Wall clock time and date at job start Tue Mar 31 2020 21:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00076 * 2 1 4 4 H 1.08996 * 109.47135 * 30.00202 * 3 2 1 5 5 C 1.52999 * 109.47068 * 270.00109 * 3 2 1 6 6 C 1.53001 * 109.47129 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47271 * 59.99894 * 6 5 3 8 8 C 1.52999 * 109.47131 * 300.00105 * 7 6 5 9 9 C 1.53005 * 109.46858 * 150.00372 * 3 2 1 10 10 H 1.08996 * 109.47386 * 59.99984 * 9 3 2 11 11 C 1.50697 * 109.46768 * 299.99662 * 9 3 2 12 12 O 1.21278 * 120.00623 * 325.22775 * 11 9 3 13 13 N 1.34783 * 119.99719 * 145.23566 * 11 9 3 14 14 C 1.47129 * 121.05654 * 5.32969 * 13 11 9 15 15 C 1.53225 * 108.72349 * 127.77791 * 14 13 11 16 16 O 1.43102 * 109.34219 * 54.13274 * 15 14 13 17 17 C 1.42483 * 113.98137 * 300.04130 * 16 15 14 18 18 C 1.53466 * 113.76876 * 286.79456 * 17 16 15 19 19 N 1.47666 * 85.97346 * 268.71492 * 18 17 16 20 20 C 1.36932 * 134.45538 * 155.73898 * 19 18 17 21 21 H 1.08004 * 120.00155 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00120 * 359.95781 * 20 19 18 23 23 N 1.31619 * 120.00167 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47365 * 59.99987 * 24 22 20 26 26 H 1.48503 * 109.46918 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47065 * 299.99501 * 24 22 20 28 28 C 1.47668 * 91.08752 * 335.70943 * 19 18 17 29 29 C 1.47340 * 121.05534 * 185.06559 * 13 11 9 30 30 H 1.09006 * 109.47440 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46883 * 299.99589 * 1 2 3 32 32 H 1.08995 * 109.47737 * 59.99735 * 1 2 3 33 33 H 1.08996 * 109.47219 * 300.00042 * 5 3 2 34 34 H 1.09000 * 109.47179 * 59.99902 * 5 3 2 35 35 H 1.08997 * 109.47253 * 180.02562 * 6 5 3 36 36 H 1.09006 * 109.47001 * 299.99838 * 6 5 3 37 37 H 1.08996 * 109.47072 * 60.00198 * 7 6 5 38 38 H 1.09001 * 109.47204 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.47089 * 179.97438 * 8 7 6 40 40 H 1.08996 * 109.47219 * 300.00003 * 8 7 6 41 41 H 1.08991 * 109.59959 * 247.55661 * 14 13 11 42 42 H 1.09006 * 109.59305 * 7.86081 * 14 13 11 43 43 H 1.09004 * 109.48994 * 174.09594 * 15 14 13 44 44 H 1.09000 * 109.49615 * 294.14492 * 15 14 13 45 45 H 1.09006 * 113.79219 * 22.98170 * 18 17 16 46 46 H 1.09001 * 113.79110 * 154.44844 * 18 17 16 47 47 H 0.96999 * 120.00572 * 180.02562 * 23 22 20 48 48 H 1.09000 * 113.79080 * 270.02877 * 28 19 18 49 49 H 1.08996 * 113.79436 * 138.55731 * 28 19 18 50 50 H 1.08996 * 109.74446 * 348.01877 * 29 13 11 51 51 H 1.08993 * 109.75057 * 108.74949 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 2.8405 3.1688 -1.4425 7 6 4.1893 3.1260 -0.7215 8 6 3.9819 2.6601 0.7210 9 6 3.3589 1.2631 0.7212 10 1 4.0241 0.5692 0.2074 11 6 3.1546 0.8042 2.1420 12 8 2.1498 1.1206 2.7429 13 7 4.0886 0.0423 2.7450 14 6 5.3669 -0.2586 2.0814 15 6 6.5121 0.1026 3.0331 16 8 6.3171 -0.5646 4.2840 17 6 5.0989 -0.2227 4.9390 18 6 5.1002 1.1838 5.5529 19 7 5.5928 0.5331 6.7835 20 6 6.3129 0.9550 7.8691 21 1 6.5510 0.2613 8.6619 22 6 6.7372 2.2741 7.9505 23 7 6.4477 3.1194 6.9840 24 14 7.7189 2.8498 9.4318 25 1 8.9742 2.0626 9.5301 26 1 8.0478 4.2898 9.2784 27 1 6.9146 2.6550 10.6648 28 6 4.9970 -0.7547 6.3747 29 6 3.8644 -0.5110 4.0920 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 2.8828 1.0774 -1.9563 34 1 1.2568 1.8014 -1.9563 35 1 2.9879 3.5009 -2.4701 36 1 2.1756 3.8630 -0.9285 37 1 4.8542 2.4319 -1.2354 38 1 4.6328 4.1217 -0.7211 39 1 4.9429 2.6292 1.2346 40 1 3.3170 3.3542 1.2350 41 1 5.4127 -1.3206 1.8406 42 1 5.4505 0.3277 1.1662 43 1 7.4603 -0.2119 2.5970 44 1 6.5254 1.1806 3.1937 45 1 5.8205 1.8624 5.0957 46 1 4.1066 1.6205 5.6538 47 1 6.7445 4.0411 7.0406 48 1 3.9726 -0.8946 6.7201 49 1 5.6350 -1.6164 6.5706 50 1 2.9914 -0.0396 4.5431 51 1 3.7098 -1.5880 4.0268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053547468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:37 Heat of formation + Delta-G solvation = -65.391621 kcal Electronic energy + Delta-G solvation = -31906.043108 eV Core-core repulsion = 27807.556735 eV Total energy + Delta-G solvation = -4098.486374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.74230 -39.50465 -37.99359 -36.51266 -36.15218 -34.35048 -32.29045 -31.46835 -30.22839 -29.84130 -27.82177 -26.65224 -26.04704 -25.04202 -23.50941 -23.25930 -22.53953 -21.60537 -20.29974 -19.16272 -18.64318 -17.22135 -16.91380 -16.72353 -16.24403 -15.76054 -15.32923 -15.27750 -15.00775 -14.69905 -14.47026 -14.35948 -14.07233 -13.88546 -13.81448 -13.51239 -13.26538 -13.20413 -12.89060 -12.67944 -12.31421 -12.18193 -12.01177 -11.86680 -11.44227 -11.31286 -11.26291 -11.10197 -11.05617 -10.84379 -10.79689 -10.75630 -10.61544 -10.52637 -10.19904 -9.92449 -9.69437 -9.54782 -9.36100 -9.17251 -8.78560 -8.15550 -6.83902 -5.71369 -3.03480 2.79896 3.03898 3.43329 3.46698 3.48096 3.54978 4.09338 4.31035 4.42603 4.48435 4.70309 4.80783 4.91264 4.94164 4.97255 5.02488 5.08804 5.15840 5.17295 5.20239 5.23550 5.30663 5.32543 5.37583 5.44814 5.50954 5.57842 5.61209 5.63624 5.72233 5.78450 5.81259 5.85351 5.87356 5.89379 5.98351 6.03828 6.13271 6.15637 6.34351 6.51427 6.53593 6.64384 7.05718 7.06217 7.23143 7.53670 7.55090 7.86142 8.01932 8.34622 9.08405 9.75190 10.62261 11.45642 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.003159 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.394190 B = 8860.398627 C = 9396.811914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.383 6.383 3 C 0.106 3.894 4 H 0.073 0.927 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.110 4.110 9 C -0.103 4.103 10 H 0.097 0.903 11 C 0.532 3.468 12 O -0.540 6.540 13 N -0.608 5.608 14 C 0.073 3.927 15 C 0.047 3.953 16 O -0.342 6.342 17 C 0.049 3.951 18 C 0.152 3.848 19 N -0.603 5.603 20 C -0.219 4.219 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.913 3.087 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.136 3.864 29 C 0.100 3.900 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.033 0.967 47 H 0.253 0.747 48 H 0.050 0.950 49 H 0.056 0.944 50 H 0.100 0.900 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.069 -4.131 -20.908 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.048 3.952 4 H 0.091 0.909 5 C -0.176 4.176 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.148 4.148 9 C -0.124 4.124 10 H 0.115 0.885 11 C 0.320 3.680 12 O -0.416 6.416 13 N -0.342 5.342 14 C -0.051 4.051 15 C -0.030 4.030 16 O -0.259 6.259 17 C 0.008 3.992 18 C 0.027 3.973 19 N -0.329 5.329 20 C -0.346 4.346 21 H 0.098 0.902 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.009 3.991 29 C -0.023 4.023 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.119 0.881 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.184 -4.018 -20.294 21.900 hybrid contribution 0.149 0.714 0.667 0.988 sum -7.035 -3.304 -19.627 21.110 Atomic orbital electron populations 1.22739 0.80977 1.02491 0.99959 1.87865 1.19835 1.27487 1.95001 1.21918 0.93391 0.85278 0.94610 0.90907 1.22032 1.01534 0.97321 0.96736 1.21528 0.96924 0.96466 1.00759 1.21558 0.97282 1.01850 0.94894 1.21496 1.01639 0.93828 0.97793 1.21434 0.98186 0.99431 0.93385 0.88469 1.20314 0.82586 0.77244 0.87891 1.90658 1.28783 1.56093 1.66114 1.48103 1.16890 1.51288 1.17897 1.22475 0.84112 1.01848 0.96628 1.22862 0.97055 0.98378 0.84741 1.87923 1.38697 1.66261 1.33069 1.23585 0.83226 1.00572 0.91845 1.22671 0.97454 0.91682 0.85509 1.45774 1.60106 1.05395 1.21657 1.18956 1.25079 0.94149 0.96442 0.90202 1.24758 1.01270 0.95892 0.98487 1.69808 1.50356 1.04149 1.32682 0.86192 0.79910 0.77575 0.82034 1.21088 1.21616 1.21220 1.22486 0.96947 0.91972 0.87646 1.22131 0.99858 0.98449 0.81850 0.89922 0.93560 0.94416 0.91013 0.91591 0.91477 0.91663 0.91530 0.91094 0.90450 0.90632 0.90737 0.89151 0.88180 0.92156 0.90667 0.94933 0.93718 0.93290 0.92626 0.88132 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.45 16 2 O -0.38 -4.85 9.97 -35.23 -0.35 -5.20 16 3 C 0.11 1.21 1.71 -26.73 -0.05 1.16 16 4 H 0.07 0.92 7.50 -51.93 -0.39 0.53 16 5 C -0.14 -1.17 5.54 -26.73 -0.15 -1.32 16 6 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 7 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 8 C -0.11 -1.16 5.10 -26.75 -0.14 -1.29 16 9 C -0.10 -1.21 1.47 -91.79 -0.14 -1.35 16 10 H 0.10 1.00 6.24 -51.93 -0.32 0.68 16 11 C 0.53 8.42 6.35 -10.98 -0.07 8.35 16 12 O -0.54 -10.43 15.76 5.56 0.09 -10.34 16 13 N -0.61 -9.42 3.03 -172.70 -0.52 -9.95 16 14 C 0.07 0.90 6.30 -3.58 -0.02 0.88 16 15 C 0.05 0.71 6.88 37.27 0.26 0.97 16 16 O -0.34 -6.69 10.52 -35.23 -0.37 -7.06 16 17 C 0.05 0.99 1.21 -90.52 -0.11 0.88 16 18 C 0.15 3.77 6.64 -3.17 -0.02 3.75 16 19 N -0.60 -16.13 3.70 -180.32 -0.67 -16.80 16 20 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 21 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.99 11.39 55.49 0.63 -27.35 16 24 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.14 2.91 8.33 -3.18 -0.03 2.89 16 29 C 0.10 1.73 5.76 -3.86 -0.02 1.71 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.51 7.87 -51.93 -0.41 0.11 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.87 5.52 -51.93 -0.29 0.58 16 43 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.01 7.20 -51.93 -0.37 0.64 16 45 H 0.08 2.05 6.31 -51.93 -0.33 1.73 16 46 H 0.03 0.85 7.92 -51.93 -0.41 0.44 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.10 1.89 6.86 -51.93 -0.36 1.53 16 51 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -35.17 392.59 -9.00 -44.17 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.74 Total: -0.12 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 0.04 Total: 9.11 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.56 Total: -54.10 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.63 Total: -22.60 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.17 -9.00 -44.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053547468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.220 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds