Wall clock time and date at job start Tue Mar 31 2020 21:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00076 * 2 1 4 4 H 1.08996 * 109.47135 * 30.00202 * 3 2 1 5 5 C 1.52999 * 109.47068 * 270.00109 * 3 2 1 6 6 C 1.53001 * 109.47129 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47271 * 59.99894 * 6 5 3 8 8 C 1.52999 * 109.47131 * 300.00105 * 7 6 5 9 9 C 1.53005 * 109.46858 * 150.00372 * 3 2 1 10 10 H 1.08996 * 109.47386 * 59.99984 * 9 3 2 11 11 C 1.50697 * 109.46768 * 299.99662 * 9 3 2 12 12 O 1.21278 * 120.00623 * 325.22775 * 11 9 3 13 13 N 1.34783 * 119.99719 * 145.23566 * 11 9 3 14 14 C 1.47129 * 121.05654 * 5.32969 * 13 11 9 15 15 C 1.53225 * 108.72349 * 127.77791 * 14 13 11 16 16 O 1.43102 * 109.34219 * 54.13274 * 15 14 13 17 17 C 1.42483 * 113.98137 * 300.04130 * 16 15 14 18 18 C 1.53466 * 113.76876 * 286.79456 * 17 16 15 19 19 N 1.47666 * 85.97346 * 268.71492 * 18 17 16 20 20 C 1.36932 * 134.45538 * 155.73898 * 19 18 17 21 21 H 1.08004 * 120.00155 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00120 * 359.95781 * 20 19 18 23 23 N 1.31619 * 120.00167 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47365 * 59.99987 * 24 22 20 26 26 H 1.48503 * 109.46918 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47065 * 299.99501 * 24 22 20 28 28 C 1.47668 * 91.08752 * 335.70943 * 19 18 17 29 29 C 1.47340 * 121.05534 * 185.06559 * 13 11 9 30 30 H 1.09006 * 109.47440 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46883 * 299.99589 * 1 2 3 32 32 H 1.08995 * 109.47737 * 59.99735 * 1 2 3 33 33 H 1.08996 * 109.47219 * 300.00042 * 5 3 2 34 34 H 1.09000 * 109.47179 * 59.99902 * 5 3 2 35 35 H 1.08997 * 109.47253 * 180.02562 * 6 5 3 36 36 H 1.09006 * 109.47001 * 299.99838 * 6 5 3 37 37 H 1.08996 * 109.47072 * 60.00198 * 7 6 5 38 38 H 1.09001 * 109.47204 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.47089 * 179.97438 * 8 7 6 40 40 H 1.08996 * 109.47219 * 300.00003 * 8 7 6 41 41 H 1.08991 * 109.59959 * 247.55661 * 14 13 11 42 42 H 1.09006 * 109.59305 * 7.86081 * 14 13 11 43 43 H 1.09004 * 109.48994 * 174.09594 * 15 14 13 44 44 H 1.09000 * 109.49615 * 294.14492 * 15 14 13 45 45 H 1.09006 * 113.79219 * 22.98170 * 18 17 16 46 46 H 1.09001 * 113.79110 * 154.44844 * 18 17 16 47 47 H 0.96999 * 120.00572 * 180.02562 * 23 22 20 48 48 H 1.09000 * 113.79080 * 270.02877 * 28 19 18 49 49 H 1.08996 * 113.79436 * 138.55731 * 28 19 18 50 50 H 1.08996 * 109.74446 * 348.01877 * 29 13 11 51 51 H 1.08993 * 109.75057 * 108.74949 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 2.8405 3.1688 -1.4425 7 6 4.1893 3.1260 -0.7215 8 6 3.9819 2.6601 0.7210 9 6 3.3589 1.2631 0.7212 10 1 4.0241 0.5692 0.2074 11 6 3.1546 0.8042 2.1420 12 8 2.1498 1.1206 2.7429 13 7 4.0886 0.0423 2.7450 14 6 5.3669 -0.2586 2.0814 15 6 6.5121 0.1026 3.0331 16 8 6.3171 -0.5646 4.2840 17 6 5.0989 -0.2227 4.9390 18 6 5.1002 1.1838 5.5529 19 7 5.5928 0.5331 6.7835 20 6 6.3129 0.9550 7.8691 21 1 6.5510 0.2613 8.6619 22 6 6.7372 2.2741 7.9505 23 7 6.4477 3.1194 6.9840 24 14 7.7189 2.8498 9.4318 25 1 8.9742 2.0626 9.5301 26 1 8.0478 4.2898 9.2784 27 1 6.9146 2.6550 10.6648 28 6 4.9970 -0.7547 6.3747 29 6 3.8644 -0.5110 4.0920 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 2.8828 1.0774 -1.9563 34 1 1.2568 1.8014 -1.9563 35 1 2.9879 3.5009 -2.4701 36 1 2.1756 3.8630 -0.9285 37 1 4.8542 2.4319 -1.2354 38 1 4.6328 4.1217 -0.7211 39 1 4.9429 2.6292 1.2346 40 1 3.3170 3.3542 1.2350 41 1 5.4127 -1.3206 1.8406 42 1 5.4505 0.3277 1.1662 43 1 7.4603 -0.2119 2.5970 44 1 6.5254 1.1806 3.1937 45 1 5.8205 1.8624 5.0957 46 1 4.1066 1.6205 5.6538 47 1 6.7445 4.0411 7.0406 48 1 3.9726 -0.8946 6.7201 49 1 5.6350 -1.6164 6.5706 50 1 2.9914 -0.0396 4.5431 51 1 3.7098 -1.5880 4.0268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053547468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:36 Heat of formation + Delta-G solvation = -89.883914 kcal Electronic energy + Delta-G solvation = -31907.105174 eV Core-core repulsion = 27807.556735 eV Total energy + Delta-G solvation = -4099.548439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.98426 -40.82364 -39.17969 -37.76147 -37.32310 -35.74319 -34.32143 -32.48285 -31.31011 -30.97326 -29.39689 -27.91613 -27.29944 -26.89019 -24.76696 -24.50058 -23.45493 -23.08423 -21.12191 -20.64901 -19.92917 -18.84564 -18.36970 -17.83450 -17.49635 -17.14046 -16.86615 -16.49967 -16.12425 -15.95041 -15.83356 -15.76226 -15.27483 -15.09112 -14.92851 -14.74260 -14.55382 -14.38905 -14.13379 -13.98548 -13.72647 -13.34797 -13.09888 -13.08538 -12.93153 -12.74685 -12.64901 -12.56560 -12.28079 -12.09955 -12.04246 -11.98537 -11.81193 -11.71191 -11.51002 -11.40688 -11.30192 -10.97771 -10.81391 -10.72309 -10.38931 -9.53693 -8.96921 -7.92298 -5.27227 1.42469 1.47210 1.52999 1.57705 1.84794 2.44515 2.63260 2.70947 3.24228 3.30696 3.36083 3.60508 3.63257 3.75127 3.91613 3.94798 4.08981 4.12957 4.15251 4.20310 4.24885 4.31133 4.37223 4.43585 4.46354 4.49966 4.53784 4.59510 4.61408 4.67756 4.78484 4.79322 4.80959 4.84081 4.87717 4.94535 5.02554 5.10119 5.12695 5.17032 5.20836 5.25891 5.30106 5.33063 5.43586 5.48037 5.86406 6.21337 6.30815 6.36207 6.86468 7.11131 7.56481 8.49884 9.24109 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.003159 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.394190 B = 8860.398627 C = 9396.811914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.402 6.402 3 C 0.104 3.896 4 H 0.049 0.951 5 C -0.130 4.130 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.095 4.095 10 H 0.122 0.878 11 C 0.523 3.477 12 O -0.585 6.585 13 N -0.613 5.613 14 C 0.077 3.923 15 C 0.041 3.959 16 O -0.361 6.361 17 C 0.080 3.920 18 C 0.154 3.846 19 N -0.634 5.634 20 C -0.236 4.236 21 H 0.087 0.913 22 C -0.068 4.068 23 N -0.956 5.956 24 Si 0.983 3.017 25 H -0.273 1.273 26 H -0.293 1.293 27 H -0.277 1.277 28 C 0.134 3.866 29 C 0.108 3.892 30 H 0.096 0.904 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.124 0.876 43 H 0.136 0.864 44 H 0.033 0.967 45 H 0.041 0.959 46 H 0.006 0.994 47 H 0.248 0.752 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.078 0.922 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -5.592 -23.329 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.321 6.321 3 C 0.046 3.954 4 H 0.067 0.933 5 C -0.167 4.167 6 C -0.155 4.155 7 C -0.150 4.150 8 C -0.147 4.147 9 C -0.116 4.116 10 H 0.140 0.860 11 C 0.313 3.687 12 O -0.465 6.465 13 N -0.346 5.346 14 C -0.045 4.045 15 C -0.036 4.036 16 O -0.279 6.279 17 C 0.038 3.962 18 C 0.028 3.972 19 N -0.360 5.360 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.605 5.605 24 Si 0.811 3.189 25 H -0.199 1.199 26 H -0.219 1.219 27 H -0.203 1.203 28 C 0.008 3.992 29 C -0.016 4.016 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.142 0.858 43 H 0.154 0.846 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.023 0.977 47 H 0.056 0.944 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.206 -5.520 -22.738 24.208 hybrid contribution -0.171 1.153 1.437 1.851 sum -6.377 -4.367 -21.301 22.660 Atomic orbital electron populations 1.22843 0.80013 1.03439 1.00088 1.87814 1.20992 1.28116 1.95200 1.21989 0.92489 0.84551 0.96344 0.93296 1.21981 1.02472 0.97896 0.94369 1.21545 0.96364 0.95756 1.01868 1.21557 0.98012 1.02702 0.92684 1.21505 1.00566 0.92737 0.99848 1.21509 0.99296 1.00287 0.90545 0.85989 1.21159 0.81865 0.76337 0.89372 1.90634 1.30750 1.57589 1.67490 1.48277 1.18106 1.50995 1.17219 1.22674 0.81189 1.04024 0.96585 1.23173 1.00073 0.96693 0.83676 1.87879 1.38385 1.66530 1.35155 1.23056 0.84928 0.96171 0.92058 1.22489 0.94820 0.93859 0.86049 1.46167 1.60480 1.07726 1.21624 1.19418 1.25107 0.94656 0.97264 0.89556 1.25680 1.02798 0.96074 1.01522 1.70029 1.51738 1.04033 1.34661 0.85085 0.78624 0.76648 0.78559 1.19920 1.21948 1.20289 1.22710 0.97659 0.90374 0.88407 1.21880 0.97228 0.99848 0.82634 0.88605 0.95473 0.92249 0.89777 0.90713 0.89219 0.92591 0.89470 0.90344 0.90922 0.93105 0.88119 0.85837 0.84606 0.94845 0.94018 0.97660 0.94365 0.91399 0.91395 0.90323 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.82 113.37 1.23 1.86 16 2 O -0.40 -9.71 9.97 -148.98 -1.49 -11.20 16 3 C 0.10 2.28 1.71 30.60 0.05 2.33 16 4 H 0.05 1.28 7.50 -2.39 -0.02 1.27 16 5 C -0.13 -1.85 5.54 30.59 0.17 -1.68 16 6 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 7 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 8 C -0.11 -2.22 5.10 30.58 0.16 -2.07 16 9 C -0.10 -2.13 1.47 -11.55 -0.02 -2.15 16 10 H 0.12 2.10 6.24 -2.39 -0.01 2.08 16 11 C 0.52 16.68 6.35 87.66 0.56 17.23 16 12 O -0.58 -23.75 15.76 -3.02 -0.05 -23.80 16 13 N -0.61 -18.55 3.03 -818.68 -2.48 -21.03 16 14 C 0.08 1.70 6.30 86.33 0.54 2.24 16 15 C 0.04 1.16 6.88 72.06 0.50 1.66 16 16 O -0.36 -13.85 10.52 -148.98 -1.57 -15.42 16 17 C 0.08 3.23 1.21 -10.63 -0.01 3.21 16 18 C 0.15 8.02 6.64 86.31 0.57 8.59 16 19 N -0.63 -34.86 3.70 -729.28 -2.70 -37.56 16 20 C -0.24 -13.98 10.70 84.03 0.90 -13.08 16 21 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 22 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 23 N -0.96 -60.34 11.39 21.65 0.25 -60.10 16 24 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 28 C 0.13 5.74 8.33 86.30 0.72 6.46 16 29 C 0.11 3.71 5.76 86.04 0.50 4.20 16 30 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.03 0.62 8.09 -2.38 -0.02 0.60 16 32 H 0.06 0.88 7.87 -2.39 -0.02 0.86 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 0.96 7.87 -2.39 -0.02 0.94 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.54 8.01 -2.38 -0.02 1.52 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.12 1.91 5.52 -2.38 -0.01 1.90 16 43 H 0.14 2.89 8.14 -2.38 -0.02 2.87 16 44 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 45 H 0.04 2.43 6.31 -2.38 -0.02 2.41 16 46 H 0.01 0.32 7.92 -2.39 -0.02 0.30 16 47 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.07 2.67 8.09 -2.39 -0.02 2.65 16 49 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 50 H 0.08 3.07 6.86 -2.39 -0.02 3.05 16 51 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -80.93 392.59 1.58 -79.35 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.90 Total: 17.70 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 6.69 Total: 22.64 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.94 Total: -118.69 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -3.10 Total: -50.42 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -80.93 1.58 -79.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053547468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.537 kcal (2) G-P(sol) polarization free energy of solvation -80.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds