23346 * 9 8 7 24 24 C 1.53005 * 109.46660 * 150.00338 * 3 2 1 25 25 H 1.09000 * 110.45320 * 179.30219 * 24 3 2 26 26 C 1.54506 * 110.51051 * 301.90314 * 24 3 2 27 27 C 1.54482 * 104.05910 * 118.64724 * 26 24 3 28 28 O 1.44417 * 104.80578 * 23.97803 * 27 26 24 29 29 C 1.44648 * 105.36979 * 319.56540 * 28 27 26 30 30 H 1.09001 * 109.47552 * 59.99275 * 1 2 3 31 31 H 1.08996 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46915 * 299.99282 * 1 2 3 33 33 H 1.09002 * 113.79517 * 90.05041 * 8 7 5 34 34 H 1.09003 * 113.89848 * 318.59476 * 8 7 5 35 35 H 1.09001 * 113.79049 * 41.40840 * 10 7 5 36 36 H 1.08997 * 113.79211 * 269.95002 * 10 7 5 37 37 H 1.08998 * 109.53152 * 193.69967 * 11 9 8 38 38 H 1.09000 * 109.52880 * 313.91261 * 11 9 8 39 39 H 1.08994 * 109.58676 * 172.19209 * 12 11 9 40 40 H 1.08999 * 109.58954 * 292.62501 * 12 11 9 41 41 H 0.96998 * 119.99542 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.59525 * 295.75631 * 22 13 12 43 43 H 1.09006 * 109.58436 * 175.32932 * 22 13 12 44 44 H 1.08994 * 109.53475 * 46.08962 * 23 9 8 45 45 H 1.08999 * 109.53332 * 166.23837 * 23 9 8 46 46 H 1.09000 * 110.51209 * 237.28697 * 26 24 3 47 47 H 1.09002 * 110.51402 * 0.02562 * 26 24 3 48 48 H 1.09005 * 110.37474 * 142.81108 * 27 26 24 49 49 H 1.09003 * 110.37303 * 265.03533 * 27 26 24 50 50 H 1.08993 * 110.34139 * 281.59263 * 29 28 27 51 51 H 1.09004 * 110.50816 * 159.18232 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7645 -1.4207 6 8 1.9791 1.0108 -2.3413 7 7 2.6587 3.0126 -1.6684 8 6 2.9636 3.7776 -2.8941 9 6 3.8981 4.6147 -2.0094 10 6 3.0357 4.1630 -0.8229 11 6 5.3295 4.0860 -1.9618 12 6 6.0260 4.4020 -3.2908 13 7 5.8748 5.8353 -3.5743 14 6 6.9754 6.6186 -3.7982 15 1 6.9476 7.6707 -3.5559 16 6 8.1267 6.0605 -4.3365 17 7 8.0698 4.8964 -4.9482 18 14 9.7567 6.9616 -4.1931 19 1 9.5532 8.2401 -3.4656 20 1 10.7251 6.1174 -3.4483 21 1 10.2877 7.2434 -5.5510 22 6 4.5263 6.4164 -3.6138 23 6 3.8200 6.1140 -2.2867 24 6 3.3589 1.2632 0.7212 25 1 3.8227 2.2496 0.7198 26 6 3.1834 0.7495 2.1678 27 6 4.0312 -0.5411 2.2132 28 8 5.0102 -0.3766 1.1643 29 6 4.2932 0.2248 0.0614 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.1136 4.3354 -3.2871 34 1 3.4828 3.1990 -3.6581 35 1 3.6123 3.8891 0.0606 36 1 2.2072 4.8353 -0.6003 37 1 5.8683 4.5660 -1.1448 38 1 5.3145 3.0073 -1.8056 39 1 7.0847 4.1538 -3.2165 40 1 5.5675 3.8209 -4.0909 41 1 8.8743 4.5066 -5.3247 42 1 3.9626 5.9764 -4.4364 43 1 4.5973 7.4952 -3.7525 44 1 2.7756 6.4187 -2.3521 45 1 4.3090 6.6598 -1.4798 46 1 3.5628 1.4809 2.8815 47 1 2.1359 0.5253 2.3690 48 1 4.5241 -0.6376 3.1806 49 1 3.4063 -1.4126 2.0180 50 1 3.7096 -0.5289 -0.4671 51 1 4.9858 0.7173 -0.6212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050604252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:09 Heat of formation + Delta-G solvation = -62.576724 kcal Electronic energy + Delta-G solvation = -31756.464856 eV Core-core repulsion = 27658.100545 eV Total energy + Delta-G solvation = -4098.364310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.01257 -39.79785 -38.46501 -37.12822 -35.84491 -33.26289 -32.43779 -30.54617 -30.11421 -29.73641 -27.66121 -27.03426 -26.54235 -25.24534 -24.09792 -23.02042 -22.40945 -21.10667 -20.68794 -19.39322 -18.11804 -17.35455 -17.18070 -16.59373 -16.36092 -16.16248 -15.71767 -15.45212 -15.04577 -14.86813 -14.75740 -14.23940 -13.97132 -13.80262 -13.62569 -13.42333 -13.38105 -13.00172 -12.73418 -12.66004 -12.26419 -12.09376 -11.96893 -11.81259 -11.67683 -11.45145 -11.40899 -11.10416 -11.01291 -10.91626 -10.75377 -10.69292 -10.47441 -10.27808 -10.15805 -9.88018 -9.84113 -9.65553 -9.60008 -9.20061 -8.59149 -8.47565 -6.68435 -5.80285 -3.23452 2.55577 2.70798 3.36600 3.43143 3.44941 3.46557 3.86093 4.10045 4.35751 4.47926 4.49851 4.56963 4.64742 4.78668 4.92191 5.02628 5.06963 5.11089 5.15511 5.18669 5.23164 5.37312 5.42853 5.43294 5.44883 5.50534 5.52540 5.56674 5.58162 5.73870 5.78432 5.81203 5.91738 5.91980 6.03650 6.04322 6.23488 6.39739 6.54681 6.55886 6.63308 6.66857 6.72764 6.77790 6.91201 7.31462 7.64076 7.74960 7.78726 8.15824 8.44095 9.19706 9.83288 10.39187 11.27753 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.003194 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.147324 B = 8764.479962 C = 9702.467026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.088 3.912 4 H 0.086 0.914 5 C 0.509 3.491 6 O -0.528 6.528 7 N -0.636 5.636 8 C 0.117 3.883 9 C -0.072 4.072 10 C 0.095 3.905 11 C -0.116 4.116 12 C 0.172 3.828 13 N -0.590 5.590 14 C -0.254 4.254 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.900 5.900 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.146 3.854 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.104 0.896 26 C -0.143 4.143 27 C 0.048 3.952 28 O -0.374 6.374 29 C 0.053 3.947 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.061 0.939 50 H 0.075 0.925 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 -5.507 15.361 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.026 3.974 4 H 0.104 0.896 5 C 0.297 3.703 6 O -0.404 6.404 7 N -0.373 5.373 8 C -0.005 4.005 9 C -0.073 4.073 10 C -0.027 4.027 11 C -0.155 4.155 12 C 0.046 3.954 13 N -0.313 5.313 14 C -0.384 4.384 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.544 5.544 18 Si 0.730 3.270 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.218 1.218 22 C 0.020 3.980 23 C -0.159 4.159 24 C -0.137 4.137 25 H 0.122 0.878 26 C -0.181 4.181 27 C -0.029 4.029 28 O -0.292 6.292 29 C -0.024 4.024 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.911 -6.464 14.820 21.994 hybrid contribution 0.227 0.738 0.003 0.772 sum -14.685 -5.725 14.823 21.636 Atomic orbital electron populations 1.22863 0.80603 1.03249 0.99968 1.87977 1.19994 1.24769 1.94365 1.21897 0.96223 0.86697 0.92563 0.89628 1.20889 0.76907 0.80778 0.91718 1.90721 1.50411 1.53139 1.46166 1.50112 1.65216 1.10563 1.11401 1.23294 0.96842 0.90913 0.89459 1.21995 0.95786 0.96148 0.93321 1.23593 0.97391 0.85385 0.96357 1.21962 0.92450 0.98535 1.02561 1.20772 1.00645 0.84159 0.89826 1.44028 1.00340 1.05487 1.81439 1.19205 0.90637 0.93111 1.35438 0.91679 1.25051 0.99312 0.97624 0.97575 1.70042 1.27534 1.18907 1.37920 0.86262 0.84221 0.79150 0.77355 1.20264 1.21544 1.21766 1.20881 0.87177 0.97290 0.92696 1.21961 0.99509 0.93140 1.01323 1.22744 0.93538 1.02162 0.95251 0.87844 1.22916 1.01549 0.98198 0.95414 1.23350 0.90712 0.96824 0.92004 1.89162 1.32635 1.82527 1.24921 1.23482 0.94379 0.94637 0.89866 0.93648 0.89129 0.94042 0.90122 0.89659 0.90190 0.89819 0.91959 0.93141 0.89163 0.96393 0.93631 0.96393 0.92632 0.92764 0.91600 0.90389 0.90174 0.89350 0.92067 0.90689 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.81 101.05 1.09 1.36 16 2 O -0.35 -4.24 8.30 -55.09 -0.46 -4.70 16 3 C 0.09 0.99 1.91 -27.88 -0.05 0.94 16 4 H 0.09 0.76 7.79 -51.93 -0.40 0.35 16 5 C 0.51 7.51 6.80 -10.99 -0.07 7.44 16 6 O -0.53 -10.00 17.24 -14.30 -0.25 -10.25 16 7 N -0.64 -8.68 3.42 -180.25 -0.62 -9.30 16 8 C 0.12 1.74 7.62 -3.15 -0.02 1.71 16 9 C -0.07 -1.03 0.77 -154.42 -0.12 -1.15 16 10 C 0.10 1.06 7.42 -3.17 -0.02 1.04 16 11 C -0.12 -2.03 5.22 -26.73 -0.14 -2.17 16 12 C 0.17 3.91 5.22 -3.66 -0.02 3.89 16 13 N -0.59 -13.97 2.96 -172.21 -0.51 -14.48 16 14 C -0.25 -6.73 9.56 -15.06 -0.14 -6.87 16 15 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 16 C 0.00 0.09 4.89 -17.43 -0.09 0.00 16 17 N -0.90 -25.76 11.21 55.49 0.62 -25.13 16 18 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.15 2.80 6.39 -3.65 -0.02 2.78 16 23 C -0.12 -1.76 5.26 -26.72 -0.14 -1.90 16 24 C -0.12 -1.27 2.94 -89.05 -0.26 -1.53 16 25 H 0.10 1.06 5.65 -51.93 -0.29 0.76 16 26 C -0.14 -1.23 6.49 -25.16 -0.16 -1.39 16 27 C 0.05 0.48 7.64 37.94 0.29 0.77 16 28 O -0.37 -5.13 11.65 -35.23 -0.41 -5.54 16 29 C 0.05 0.71 6.55 37.93 0.25 0.96 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 33 H 0.08 1.08 8.07 -51.93 -0.42 0.67 16 34 H 0.09 1.49 7.41 -51.93 -0.38 1.10 16 35 H 0.08 0.79 5.96 -51.93 -0.31 0.48 16 36 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.86 8.01 -51.93 -0.42 0.45 16 39 H 0.09 2.36 5.98 -51.93 -0.31 2.05 16 40 H 0.02 0.44 7.49 -51.93 -0.39 0.05 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.02 0.35 8.07 -51.93 -0.42 -0.07 16 43 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 44 H 0.05 0.66 8.12 -51.93 -0.42 0.23 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.60 7.45 -51.93 -0.39 0.22 16 48 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 1.11 7.14 -51.93 -0.37 0.74 16 51 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -32.40 393.76 -9.06 -41.47 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.71 Total: -0.14 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 0.36 Total: 5.86 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.50 Total: -48.91 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.11 Total: -20.49 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.40 -9.06 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050604252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.111 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds