Wall clock time and date at job start Tue Mar 31 2020 21:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.42895 * 113.99819 * 2 1 4 4 H 1.09005 * 109.47332 * 29.99885 * 3 2 1 5 5 C 1.53005 * 109.47129 * 269.99931 * 3 2 1 6 6 C 1.52996 * 109.46732 * 300.00212 * 5 3 2 7 7 C 1.52996 * 109.47500 * 299.99583 * 6 5 3 8 8 C 1.53002 * 109.47052 * 60.00200 * 7 6 5 9 9 C 1.53001 * 109.47060 * 149.99829 * 3 2 1 10 10 H 1.08998 * 109.47384 * 179.97438 * 9 3 2 11 11 C 1.50694 * 109.47198 * 299.99896 * 9 3 2 12 12 O 1.21284 * 119.99966 * 96.11291 * 11 9 3 13 13 N 1.34774 * 120.00019 * 276.10645 * 11 9 3 14 14 C 1.47127 * 121.05679 * 4.84831 * 13 11 9 15 15 C 1.52761 * 108.97444 * 232.16883 * 14 13 11 16 16 O 1.43110 * 109.42248 * 306.11277 * 15 14 13 17 17 C 1.42489 * 113.96573 * 59.83159 * 16 15 14 18 18 C 1.53471 * 113.76756 * 73.17460 * 17 16 15 19 19 N 1.47667 * 85.97118 * 91.28436 * 18 17 16 20 20 C 1.36936 * 134.45625 * 204.31853 * 19 18 17 21 21 H 1.08005 * 119.99815 * 179.97438 * 20 19 18 22 22 C 1.38806 * 120.00218 * 359.96927 * 20 19 18 23 23 N 1.31620 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00055 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47016 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47052 * 119.99768 * 24 22 20 27 27 H 1.48498 * 109.47170 * 239.99967 * 24 22 20 28 28 C 1.47675 * 91.08626 * 24.29345 * 19 18 17 29 29 C 1.47345 * 121.05422 * 185.12070 * 13 11 9 30 30 H 1.08998 * 109.46984 * 60.00122 * 1 2 3 31 31 H 1.08998 * 109.46808 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46494 * 300.00108 * 1 2 3 33 33 H 1.09000 * 109.46967 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47074 * 60.00508 * 5 3 2 35 35 H 1.09000 * 109.47524 * 60.00183 * 6 5 3 36 36 H 1.09007 * 109.46944 * 180.02562 * 6 5 3 37 37 H 1.08995 * 109.47441 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47221 * 300.00785 * 7 6 5 39 39 H 1.08994 * 109.47651 * 180.02562 * 8 7 6 40 40 H 1.09007 * 109.46940 * 59.99625 * 8 7 6 41 41 H 1.09004 * 109.59215 * 351.99242 * 14 13 11 42 42 H 1.08994 * 109.59929 * 112.44732 * 14 13 11 43 43 H 1.09000 * 109.56766 * 186.06556 * 15 14 13 44 44 H 1.08999 * 109.34763 * 66.03040 * 15 14 13 45 45 H 1.08999 * 113.79508 * 205.55022 * 18 17 16 46 46 H 1.09005 * 113.78746 * 337.02119 * 18 17 16 47 47 H 0.96999 * 119.99774 * 179.97438 * 23 22 20 48 48 H 1.09005 * 113.79424 * 221.43575 * 28 19 18 49 49 H 1.09000 * 113.89502 * 89.98510 * 28 19 18 50 50 H 1.09004 * 109.74841 * 251.24501 * 29 13 11 51 51 H 1.09001 * 109.74969 * 11.91952 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1515 0.7973 -2.1637 7 6 4.5002 0.7551 -1.4425 8 6 4.2928 0.2893 0.0000 9 6 3.3589 1.2633 0.7213 10 1 3.8025 2.2589 0.7209 11 6 3.1546 0.8044 2.1421 12 8 3.3126 -0.3629 2.4310 13 7 2.7965 1.6912 3.0917 14 6 2.4961 3.0901 2.7493 15 6 3.3251 4.0096 3.6442 16 8 3.0998 3.6685 5.0157 17 6 3.4509 2.3271 5.3437 18 6 4.9646 2.0815 5.4059 19 7 4.8547 2.4158 6.8400 20 6 5.7258 2.8920 7.7832 21 1 5.3879 3.0576 8.7956 22 6 7.0430 3.1616 7.4383 23 7 7.4549 2.9591 6.2047 24 14 8.2314 3.8104 8.7252 25 1 7.5266 3.9485 10.0249 26 1 9.3645 2.8623 8.8754 27 1 8.7481 5.1356 8.2984 28 6 3.4289 2.0314 6.8492 29 6 2.6992 1.2918 4.5066 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 2.6615 2.7669 -1.4425 34 1 1.2569 1.8015 -1.9563 35 1 2.7082 -0.1985 -2.1637 36 1 3.2997 1.1295 -3.1913 37 1 5.1656 0.0615 -1.9566 38 1 4.9435 1.7509 -1.4425 39 1 5.2535 0.2596 0.5140 40 1 3.8494 -0.7065 0.0000 41 1 2.7493 3.2733 1.7050 42 1 1.4362 3.2865 2.9105 43 1 3.0321 5.0456 3.4743 44 1 4.3820 3.8867 3.4078 45 1 5.2504 1.0469 5.2161 46 1 5.5503 2.7987 4.8307 47 1 8.3753 3.1479 5.9636 48 1 2.7945 2.7087 7.4211 49 1 3.2560 0.9823 7.0889 50 1 1.6526 1.2625 4.8100 51 1 3.1498 0.3088 4.6437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053547466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:33 Heat of formation + Delta-G solvation = -62.604812 kcal Electronic energy + Delta-G solvation = -32002.016223 eV Core-core repulsion = 27903.650694 eV Total energy + Delta-G solvation = -4098.365528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.79713 -39.55494 -38.10883 -36.22899 -36.06778 -34.38716 -32.30111 -31.38625 -30.42210 -29.85378 -27.84538 -26.78928 -26.05172 -25.06572 -23.50862 -23.28758 -22.66188 -21.62000 -20.01312 -19.10664 -18.73127 -17.23900 -16.82665 -16.59604 -16.18962 -15.86243 -15.74622 -15.44489 -14.98564 -14.75361 -14.49765 -14.26201 -14.10663 -13.87395 -13.66944 -13.42518 -13.28091 -13.05777 -12.72394 -12.63221 -12.39873 -12.31182 -12.13816 -11.90620 -11.57823 -11.34404 -11.22294 -11.12565 -10.94853 -10.86945 -10.79524 -10.64662 -10.60108 -10.30013 -10.18883 -9.96424 -9.80300 -9.57490 -9.29041 -9.20944 -8.81157 -8.19304 -6.85710 -5.73298 -3.05413 2.78555 3.01534 3.41319 3.46275 3.49029 3.54256 4.05255 4.31078 4.46022 4.46838 4.58438 4.80846 4.91414 4.93865 4.96767 5.01361 5.01894 5.09841 5.13466 5.22069 5.24917 5.26369 5.30634 5.34651 5.39399 5.45001 5.55062 5.56641 5.62354 5.69998 5.77394 5.83827 5.91631 5.98428 6.01439 6.03884 6.10655 6.17569 6.31888 6.41213 6.49411 6.51015 6.61836 6.98514 7.02761 7.20922 7.52042 7.52911 7.82765 8.00096 8.35865 9.06802 9.73475 10.60056 11.43894 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.003116 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.786149 B = 8982.531304 C = 9560.862534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.100 3.900 4 H 0.063 0.937 5 C -0.139 4.139 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.099 4.099 9 C -0.103 4.103 10 H 0.102 0.898 11 C 0.526 3.474 12 O -0.526 6.526 13 N -0.613 5.613 14 C 0.072 3.928 15 C 0.046 3.954 16 O -0.342 6.342 17 C 0.049 3.951 18 C 0.152 3.848 19 N -0.603 5.603 20 C -0.217 4.217 21 H 0.081 0.919 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.136 3.864 29 C 0.102 3.898 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.076 0.924 47 H 0.252 0.748 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.066 0.934 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.207 -0.671 -18.210 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.042 3.958 4 H 0.081 0.919 5 C -0.177 4.177 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.136 4.136 9 C -0.125 4.125 10 H 0.120 0.880 11 C 0.313 3.687 12 O -0.401 6.401 13 N -0.348 5.348 14 C -0.051 4.051 15 C -0.032 4.032 16 O -0.259 6.259 17 C 0.008 3.992 18 C 0.026 3.974 19 N -0.329 5.329 20 C -0.345 4.345 21 H 0.099 0.901 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.009 3.991 29 C -0.022 4.022 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.051 0.949 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.768 -1.234 -17.775 22.517 hybrid contribution 0.581 0.539 0.486 0.930 sum -13.187 -0.696 -17.288 21.755 Atomic orbital electron populations 1.22772 0.81462 1.02758 0.99558 1.88037 1.19086 1.26557 1.94881 1.21974 0.93072 0.85534 0.95258 0.91950 1.22022 1.00424 0.99705 0.95505 1.21436 0.95378 1.00229 0.98169 1.21548 0.97037 1.01443 0.95565 1.21314 0.98580 0.99510 0.94236 1.21478 0.96813 1.02027 0.92136 0.88029 1.20365 0.76141 0.85606 0.86539 1.90676 1.50320 1.17184 1.81961 1.48180 1.68828 1.09908 1.07846 1.22378 1.00563 0.81902 1.00295 1.22783 0.99498 0.98092 0.82799 1.87930 1.85330 1.27929 1.24745 1.23696 0.97616 0.81960 0.95964 1.22672 0.89639 0.98295 0.86771 1.45788 1.05508 1.74192 1.07440 1.19048 0.89914 1.35180 0.90357 0.90079 1.24766 0.96919 1.02007 0.96786 1.69828 1.16243 1.54098 1.16786 0.86036 0.81071 0.78158 0.80439 1.20446 1.21796 1.21745 1.22487 0.88583 0.97716 0.90267 1.22212 1.00624 1.00125 0.79189 0.94280 0.89666 0.94247 0.90820 0.91582 0.91101 0.92223 0.91556 0.92063 0.91436 0.89837 0.89357 0.90856 0.88179 0.92088 0.94929 0.90617 0.93792 0.92649 0.93249 0.91585 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.37 16 2 O -0.37 -4.32 8.62 -35.23 -0.30 -4.62 16 3 C 0.10 0.99 2.15 -26.73 -0.06 0.93 16 4 H 0.06 0.55 6.93 -51.93 -0.36 0.19 16 5 C -0.14 -1.07 5.63 -26.73 -0.15 -1.22 16 6 C -0.11 -0.95 5.78 -26.74 -0.15 -1.10 16 7 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 8 C -0.10 -1.20 4.58 -26.73 -0.12 -1.32 16 9 C -0.10 -1.22 1.50 -91.77 -0.14 -1.36 16 10 H 0.10 1.03 6.55 -51.93 -0.34 0.69 16 11 C 0.53 8.24 6.48 -10.99 -0.07 8.17 16 12 O -0.53 -10.26 15.60 5.55 0.09 -10.17 16 13 N -0.61 -9.19 3.03 -172.71 -0.52 -9.71 16 14 C 0.07 0.85 5.91 -3.82 -0.02 0.82 16 15 C 0.05 0.67 6.87 37.04 0.25 0.93 16 16 O -0.34 -6.55 10.52 -35.23 -0.37 -6.92 16 17 C 0.05 0.97 1.21 -90.30 -0.11 0.86 16 18 C 0.15 3.72 6.65 -3.17 -0.02 3.70 16 19 N -0.60 -16.00 3.70 -180.29 -0.67 -16.67 16 20 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 21 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -27.89 11.39 55.49 0.63 -27.26 16 24 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.14 2.88 8.33 -3.18 -0.03 2.85 16 29 C 0.10 1.71 5.76 -3.63 -0.02 1.69 16 30 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 35 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.18 7.41 -51.92 -0.39 0.80 16 41 H 0.09 0.78 5.18 -51.93 -0.27 0.51 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.00 7.19 -51.93 -0.37 0.63 16 45 H 0.03 0.85 7.94 -51.93 -0.41 0.43 16 46 H 0.08 2.05 6.31 -51.93 -0.33 1.72 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 50 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.10 1.85 6.96 -51.93 -0.36 1.49 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -35.24 389.16 -8.93 -44.17 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.66 Total: -0.56 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 0.04 Total: 8.31 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.56 Total: -53.63 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.59 Total: -21.71 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.24 -8.93 -44.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053547466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.436 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds