Wall clock time and date at job start Tue Mar 31 2020 21:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.42895 * 113.99819 * 2 1 4 4 H 1.09005 * 109.47332 * 29.99885 * 3 2 1 5 5 C 1.53005 * 109.47129 * 269.99931 * 3 2 1 6 6 C 1.52996 * 109.46732 * 300.00212 * 5 3 2 7 7 C 1.52996 * 109.47500 * 299.99583 * 6 5 3 8 8 C 1.53002 * 109.47052 * 60.00200 * 7 6 5 9 9 C 1.53001 * 109.47060 * 149.99829 * 3 2 1 10 10 H 1.08998 * 109.47384 * 179.97438 * 9 3 2 11 11 C 1.50694 * 109.47198 * 299.99896 * 9 3 2 12 12 O 1.21284 * 119.99966 * 96.11291 * 11 9 3 13 13 N 1.34774 * 120.00019 * 276.10645 * 11 9 3 14 14 C 1.47127 * 121.05679 * 4.84831 * 13 11 9 15 15 C 1.52761 * 108.97444 * 232.16883 * 14 13 11 16 16 O 1.43110 * 109.42248 * 306.11277 * 15 14 13 17 17 C 1.42489 * 113.96573 * 59.83159 * 16 15 14 18 18 C 1.53471 * 113.76756 * 73.17460 * 17 16 15 19 19 N 1.47667 * 85.97118 * 91.28436 * 18 17 16 20 20 C 1.36936 * 134.45625 * 204.31853 * 19 18 17 21 21 H 1.08005 * 119.99815 * 179.97438 * 20 19 18 22 22 C 1.38806 * 120.00218 * 359.96927 * 20 19 18 23 23 N 1.31620 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00055 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47016 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47052 * 119.99768 * 24 22 20 27 27 H 1.48498 * 109.47170 * 239.99967 * 24 22 20 28 28 C 1.47675 * 91.08626 * 24.29345 * 19 18 17 29 29 C 1.47345 * 121.05422 * 185.12070 * 13 11 9 30 30 H 1.08998 * 109.46984 * 60.00122 * 1 2 3 31 31 H 1.08998 * 109.46808 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46494 * 300.00108 * 1 2 3 33 33 H 1.09000 * 109.46967 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47074 * 60.00508 * 5 3 2 35 35 H 1.09000 * 109.47524 * 60.00183 * 6 5 3 36 36 H 1.09007 * 109.46944 * 180.02562 * 6 5 3 37 37 H 1.08995 * 109.47441 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47221 * 300.00785 * 7 6 5 39 39 H 1.08994 * 109.47651 * 180.02562 * 8 7 6 40 40 H 1.09007 * 109.46940 * 59.99625 * 8 7 6 41 41 H 1.09004 * 109.59215 * 351.99242 * 14 13 11 42 42 H 1.08994 * 109.59929 * 112.44732 * 14 13 11 43 43 H 1.09000 * 109.56766 * 186.06556 * 15 14 13 44 44 H 1.08999 * 109.34763 * 66.03040 * 15 14 13 45 45 H 1.08999 * 113.79508 * 205.55022 * 18 17 16 46 46 H 1.09005 * 113.78746 * 337.02119 * 18 17 16 47 47 H 0.96999 * 119.99774 * 179.97438 * 23 22 20 48 48 H 1.09005 * 113.79424 * 221.43575 * 28 19 18 49 49 H 1.09000 * 113.89502 * 89.98510 * 28 19 18 50 50 H 1.09004 * 109.74841 * 251.24501 * 29 13 11 51 51 H 1.09001 * 109.74969 * 11.91952 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1515 0.7973 -2.1637 7 6 4.5002 0.7551 -1.4425 8 6 4.2928 0.2893 0.0000 9 6 3.3589 1.2633 0.7213 10 1 3.8025 2.2589 0.7209 11 6 3.1546 0.8044 2.1421 12 8 3.3126 -0.3629 2.4310 13 7 2.7965 1.6912 3.0917 14 6 2.4961 3.0901 2.7493 15 6 3.3251 4.0096 3.6442 16 8 3.0998 3.6685 5.0157 17 6 3.4509 2.3271 5.3437 18 6 4.9646 2.0815 5.4059 19 7 4.8547 2.4158 6.8400 20 6 5.7258 2.8920 7.7832 21 1 5.3879 3.0576 8.7956 22 6 7.0430 3.1616 7.4383 23 7 7.4549 2.9591 6.2047 24 14 8.2314 3.8104 8.7252 25 1 7.5266 3.9485 10.0249 26 1 9.3645 2.8623 8.8754 27 1 8.7481 5.1356 8.2984 28 6 3.4289 2.0314 6.8492 29 6 2.6992 1.2918 4.5066 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 2.6615 2.7669 -1.4425 34 1 1.2569 1.8015 -1.9563 35 1 2.7082 -0.1985 -2.1637 36 1 3.2997 1.1295 -3.1913 37 1 5.1656 0.0615 -1.9566 38 1 4.9435 1.7509 -1.4425 39 1 5.2535 0.2596 0.5140 40 1 3.8494 -0.7065 0.0000 41 1 2.7493 3.2733 1.7050 42 1 1.4362 3.2865 2.9105 43 1 3.0321 5.0456 3.4743 44 1 4.3820 3.8867 3.4078 45 1 5.2504 1.0469 5.2161 46 1 5.5503 2.7987 4.8307 47 1 8.3753 3.1479 5.9636 48 1 2.7945 2.7087 7.4211 49 1 3.2560 0.9823 7.0889 50 1 1.6526 1.2625 4.8100 51 1 3.1498 0.3088 4.6437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053547466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:32 Heat of formation + Delta-G solvation = -87.267167 kcal Electronic energy + Delta-G solvation = -32003.085663 eV Core-core repulsion = 27903.650694 eV Total energy + Delta-G solvation = -4099.434968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.98779 -40.82470 -39.26140 -37.78258 -36.87079 -35.75004 -34.32076 -32.40654 -31.39685 -31.02453 -29.40124 -27.91486 -27.28411 -26.88529 -24.72964 -24.54541 -23.43196 -23.17753 -20.94717 -20.44646 -19.98378 -18.84859 -18.33914 -17.68316 -17.27905 -17.08570 -16.88859 -16.76495 -16.28731 -16.07564 -15.75813 -15.62773 -15.36280 -15.00081 -14.83544 -14.79440 -14.51163 -14.25819 -14.02388 -13.81568 -13.57064 -13.30127 -13.19404 -13.01865 -12.94461 -12.83415 -12.79942 -12.52194 -12.27501 -12.09493 -12.01807 -11.93401 -11.74584 -11.71749 -11.46063 -11.36283 -11.01482 -10.99916 -10.82313 -10.78663 -10.27889 -9.53644 -8.96988 -7.92956 -5.27615 1.42809 1.44774 1.55106 1.59201 1.85715 2.43959 2.63431 2.83951 3.24103 3.31098 3.37563 3.60836 3.70970 3.74566 3.79331 3.94652 4.08296 4.12458 4.16963 4.23920 4.29937 4.37068 4.37780 4.43540 4.53801 4.57213 4.59844 4.59995 4.62146 4.68045 4.78121 4.79348 4.84721 4.87766 4.93435 4.96126 5.03443 5.10097 5.20702 5.23607 5.25402 5.30571 5.33340 5.38227 5.44294 5.58941 5.86330 6.27572 6.32440 6.39916 6.86615 7.15152 7.56192 8.49356 9.23886 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.003116 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.786149 B = 8982.531304 C = 9560.862534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.099 3.901 4 H 0.081 0.919 5 C -0.134 4.134 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.097 4.097 9 C -0.099 4.099 10 H 0.125 0.875 11 C 0.519 3.481 12 O -0.576 6.576 13 N -0.616 5.616 14 C 0.076 3.924 15 C 0.038 3.962 16 O -0.361 6.361 17 C 0.081 3.919 18 C 0.152 3.848 19 N -0.634 5.634 20 C -0.233 4.233 21 H 0.087 0.913 22 C -0.069 4.069 23 N -0.956 5.956 24 Si 0.983 3.017 25 H -0.263 1.263 26 H -0.293 1.293 27 H -0.289 1.289 28 C 0.133 3.867 29 C 0.110 3.890 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.137 0.863 44 H 0.033 0.967 45 H 0.006 0.994 46 H 0.042 0.958 47 H 0.247 0.753 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.392 1.477 -19.583 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C 0.041 3.959 4 H 0.099 0.901 5 C -0.171 4.171 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.135 4.135 9 C -0.120 4.120 10 H 0.142 0.858 11 C 0.309 3.691 12 O -0.454 6.454 13 N -0.349 5.349 14 C -0.046 4.046 15 C -0.038 4.038 16 O -0.279 6.279 17 C 0.039 3.961 18 C 0.026 3.974 19 N -0.360 5.360 20 C -0.361 4.361 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.605 5.605 24 Si 0.810 3.190 25 H -0.187 1.187 26 H -0.221 1.221 27 H -0.216 1.216 28 C 0.008 3.992 29 C -0.014 4.014 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.121 0.879 43 H 0.155 0.845 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.113 0.887 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.004 0.939 -19.153 24.978 hybrid contribution 1.252 -0.154 0.924 1.564 sum -14.752 0.785 -18.230 23.464 Atomic orbital electron populations 1.22894 0.80127 1.03200 1.00647 1.88016 1.20699 1.27930 1.95124 1.22116 0.91728 0.85332 0.96705 0.90136 1.22036 1.01214 1.00242 0.93620 1.21421 0.94578 0.99815 0.99215 1.21530 0.98138 1.02115 0.93277 1.21256 0.97261 0.98624 0.96398 1.21578 0.98520 1.02517 0.89433 0.85756 1.21156 0.74866 0.85048 0.88079 1.90650 1.52369 1.19462 1.82955 1.48318 1.68399 1.11402 1.06805 1.22616 1.01603 0.78898 1.01482 1.23114 0.98740 1.00905 0.81085 1.87886 1.84985 1.27235 1.27827 1.23141 0.93939 0.83410 0.95620 1.22506 0.93232 0.95695 0.85966 1.46183 1.07518 1.74451 1.07866 1.19484 0.90751 1.34698 0.91162 0.89536 1.25673 0.98732 1.02875 0.98883 1.70039 1.16170 1.55523 1.18764 0.84950 0.78432 0.77073 0.78502 1.18718 1.22057 1.21624 1.22712 0.85879 0.98824 0.91773 1.21947 1.01310 0.97774 0.80372 0.92015 0.89772 0.94157 0.88622 0.89968 0.92835 0.90235 0.91493 0.90490 0.93819 0.92674 0.85792 0.87903 0.84542 0.94850 0.97622 0.93924 0.94373 0.91404 0.91422 0.88746 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 113.37 1.23 1.65 16 2 O -0.40 -8.87 8.62 -148.98 -1.28 -10.15 16 3 C 0.10 1.68 2.15 30.60 0.07 1.74 16 4 H 0.08 1.07 6.93 -2.38 -0.02 1.05 16 5 C -0.13 -1.52 5.63 30.59 0.17 -1.35 16 6 C -0.11 -1.58 5.78 30.59 0.18 -1.41 16 7 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 8 C -0.10 -2.41 4.58 30.60 0.14 -2.27 16 9 C -0.10 -2.22 1.50 -11.54 -0.02 -2.23 16 10 H 0.12 2.16 6.55 -2.39 -0.02 2.14 16 11 C 0.52 16.27 6.48 87.66 0.57 16.83 16 12 O -0.58 -23.53 15.60 -3.04 -0.05 -23.58 16 13 N -0.62 -17.74 3.03 -818.72 -2.48 -20.22 16 14 C 0.08 1.52 5.91 86.18 0.51 2.03 16 15 C 0.04 1.04 6.87 71.90 0.49 1.53 16 16 O -0.36 -13.42 10.52 -148.98 -1.57 -14.98 16 17 C 0.08 3.19 1.21 -10.49 -0.01 3.18 16 18 C 0.15 7.81 6.65 86.31 0.57 8.39 16 19 N -0.63 -34.50 3.70 -729.19 -2.70 -37.20 16 20 C -0.23 -13.67 10.70 84.03 0.90 -12.77 16 21 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 22 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 23 N -0.96 -60.06 11.39 21.65 0.25 -59.82 16 24 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 28 C 0.13 5.63 8.33 86.30 0.72 6.35 16 29 C 0.11 3.66 5.76 86.18 0.50 4.15 16 30 H 0.06 0.66 7.87 -2.39 -0.02 0.64 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 0.60 8.08 -2.39 -0.02 0.58 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.73 7.87 -2.39 -0.02 0.71 16 35 H 0.05 0.95 7.68 -2.39 -0.02 0.93 16 36 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.66 7.41 -2.38 -0.02 1.65 16 41 H 0.12 1.62 5.18 -2.38 -0.01 1.61 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.03 1.09 7.19 -2.39 -0.02 1.08 16 45 H 0.01 0.34 7.94 -2.39 -0.02 0.32 16 46 H 0.04 2.45 6.31 -2.38 -0.02 2.43 16 47 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 48 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 49 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 50 H 0.09 2.64 8.14 -2.38 -0.02 2.63 16 51 H 0.08 2.95 6.96 -2.39 -0.02 2.93 16 Total: -1.00 -82.12 389.16 1.76 -80.36 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.91 Total: 15.86 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 6.66 Total: 20.46 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -4.94 Total: -117.24 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -2.90 Total: -48.71 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -82.12 1.76 -80.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053547466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.911 kcal (2) G-P(sol) polarization free energy of solvation -82.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds