Wall clock time and date at job start Tue Mar 31 2020 21:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 113.99903 * 2 1 4 4 H 1.08992 * 109.57106 * 29.84169 * 3 2 1 5 5 C 1.53097 * 109.52074 * 269.68627 * 3 2 1 6 6 O 1.42901 * 109.41143 * 182.48075 * 5 3 2 7 7 C 1.42903 * 114.09546 * 61.16358 * 6 5 3 8 8 C 1.53098 * 109.41561 * 298.83914 * 7 6 5 9 9 C 1.53170 * 109.16169 * 57.60770 * 8 7 6 10 10 H 1.09000 * 109.54768 * 62.97985 * 9 8 7 11 11 C 1.53002 * 109.54308 * 183.15747 * 9 8 7 12 12 C 1.50697 * 109.46830 * 295.00012 * 11 9 8 13 13 O 1.21285 * 120.00386 * 359.97438 * 12 11 9 14 14 N 1.34782 * 120.00041 * 180.02562 * 12 11 9 15 15 C 1.47384 * 135.85387 * 359.62954 * 14 12 11 16 16 C 1.52067 * 87.41417 * 154.38935 * 15 14 12 17 17 C 1.47389 * 135.85234 * 180.02562 * 14 12 11 18 18 C 1.53510 * 117.21309 * 267.28173 * 16 15 14 19 19 C 1.54628 * 102.70375 * 262.92846 * 18 16 15 20 20 N 1.47145 * 107.37516 * 339.38212 * 19 18 16 21 21 C 1.36944 * 125.58194 * 179.11995 * 20 19 18 22 22 H 1.07997 * 120.00403 * 174.73579 * 21 20 19 23 23 C 1.38813 * 119.99596 * 354.73749 * 21 20 19 24 24 N 1.31623 * 120.00291 * 7.05712 * 23 21 20 25 25 Si 1.86799 * 119.99884 * 187.04985 * 23 21 20 26 26 H 1.48498 * 109.46927 * 94.99111 * 25 23 21 27 27 H 1.48503 * 109.47285 * 214.99047 * 25 23 21 28 28 H 1.48497 * 109.47254 * 334.99237 * 25 23 21 29 29 C 1.47750 * 108.84343 * 359.09055 * 20 19 18 30 30 H 1.08997 * 109.47413 * 60.00151 * 1 2 3 31 31 H 1.09007 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47401 * 299.99979 * 1 2 3 33 33 H 1.09000 * 109.48102 * 62.50364 * 5 3 2 34 34 H 1.08993 * 109.49042 * 302.47239 * 5 3 2 35 35 H 1.08999 * 109.48192 * 178.85254 * 7 6 5 36 36 H 1.09000 * 109.49381 * 58.82668 * 7 6 5 37 37 H 1.09002 * 109.51511 * 297.70606 * 8 7 6 38 38 H 1.08995 * 109.57499 * 177.55206 * 8 7 6 39 39 H 1.09006 * 109.47488 * 175.00170 * 11 9 8 40 40 H 1.09004 * 109.47286 * 54.99853 * 11 9 8 41 41 H 1.09002 * 113.54475 * 269.00356 * 15 14 12 42 42 H 1.08999 * 113.54077 * 39.67557 * 15 14 12 43 43 H 1.09004 * 113.54347 * 320.31635 * 17 14 12 44 44 H 1.08999 * 113.54600 * 90.99961 * 17 14 12 45 45 H 1.09004 * 110.76864 * 21.23346 * 18 16 15 46 46 H 1.09007 * 110.76639 * 144.44065 * 18 16 15 47 47 H 1.08996 * 109.86723 * 98.83627 * 19 18 16 48 48 H 1.09007 * 109.86814 * 219.80516 * 19 18 16 49 49 H 0.96995 * 119.99836 * 179.97438 * 24 23 21 50 50 H 1.09004 * 110.40896 * 263.50454 * 29 20 19 51 51 H 1.09001 * 110.40804 * 141.07527 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 0.5110 5 6 2.2255 1.7697 -1.4430 6 8 2.8595 3.0503 -1.4403 7 6 4.1470 3.0627 -0.8204 8 6 4.0089 2.6504 0.6476 9 6 3.3606 1.2647 0.7218 10 1 4.0098 0.5321 0.2422 11 6 3.1465 0.8776 2.1864 12 6 4.4827 0.7286 2.8671 13 8 5.5056 0.9134 2.2422 14 7 4.5412 0.3890 4.1701 15 6 3.5616 0.0968 5.2318 16 6 4.6401 -0.7405 5.9012 17 6 5.6124 0.1552 5.1551 18 6 4.6746 -2.2383 5.5667 19 6 3.9032 -2.8688 6.7493 20 7 3.9293 -1.9005 7.8569 21 6 3.3406 -2.0742 9.0811 22 1 3.4872 -1.3405 9.8599 23 6 2.5554 -3.1935 9.3211 24 7 2.4882 -4.1548 8.4245 25 14 1.5942 -3.3355 10.9165 26 1 0.2082 -2.8463 10.7045 27 1 1.5572 -4.7562 11.3474 28 1 2.2530 -2.5170 11.9658 29 6 4.6951 -0.7104 7.4325 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.2628 1.8417 -1.9491 34 1 2.8579 1.0520 -1.9653 35 1 4.5686 4.0662 -0.8781 36 1 4.8049 2.3619 -1.3344 37 1 3.3840 3.3735 1.1716 38 1 4.9946 2.6168 1.1117 39 1 2.6055 -0.0674 2.2372 40 1 2.5684 1.6545 2.6869 41 1 3.2706 0.9744 5.8093 42 1 2.7070 -0.4855 4.8874 43 1 6.4705 -0.3786 4.7466 44 1 5.8954 1.0490 5.7110 45 1 4.1647 -2.4356 4.6236 46 1 5.7012 -2.6032 5.5328 47 1 2.8727 -3.0678 6.4553 48 1 4.3870 -3.7967 7.0545 49 1 1.9398 -4.9370 8.5923 50 1 5.7269 -0.7795 7.7771 51 1 4.2269 0.1980 7.8118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072810221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:51 Heat of formation + Delta-G solvation = -62.593574 kcal Electronic energy + Delta-G solvation = -30542.962674 eV Core-core repulsion = 26444.597633 eV Total energy + Delta-G solvation = -4098.365041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.80332 -40.09717 -38.31721 -37.55565 -35.70603 -34.33372 -32.25805 -30.74636 -30.13941 -29.09051 -28.22431 -26.89526 -25.99803 -25.75954 -24.03229 -23.39231 -23.06048 -20.54645 -20.31071 -19.25019 -18.30311 -17.34510 -16.89813 -16.71795 -16.55364 -16.12519 -15.84851 -15.75446 -15.33946 -15.05539 -14.70911 -14.52020 -14.32144 -13.88208 -13.73916 -13.50361 -13.25178 -12.94280 -12.78893 -12.41965 -12.38312 -12.20346 -11.94714 -11.89659 -11.86002 -11.54963 -11.21416 -11.05398 -10.99875 -10.91896 -10.71545 -10.67755 -10.42837 -10.32722 -10.20387 -10.11744 -9.90392 -9.69993 -9.65244 -9.33027 -8.60957 -8.54349 -6.87068 -5.76008 -3.08610 2.70394 2.91044 3.23869 3.37390 3.42962 3.44993 3.75315 4.25708 4.38746 4.44103 4.51100 4.59870 4.69847 4.77944 4.90003 4.95881 5.00384 5.06444 5.08117 5.16974 5.24679 5.26837 5.38209 5.41363 5.43567 5.46042 5.52549 5.57331 5.61978 5.63811 5.67916 5.78357 5.79616 5.81506 5.93672 5.98857 6.05471 6.16144 6.20864 6.43854 6.50384 6.63929 6.67888 6.68979 7.00041 7.52098 7.58871 7.79042 7.86357 8.21040 8.23826 9.17667 9.77972 10.43984 11.35909 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.002467 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.495496 B =11347.712850 C =12368.317845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.071 0.929 5 C 0.043 3.957 6 O -0.381 6.381 7 C 0.059 3.941 8 C -0.154 4.154 9 C -0.068 4.068 10 H 0.089 0.911 11 C -0.128 4.128 12 C 0.542 3.458 13 O -0.550 6.550 14 N -0.643 5.643 15 C 0.120 3.880 16 C -0.105 4.105 17 C 0.118 3.882 18 C -0.116 4.116 19 C 0.179 3.821 20 N -0.604 5.604 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.153 3.847 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.042 0.958 49 H 0.252 0.748 50 H 0.026 0.974 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 12.517 -17.317 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.001 3.999 4 H 0.089 0.911 5 C -0.034 4.034 6 O -0.299 6.299 7 C -0.018 4.018 8 C -0.191 4.191 9 C -0.087 4.087 10 H 0.107 0.893 11 C -0.167 4.167 12 C 0.333 3.667 13 O -0.429 6.429 14 N -0.378 5.378 15 C -0.003 4.003 16 C -0.107 4.107 17 C -0.005 4.005 18 C -0.154 4.154 19 C 0.054 3.946 20 N -0.331 5.331 21 C -0.358 4.358 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.566 5.566 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.026 3.974 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.044 0.956 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.512 12.498 -17.853 21.799 hybrid contribution -0.771 -0.215 1.077 1.342 sum -1.283 12.283 -16.776 20.831 Atomic orbital electron populations 1.22852 0.80799 1.03124 1.00055 1.87950 1.19839 1.26800 1.94953 1.22844 0.95316 0.85297 0.96407 0.91142 1.22999 0.98539 0.85805 0.96079 1.87932 1.32681 1.29973 1.79346 1.22660 0.84530 1.02314 0.92258 1.22414 1.03696 0.95398 0.97626 1.21030 0.94982 0.98544 0.94178 0.89276 1.21590 0.95406 1.04442 0.95291 1.20144 0.91347 0.75384 0.79834 1.90635 1.36898 1.51566 1.63763 1.49878 1.12111 1.68360 1.07452 1.22884 0.93918 0.97978 0.85490 1.22184 0.95204 0.95913 0.97387 1.22764 0.92707 0.98113 0.86886 1.22453 1.00980 0.91929 1.00089 1.21224 0.97853 0.91529 0.83987 1.44545 1.61770 1.14309 1.12493 1.19046 1.22617 1.05669 0.88423 0.90387 1.24817 1.00299 0.96824 0.98353 1.69975 1.43149 1.08788 1.34732 0.86133 0.80249 0.76955 0.82641 1.21643 1.21803 1.20642 1.21145 0.95532 0.91726 0.88949 0.94087 0.89286 0.93718 0.88911 0.92178 0.88596 0.92757 0.91449 0.88060 0.88022 0.89307 0.89578 0.90132 0.90537 0.89904 0.92119 0.91857 0.93365 0.94011 0.93736 0.95646 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.31 16 2 O -0.38 -3.91 9.75 -35.23 -0.34 -4.25 16 3 C 0.06 0.57 2.21 -26.59 -0.06 0.52 16 4 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 5 C 0.04 0.40 6.47 37.21 0.24 0.64 16 6 O -0.38 -3.98 10.77 -35.23 -0.38 -4.36 16 7 C 0.06 0.55 6.84 37.21 0.25 0.80 16 8 C -0.15 -1.57 5.12 -26.59 -0.14 -1.71 16 9 C -0.07 -0.75 1.64 -90.44 -0.15 -0.89 16 10 H 0.09 1.12 7.96 -51.93 -0.41 0.71 16 11 C -0.13 -1.45 4.94 -27.88 -0.14 -1.59 16 12 C 0.54 7.79 7.81 -10.98 -0.09 7.70 16 13 O -0.55 -9.28 14.75 5.55 0.08 -9.19 16 14 N -0.64 -9.11 3.70 -185.74 -0.69 -9.79 16 15 C 0.12 1.68 7.78 -7.35 -0.06 1.62 16 16 C -0.11 -1.67 1.06 -155.21 -0.16 -1.84 16 17 C 0.12 1.65 8.03 -7.47 -0.06 1.59 16 18 C -0.12 -2.08 6.41 -25.61 -0.16 -2.24 16 19 C 0.18 4.13 5.40 -2.83 -0.02 4.12 16 20 N -0.60 -14.55 3.41 -170.53 -0.58 -15.13 16 21 C -0.23 -6.12 10.26 -15.06 -0.15 -6.27 16 22 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 23 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 24 N -0.92 -26.24 10.35 55.49 0.57 -25.67 16 25 Si 0.91 21.47 29.56 -169.99 -5.02 16.44 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 C 0.15 2.87 6.70 -3.22 -0.02 2.85 16 30 H 0.04 0.25 7.96 -51.93 -0.41 -0.16 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.09 0.72 7.96 -51.93 -0.41 0.30 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.21 6.03 -51.93 -0.31 0.90 16 39 H 0.10 1.19 7.66 -51.93 -0.40 0.79 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.09 8.06 -51.93 -0.42 0.68 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 46 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 47 H 0.05 1.24 7.30 -51.93 -0.38 0.86 16 48 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 49 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 50 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -31.37 398.77 -9.06 -40.42 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -9.00 Total: -0.81 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 0.29 Total: 6.32 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.69 Total: -50.59 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.64 Total: -17.80 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.37 -9.06 -40.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072810221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.169 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds