Wall clock time and date at job start Tue Mar 31 2020 21:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00120 * 2 1 4 4 H 1.09003 * 109.57615 * 30.15605 * 3 2 1 5 5 C 1.53096 * 109.52094 * 270.00221 * 3 2 1 6 6 O 1.42908 * 109.41214 * 297.69917 * 5 3 2 7 7 C 1.42897 * 114.09789 * 298.84248 * 6 5 3 8 8 C 1.53090 * 109.41529 * 61.15937 * 7 6 5 9 9 C 1.53168 * 109.16383 * 302.38908 * 8 7 6 10 10 H 1.08999 * 109.61827 * 297.06701 * 9 8 7 11 11 C 1.53002 * 109.54666 * 176.84692 * 9 8 7 12 12 C 1.50704 * 109.47013 * 65.44041 * 11 9 8 13 13 O 1.21279 * 119.99660 * 0.02562 * 12 11 9 14 14 N 1.34776 * 120.00152 * 179.97438 * 12 11 9 15 15 C 1.47352 * 135.87570 * 359.64192 * 14 12 11 16 16 C 1.52264 * 87.47250 * 154.21654 * 15 14 12 17 17 C 1.47349 * 135.87970 * 180.02562 * 14 12 11 18 18 C 1.53721 * 116.39495 * 142.36390 * 16 15 14 19 19 C 1.55185 * 101.38148 * 165.09712 * 18 16 15 20 20 N 1.47548 * 105.03660 * 324.50832 * 19 18 16 21 21 C 1.36937 * 125.66064 * 203.91133 * 20 19 18 22 22 H 1.07993 * 119.99856 * 179.97438 * 21 20 19 23 23 C 1.38808 * 119.99945 * 359.97438 * 21 20 19 24 24 N 1.31620 * 120.00135 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99983 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46952 * 90.00025 * 25 23 21 27 27 H 1.48498 * 109.46988 * 209.99971 * 25 23 21 28 28 H 1.48498 * 109.47079 * 329.99856 * 25 23 21 29 29 C 1.47402 * 108.67902 * 23.89593 * 20 19 18 30 30 H 1.09002 * 109.46929 * 300.00095 * 1 2 3 31 31 H 1.08995 * 109.47288 * 59.99925 * 1 2 3 32 32 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.48033 * 57.68669 * 5 3 2 34 34 H 1.09001 * 109.48095 * 177.71951 * 5 3 2 35 35 H 1.09002 * 109.48246 * 301.17405 * 7 6 5 36 36 H 1.09006 * 109.47919 * 181.14281 * 7 6 5 37 37 H 1.09002 * 109.52149 * 182.47952 * 8 7 6 38 38 H 1.09006 * 109.57554 * 62.32651 * 8 7 6 39 39 H 1.08995 * 109.47705 * 185.44271 * 11 9 8 40 40 H 1.09003 * 109.47025 * 305.44507 * 11 9 8 41 41 H 1.09004 * 113.53355 * 268.84070 * 15 14 12 42 42 H 1.08997 * 113.53799 * 39.49107 * 15 14 12 43 43 H 1.09008 * 113.53339 * 320.50586 * 17 14 12 44 44 H 1.08996 * 113.53579 * 91.15594 * 17 14 12 45 45 H 1.08988 * 111.04251 * 283.12661 * 18 16 15 46 46 H 1.09004 * 111.03745 * 47.07665 * 18 16 15 47 47 H 1.08998 * 110.32302 * 205.61827 * 19 18 16 48 48 H 1.08998 * 110.32558 * 83.40631 * 19 18 16 49 49 H 0.97005 * 120.00010 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.99390 * 238.51398 * 29 20 19 51 51 H 1.09010 * 110.02759 * 117.21324 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3476 2.0002 0.5159 5 6 2.2183 1.7727 -1.4430 6 8 3.1328 0.8929 -2.1000 7 6 4.4305 0.8485 -1.5034 8 6 4.3113 0.3440 -0.0629 9 6 3.3643 1.2629 0.7149 10 1 3.7844 2.2676 0.7602 11 6 3.1770 0.7221 2.1338 12 6 4.4864 0.7956 2.8763 13 8 5.4721 1.2375 2.3249 14 7 4.5618 0.3712 4.1533 15 6 3.6233 -0.2002 5.1352 16 6 4.8253 -0.8548 5.8023 17 6 5.6169 0.2829 5.1781 18 6 4.8058 -0.9150 7.3382 19 6 5.9267 -1.9510 7.6183 20 7 5.8300 -2.9271 6.5161 21 6 6.2676 -4.2240 6.5575 22 1 6.1499 -4.8615 5.6938 23 6 6.8625 -4.7193 7.7097 24 7 7.0065 -3.9422 8.7623 25 14 7.4589 -6.4887 7.7665 26 1 8.8704 -6.5501 7.3094 27 1 7.3667 -6.9976 9.1585 28 1 6.6136 -7.3247 6.8768 29 6 5.1838 -2.2747 5.3631 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.2638 1.7640 -1.9691 34 1 2.6240 2.7844 -1.4425 35 1 4.8652 1.8481 -1.5037 36 1 5.0696 0.1739 -2.0731 37 1 5.2943 0.3512 0.4081 38 1 3.9150 -0.6714 -0.0632 39 1 2.4297 1.3203 2.6551 40 1 2.8439 -0.3147 2.0865 41 1 3.1348 0.5495 5.7577 42 1 2.9217 -0.9134 4.7027 43 1 6.5841 -0.0261 4.7814 44 1 5.6826 1.1667 5.8125 45 1 5.0519 0.0545 7.7710 46 1 3.8428 -1.2719 7.7036 47 1 5.7567 -2.4431 8.5760 48 1 6.9023 -1.4650 7.6094 49 1 7.4226 -4.2882 9.5673 50 1 4.2806 -2.8181 5.0853 51 1 5.8725 -2.2410 4.5188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072810222.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:54 Heat of formation + Delta-G solvation = -58.440574 kcal Electronic energy + Delta-G solvation = -30631.770165 eV Core-core repulsion = 26533.585212 eV Total energy + Delta-G solvation = -4098.184954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.80223 -40.10700 -38.30917 -37.20997 -35.69313 -34.26953 -32.27247 -30.76261 -30.16705 -29.13182 -27.94272 -26.87338 -26.04374 -25.83913 -23.96897 -23.59753 -23.01919 -20.38888 -20.23374 -19.20053 -18.20142 -17.17728 -16.93249 -16.74642 -16.60057 -16.07921 -15.76382 -15.69834 -15.40203 -15.03245 -14.76506 -14.40723 -14.21828 -13.99082 -13.75322 -13.46846 -13.05020 -12.92900 -12.70912 -12.49433 -12.38709 -12.17973 -12.06165 -11.73453 -11.59993 -11.54746 -11.22133 -11.11554 -10.98546 -10.92636 -10.79682 -10.54265 -10.46803 -10.26621 -10.10220 -10.04575 -9.82326 -9.70843 -9.48220 -9.26678 -8.66438 -8.54138 -6.85828 -5.66992 -3.08433 2.71670 2.90284 3.37899 3.40063 3.45250 3.46811 3.78275 4.24092 4.42792 4.45350 4.50383 4.59471 4.66433 4.79624 4.92328 4.98078 5.03206 5.08487 5.12246 5.19579 5.21615 5.23699 5.33142 5.42109 5.44400 5.47683 5.49386 5.52938 5.56344 5.64665 5.72962 5.76454 5.83627 5.92290 5.95892 6.04852 6.15232 6.24957 6.27966 6.49607 6.54128 6.69396 6.74115 6.81332 7.08491 7.48278 7.60935 7.82845 7.86848 8.24497 8.33580 9.20466 9.80762 10.45336 11.37136 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.002414 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.803506 B =11594.505014 C =11968.556807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.057 3.943 4 H 0.069 0.931 5 C 0.043 3.957 6 O -0.375 6.375 7 C 0.062 3.938 8 C -0.152 4.152 9 C -0.067 4.067 10 H 0.089 0.911 11 C -0.125 4.125 12 C 0.540 3.460 13 O -0.546 6.546 14 N -0.643 5.643 15 C 0.112 3.888 16 C -0.103 4.103 17 C 0.121 3.879 18 C -0.129 4.129 19 C 0.154 3.846 20 N -0.604 5.604 21 C -0.221 4.221 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.923 5.923 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.166 3.834 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.107 0.893 48 H 0.013 0.987 49 H 0.252 0.748 50 H 0.029 0.971 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 14.308 -14.241 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.285 6.285 3 C -0.001 4.001 4 H 0.087 0.913 5 C -0.035 4.035 6 O -0.293 6.293 7 C -0.015 4.015 8 C -0.189 4.189 9 C -0.086 4.086 10 H 0.107 0.893 11 C -0.164 4.164 12 C 0.331 3.669 13 O -0.425 6.425 14 N -0.378 5.378 15 C -0.011 4.011 16 C -0.104 4.104 17 C -0.001 4.001 18 C -0.168 4.168 19 C 0.029 3.971 20 N -0.330 5.330 21 C -0.350 4.350 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.572 5.572 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.040 3.960 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.125 0.875 48 H 0.031 0.969 49 H 0.063 0.937 50 H 0.047 0.953 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.189 14.178 -14.797 24.370 hybrid contribution 0.099 -0.402 0.364 0.551 sum -13.090 13.776 -14.434 23.863 Atomic orbital electron populations 1.22810 0.81419 1.02943 0.99606 1.88012 1.19128 1.26522 1.94886 1.22868 0.95149 0.85859 0.96212 0.91305 1.23015 0.94364 0.93113 0.92997 1.87943 1.22332 1.65418 1.53611 1.22615 0.84322 1.00621 0.93898 1.22290 1.01521 0.99865 0.95272 1.21047 0.93681 1.00902 0.92958 0.89277 1.21560 0.95260 1.04582 0.95043 1.20187 0.90619 0.76287 0.79845 1.90652 1.38548 1.46600 1.66673 1.49843 1.15159 1.62813 1.09995 1.23004 0.94202 0.95895 0.88027 1.22180 0.94978 0.95807 0.97484 1.22847 0.93553 0.97054 0.86686 1.22774 1.01931 1.00521 0.91615 1.21973 0.92263 0.87653 0.95227 1.44610 1.69829 1.09102 1.09505 1.19070 1.31696 0.85749 0.98458 0.90499 1.24774 1.01237 0.98436 0.96184 1.69791 1.49369 1.34321 1.03678 0.86070 0.78652 0.83950 0.76829 1.21633 1.21647 1.20676 1.20723 0.95766 0.88191 0.91348 0.94152 0.94269 0.89504 0.88990 0.92387 0.93324 0.88801 0.88806 0.90632 0.89471 0.88023 0.89641 0.90325 0.90231 0.89966 0.91897 0.91350 0.87550 0.96901 0.93724 0.95339 0.95804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.37 -3.76 9.08 -42.72 -0.39 -4.14 16 3 C 0.06 0.51 2.43 -26.59 -0.06 0.44 16 4 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 5 C 0.04 0.37 6.48 37.21 0.24 0.61 16 6 O -0.37 -4.34 10.70 -42.72 -0.46 -4.80 16 7 C 0.06 0.66 6.84 37.20 0.25 0.92 16 8 C -0.15 -1.82 4.97 -26.60 -0.13 -1.95 16 9 C -0.07 -0.71 1.75 -90.44 -0.16 -0.86 16 10 H 0.09 0.95 7.95 -51.93 -0.41 0.54 16 11 C -0.12 -1.36 4.75 -27.88 -0.13 -1.49 16 12 C 0.54 7.81 7.82 -10.98 -0.09 7.73 16 13 O -0.55 -9.55 14.78 5.56 0.08 -9.46 16 14 N -0.64 -9.18 3.70 -185.45 -0.69 -9.86 16 15 C 0.11 1.39 7.81 -7.45 -0.06 1.33 16 16 C -0.10 -1.66 1.05 -155.09 -0.16 -1.82 16 17 C 0.12 1.85 7.89 -7.58 -0.06 1.79 16 18 C -0.13 -2.19 6.49 -25.20 -0.16 -2.36 16 19 C 0.15 3.56 5.90 -2.31 -0.01 3.55 16 20 N -0.60 -15.14 3.41 -170.38 -0.58 -15.72 16 21 C -0.22 -6.12 10.28 -15.06 -0.15 -6.27 16 22 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 24 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 25 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 C 0.17 3.38 6.79 -3.61 -0.02 3.35 16 30 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 31 H 0.04 0.23 7.83 -51.93 -0.41 -0.17 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.67 7.83 -51.93 -0.41 0.27 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.31 6.07 -51.93 -0.32 0.99 16 38 H 0.07 0.99 7.83 -51.93 -0.41 0.58 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.15 7.78 -51.93 -0.40 0.74 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 43 H 0.08 1.39 8.07 -51.92 -0.42 0.97 16 44 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 45 H 0.06 0.92 7.98 -51.94 -0.41 0.50 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.11 2.79 5.89 -51.93 -0.31 2.48 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 50 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 51 H 0.02 0.52 7.92 -51.92 -0.41 0.11 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -32.69 396.69 -9.14 -41.84 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.91 Total: -0.71 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 0.28 Total: 5.87 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.71 Total: -51.51 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.76 Total: -18.41 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.69 -9.14 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072810222.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.604 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds