Wall clock time and date at job start Tue Mar 31 2020 21:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99883 * 2 1 4 4 H 1.08992 * 109.47615 * 30.00351 * 3 2 1 5 5 C 1.50707 * 109.47418 * 269.99776 * 3 2 1 6 6 O 1.21276 * 119.99930 * 161.77589 * 5 3 2 7 7 N 1.34771 * 119.99591 * 341.78180 * 5 3 2 8 8 C 1.47674 * 134.45293 * 185.10098 * 7 5 3 9 9 C 1.53517 * 85.98039 * 204.31747 * 8 7 5 10 10 C 1.47666 * 134.46365 * 5.10130 * 7 5 3 11 11 C 1.52662 * 113.57392 * 91.00180 * 9 8 7 12 12 C 1.53323 * 109.16675 * 188.86311 * 11 9 8 13 13 N 1.46890 * 108.76381 * 307.60027 * 12 11 9 14 14 C 1.36933 * 120.49465 * 235.58395 * 13 12 11 15 15 H 1.08000 * 120.00010 * 31.97095 * 14 13 12 16 16 C 1.38821 * 119.99654 * 211.96699 * 14 13 12 17 17 N 1.31614 * 120.00084 * 12.53169 * 16 14 13 18 18 Si 1.86798 * 119.99678 * 192.53600 * 16 14 13 19 19 H 1.48505 * 109.47289 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47234 * 120.00214 * 18 16 14 21 21 H 1.48496 * 109.47061 * 240.00302 * 18 16 14 22 22 C 1.46898 * 119.00591 * 55.60967 * 13 12 11 23 23 C 1.52666 * 113.56437 * 222.24653 * 9 8 7 24 24 C 1.53006 * 109.46683 * 150.00154 * 3 2 1 25 25 H 1.09001 * 110.43663 * 63.18044 * 24 3 2 26 26 C 1.54805 * 110.48939 * 300.49239 * 24 3 2 27 27 C 1.54996 * 102.09486 * 220.44440 * 26 24 3 28 28 O 1.44385 * 103.48688 * 37.02155 * 27 26 24 29 29 C 1.43739 * 106.97602 * 319.94008 * 28 27 26 30 30 H 1.09002 * 109.46931 * 299.99788 * 1 2 3 31 31 H 1.09010 * 109.46917 * 59.99443 * 1 2 3 32 32 H 1.08996 * 109.47415 * 179.97438 * 1 2 3 33 33 H 1.08995 * 113.78886 * 90.05464 * 8 7 5 34 34 H 1.08993 * 113.89791 * 318.59936 * 8 7 5 35 35 H 1.08996 * 113.79375 * 41.40934 * 10 7 5 36 36 H 1.09006 * 113.78686 * 269.94735 * 10 7 5 37 37 H 1.09005 * 109.52415 * 68.95351 * 11 9 8 38 38 H 1.09004 * 109.52320 * 308.76855 * 11 9 8 39 39 H 1.08998 * 109.59103 * 67.38257 * 12 11 9 40 40 H 1.08994 * 109.59029 * 187.81861 * 12 11 9 41 41 H 0.96999 * 119.99605 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.59429 * 64.16978 * 22 13 12 43 43 H 1.08998 * 109.58723 * 184.60720 * 22 13 12 44 44 H 1.08997 * 109.52552 * 51.22174 * 23 9 8 45 45 H 1.09006 * 109.52326 * 291.03359 * 23 9 8 46 46 H 1.09002 * 110.90728 * 338.64091 * 26 24 3 47 47 H 1.09003 * 110.90936 * 102.24139 * 26 24 3 48 48 H 1.08999 * 110.61743 * 278.52113 * 27 26 24 49 49 H 1.08996 * 110.61767 * 155.52177 * 27 26 24 50 50 H 1.09002 * 109.88067 * 267.08569 * 29 28 27 51 51 H 1.09004 * 110.00031 * 146.00737 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2146 1.7644 -1.4209 6 8 2.3793 2.9419 -1.6600 7 7 2.2142 0.8663 -2.4257 8 6 2.4711 0.9392 -3.8781 9 6 1.6021 -0.3217 -3.9857 10 6 1.9569 -0.5850 -2.5157 11 6 0.1220 -0.0256 -4.2139 12 6 -0.6776 -1.3274 -4.0846 13 7 -0.0778 -2.3396 -4.9640 14 6 -0.8362 -2.9748 -5.9109 15 1 -1.6558 -2.4546 -6.3843 16 6 -0.5514 -4.2872 -6.2622 17 7 0.2737 -5.0013 -5.5263 18 14 -1.3393 -5.0397 -7.7796 19 1 -2.2210 -4.0365 -8.4287 20 1 -0.2794 -5.4579 -8.7320 21 1 -2.1443 -6.2232 -7.3840 22 6 1.3476 -2.6607 -4.8121 23 6 2.1613 -1.3681 -4.9465 24 6 3.3589 1.2631 0.7213 25 1 4.0556 0.6162 0.1880 26 6 3.1777 0.7821 2.1815 27 6 4.1491 1.7117 2.9526 28 8 4.0222 2.9754 2.2659 29 6 3.9407 2.6833 0.8609 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.5146 0.7784 -4.1486 34 1 2.0367 1.8151 -4.3599 35 1 1.1128 -0.9201 -1.9130 36 1 2.8477 -1.1987 -2.3815 37 1 -0.0167 0.3896 -5.2122 38 1 -0.2252 0.6906 -3.4691 39 1 -0.6454 -1.6751 -3.0521 40 1 -1.7116 -1.1521 -4.3813 41 1 0.4723 -5.9185 -5.7717 42 1 1.5205 -3.1008 -3.8300 43 1 1.6484 -3.3642 -5.5883 44 1 3.2045 -1.5672 -4.7014 45 1 2.0908 -0.9980 -5.9694 46 1 2.1506 0.9301 2.5151 47 1 3.4727 -0.2620 2.2865 48 1 5.1713 1.3392 2.8853 49 1 3.8424 1.8082 3.9940 50 1 4.9350 2.7220 0.4159 51 1 3.2860 3.4021 0.3680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050604253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:13 Heat of formation + Delta-G solvation = -64.670917 kcal Electronic energy + Delta-G solvation = -31695.950123 eV Core-core repulsion = 27597.495002 eV Total energy + Delta-G solvation = -4098.455122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.98075 -39.82564 -38.38533 -37.52274 -35.83525 -33.07969 -32.45898 -30.68755 -30.13623 -29.71693 -27.87181 -26.96353 -26.05355 -25.43593 -24.02476 -22.98442 -22.36893 -21.24833 -20.73482 -19.35252 -18.11009 -17.57097 -16.84286 -16.76617 -16.52582 -16.11964 -15.62420 -15.39295 -15.32708 -14.90298 -14.72591 -14.31363 -13.88793 -13.74171 -13.52200 -13.49788 -13.17726 -13.10809 -12.72341 -12.48570 -12.30686 -11.99876 -11.83583 -11.81551 -11.59156 -11.52061 -11.48622 -11.35628 -11.06478 -10.96006 -10.78994 -10.68804 -10.50949 -10.28415 -10.17946 -9.94351 -9.85449 -9.65379 -9.58336 -9.12726 -8.54848 -8.49566 -6.64298 -5.82527 -3.30267 2.49368 2.90343 3.29777 3.33716 3.42129 3.43793 3.69625 4.13845 4.40316 4.45519 4.51008 4.66271 4.70593 4.80357 4.89779 4.96247 5.08494 5.12845 5.19907 5.25116 5.34056 5.37397 5.42938 5.49370 5.51829 5.55715 5.58005 5.58940 5.64198 5.72484 5.74899 5.81086 5.83019 6.00848 6.05507 6.10157 6.24074 6.45488 6.54994 6.59190 6.60610 6.64133 6.74260 6.79456 6.91030 7.31301 7.63322 7.76625 7.80750 8.12557 8.44846 9.19075 9.80527 10.38490 11.25215 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024343 B = 0.002735 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.974659 B =10234.368574 C =10559.194139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.368 6.368 3 C 0.089 3.911 4 H 0.094 0.906 5 C 0.512 3.488 6 O -0.550 6.550 7 N -0.625 5.625 8 C 0.106 3.894 9 C -0.079 4.079 10 C 0.123 3.877 11 C -0.107 4.107 12 C 0.149 3.851 13 N -0.590 5.590 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.174 3.826 23 C -0.128 4.128 24 C -0.111 4.111 25 H 0.094 0.906 26 C -0.138 4.138 27 C 0.043 3.957 28 O -0.377 6.377 29 C 0.048 3.952 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.017 0.983 40 H 0.054 0.946 41 H 0.253 0.747 42 H 0.019 0.981 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.094 0.906 50 H 0.063 0.937 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.022 10.149 13.586 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.286 6.286 3 C 0.028 3.972 4 H 0.112 0.888 5 C 0.300 3.700 6 O -0.430 6.430 7 N -0.358 5.358 8 C -0.016 4.016 9 C -0.080 4.080 10 C 0.001 3.999 11 C -0.146 4.146 12 C 0.022 3.978 13 N -0.312 5.312 14 C -0.383 4.383 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.048 3.952 23 C -0.167 4.167 24 C -0.131 4.131 25 H 0.112 0.888 26 C -0.176 4.176 27 C -0.034 4.034 28 O -0.296 6.296 29 C -0.029 4.029 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.112 0.888 50 H 0.081 0.919 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.235 10.765 13.688 18.497 hybrid contribution -0.452 -0.541 -0.924 1.162 sum 5.783 10.224 12.765 17.347 Atomic orbital electron populations 1.22948 0.80128 1.03829 1.00328 1.87999 1.20422 1.25532 1.94663 1.22369 0.96083 0.86547 0.92202 0.88808 1.20878 0.76942 0.85328 0.86806 1.90692 1.51564 1.16602 1.84116 1.50058 1.67237 1.10470 1.08038 1.23436 0.99883 0.99101 0.79199 1.22038 0.96311 0.94493 0.95138 1.23383 1.01180 0.79761 0.95544 1.21756 0.92778 0.99294 1.00813 1.20876 0.95297 0.88146 0.93469 1.43975 1.05071 1.44094 1.38103 1.19200 1.12700 0.93114 1.13264 0.91913 1.25148 0.99508 0.95771 0.98920 1.69986 1.38461 1.08556 1.37654 0.86234 0.78744 0.79023 0.82822 1.20264 1.21566 1.21689 1.20760 0.82504 0.91680 1.00283 1.22145 0.98489 0.98064 0.98045 1.22496 0.95237 0.98345 0.96990 0.88808 1.23084 1.01031 1.00684 0.92797 1.23615 0.98664 0.83793 0.97315 1.88892 1.94782 1.28152 1.17805 1.23308 1.01141 0.95503 0.82912 0.93707 0.93517 0.88470 0.90022 0.90530 0.88962 0.90082 0.91835 0.93310 0.96532 0.92754 0.93657 0.96302 0.89364 0.92938 0.92082 0.90206 0.89429 0.92070 0.88826 0.91913 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.45 101.05 0.96 1.19 16 2 O -0.37 -4.21 7.43 -35.23 -0.26 -4.47 16 3 C 0.09 1.04 1.90 -27.88 -0.05 0.99 16 4 H 0.09 1.04 7.79 -51.93 -0.40 0.64 16 5 C 0.51 7.44 7.07 -10.98 -0.08 7.36 16 6 O -0.55 -9.54 16.16 5.56 0.09 -9.45 16 7 N -0.62 -8.89 3.44 -180.16 -0.62 -9.51 16 8 C 0.11 1.49 7.97 -3.14 -0.03 1.46 16 9 C -0.08 -1.20 0.77 -154.42 -0.12 -1.32 16 10 C 0.12 1.74 6.27 -3.16 -0.02 1.72 16 11 C -0.11 -1.75 5.21 -26.74 -0.14 -1.89 16 12 C 0.15 2.88 6.38 -3.66 -0.02 2.86 16 13 N -0.59 -13.80 2.95 -172.21 -0.51 -14.30 16 14 C -0.25 -6.63 9.55 -15.06 -0.14 -6.77 16 15 H 0.06 1.64 7.86 -52.49 -0.41 1.22 16 16 C 0.01 0.14 5.00 -17.43 -0.09 0.05 16 17 N -0.90 -25.06 11.16 55.49 0.62 -24.44 16 18 Si 0.90 21.02 29.57 -169.99 -5.03 15.99 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.17 3.79 5.19 -3.66 -0.02 3.77 16 23 C -0.13 -2.18 5.25 -26.73 -0.14 -2.32 16 24 C -0.11 -1.15 2.82 -89.09 -0.25 -1.41 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.14 -1.16 6.39 -24.73 -0.16 -1.32 16 27 C 0.04 0.36 7.72 38.21 0.29 0.65 16 28 O -0.38 -4.40 11.52 -35.23 -0.41 -4.80 16 29 C 0.05 0.54 6.95 37.73 0.26 0.81 16 30 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.05 0.51 8.13 -51.92 -0.42 0.09 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 34 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 35 H 0.09 1.33 4.80 -51.93 -0.25 1.08 16 36 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.75 8.01 -51.93 -0.42 0.33 16 39 H 0.02 0.32 7.52 -51.93 -0.39 -0.07 16 40 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 41 H 0.25 6.82 8.31 -40.82 -0.34 6.49 16 42 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 43 H 0.09 2.21 6.09 -51.93 -0.32 1.90 16 44 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.10 1.33 6.17 -51.93 -0.32 1.01 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -30.24 391.57 -8.74 -38.99 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.79 Total: 0.25 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 0.26 Total: 5.84 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.51 Total: -48.25 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.58 Total: -18.72 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.24 -8.74 -38.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050604253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.682 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds