Wall clock time and date at job start Tue Mar 31 2020 21:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00120 * 2 1 4 4 H 1.09003 * 109.57615 * 30.15605 * 3 2 1 5 5 C 1.53096 * 109.52094 * 270.00221 * 3 2 1 6 6 O 1.42908 * 109.41214 * 297.69917 * 5 3 2 7 7 C 1.42897 * 114.09789 * 298.84248 * 6 5 3 8 8 C 1.53090 * 109.41529 * 61.15937 * 7 6 5 9 9 C 1.53168 * 109.16383 * 302.38908 * 8 7 6 10 10 H 1.08999 * 109.61827 * 297.06701 * 9 8 7 11 11 C 1.53002 * 109.54666 * 176.84692 * 9 8 7 12 12 C 1.50704 * 109.47013 * 65.44041 * 11 9 8 13 13 O 1.21279 * 119.99660 * 0.02562 * 12 11 9 14 14 N 1.34776 * 120.00152 * 179.97438 * 12 11 9 15 15 C 1.47352 * 135.87570 * 359.64192 * 14 12 11 16 16 C 1.52264 * 87.47250 * 154.21654 * 15 14 12 17 17 C 1.47349 * 135.87970 * 180.02562 * 14 12 11 18 18 C 1.53721 * 116.39495 * 142.36390 * 16 15 14 19 19 C 1.55185 * 101.38148 * 165.09712 * 18 16 15 20 20 N 1.47548 * 105.03660 * 324.50832 * 19 18 16 21 21 C 1.36937 * 125.66064 * 203.91133 * 20 19 18 22 22 H 1.07993 * 119.99856 * 179.97438 * 21 20 19 23 23 C 1.38808 * 119.99945 * 359.97438 * 21 20 19 24 24 N 1.31620 * 120.00135 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99983 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46952 * 90.00025 * 25 23 21 27 27 H 1.48498 * 109.46988 * 209.99971 * 25 23 21 28 28 H 1.48498 * 109.47079 * 329.99856 * 25 23 21 29 29 C 1.47402 * 108.67902 * 23.89593 * 20 19 18 30 30 H 1.09002 * 109.46929 * 300.00095 * 1 2 3 31 31 H 1.08995 * 109.47288 * 59.99925 * 1 2 3 32 32 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.48033 * 57.68669 * 5 3 2 34 34 H 1.09001 * 109.48095 * 177.71951 * 5 3 2 35 35 H 1.09002 * 109.48246 * 301.17405 * 7 6 5 36 36 H 1.09006 * 109.47919 * 181.14281 * 7 6 5 37 37 H 1.09002 * 109.52149 * 182.47952 * 8 7 6 38 38 H 1.09006 * 109.57554 * 62.32651 * 8 7 6 39 39 H 1.08995 * 109.47705 * 185.44271 * 11 9 8 40 40 H 1.09003 * 109.47025 * 305.44507 * 11 9 8 41 41 H 1.09004 * 113.53355 * 268.84070 * 15 14 12 42 42 H 1.08997 * 113.53799 * 39.49107 * 15 14 12 43 43 H 1.09008 * 113.53339 * 320.50586 * 17 14 12 44 44 H 1.08996 * 113.53579 * 91.15594 * 17 14 12 45 45 H 1.08988 * 111.04251 * 283.12661 * 18 16 15 46 46 H 1.09004 * 111.03745 * 47.07665 * 18 16 15 47 47 H 1.08998 * 110.32302 * 205.61827 * 19 18 16 48 48 H 1.08998 * 110.32558 * 83.40631 * 19 18 16 49 49 H 0.97005 * 120.00010 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.99390 * 238.51398 * 29 20 19 51 51 H 1.09010 * 110.02759 * 117.21324 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3476 2.0002 0.5159 5 6 2.2183 1.7727 -1.4430 6 8 3.1328 0.8929 -2.1000 7 6 4.4305 0.8485 -1.5034 8 6 4.3113 0.3440 -0.0629 9 6 3.3643 1.2629 0.7149 10 1 3.7844 2.2676 0.7602 11 6 3.1770 0.7221 2.1338 12 6 4.4864 0.7956 2.8763 13 8 5.4721 1.2375 2.3249 14 7 4.5618 0.3712 4.1533 15 6 3.6233 -0.2002 5.1352 16 6 4.8253 -0.8548 5.8023 17 6 5.6169 0.2829 5.1781 18 6 4.8058 -0.9150 7.3382 19 6 5.9267 -1.9510 7.6183 20 7 5.8300 -2.9271 6.5161 21 6 6.2676 -4.2240 6.5575 22 1 6.1499 -4.8615 5.6938 23 6 6.8625 -4.7193 7.7097 24 7 7.0065 -3.9422 8.7623 25 14 7.4589 -6.4887 7.7665 26 1 8.8704 -6.5501 7.3094 27 1 7.3667 -6.9976 9.1585 28 1 6.6136 -7.3247 6.8768 29 6 5.1838 -2.2747 5.3631 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.2638 1.7640 -1.9691 34 1 2.6240 2.7844 -1.4425 35 1 4.8652 1.8481 -1.5037 36 1 5.0696 0.1739 -2.0731 37 1 5.2943 0.3512 0.4081 38 1 3.9150 -0.6714 -0.0632 39 1 2.4297 1.3203 2.6551 40 1 2.8439 -0.3147 2.0865 41 1 3.1348 0.5495 5.7577 42 1 2.9217 -0.9134 4.7027 43 1 6.5841 -0.0261 4.7814 44 1 5.6826 1.1667 5.8125 45 1 5.0519 0.0545 7.7710 46 1 3.8428 -1.2719 7.7036 47 1 5.7567 -2.4431 8.5760 48 1 6.9023 -1.4650 7.6094 49 1 7.4226 -4.2882 9.5673 50 1 4.2806 -2.8181 5.0853 51 1 5.8725 -2.2410 4.5188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072810222.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:53 Heat of formation + Delta-G solvation = -80.104706 kcal Electronic energy + Delta-G solvation = -30632.709593 eV Core-core repulsion = 26533.585212 eV Total energy + Delta-G solvation = -4099.124381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.95614 -40.97771 -39.48562 -37.91610 -37.33179 -35.14175 -34.13339 -31.73947 -31.42134 -30.49664 -29.23111 -27.53427 -27.40480 -27.12255 -25.48710 -24.38517 -24.05636 -22.20332 -21.02664 -20.38845 -19.48483 -18.84426 -18.06906 -17.54088 -17.40859 -17.18088 -16.78985 -16.77776 -16.47282 -16.29719 -16.01705 -15.61560 -15.53120 -15.20110 -14.81062 -14.42681 -14.29853 -13.90024 -13.86848 -13.78095 -13.69728 -13.30901 -13.12930 -13.12348 -12.88641 -12.76826 -12.60422 -12.46176 -12.21484 -12.03903 -12.01361 -11.93671 -11.79507 -11.73571 -11.48500 -11.30191 -11.18781 -10.99728 -10.76072 -10.65536 -10.04988 -9.68640 -8.89146 -7.77876 -5.21943 1.46038 1.47563 1.56290 1.63299 1.82428 2.48638 2.74845 3.08133 3.24042 3.34565 3.41895 3.67235 3.69177 3.69362 3.77825 3.87606 4.02224 4.16224 4.18593 4.29155 4.34737 4.36652 4.44931 4.50665 4.55401 4.55711 4.58191 4.64793 4.65909 4.69382 4.73766 4.79121 4.82278 4.84909 4.92096 4.96899 4.97118 5.04495 5.11863 5.14976 5.17184 5.23089 5.33572 5.45887 5.68730 5.84355 6.14474 6.32731 6.42298 6.77937 7.11683 7.13876 7.77995 8.41367 9.23531 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.002414 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.803506 B =11594.505014 C =11968.556807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.062 3.938 4 H 0.099 0.901 5 C 0.034 3.966 6 O -0.395 6.395 7 C 0.064 3.936 8 C -0.148 4.148 9 C -0.067 4.067 10 H 0.089 0.911 11 C -0.113 4.113 12 C 0.533 3.467 13 O -0.585 6.585 14 N -0.647 5.647 15 C 0.131 3.869 16 C -0.102 4.102 17 C 0.118 3.882 18 C -0.107 4.107 19 C 0.152 3.848 20 N -0.627 5.627 21 C -0.240 4.240 22 H 0.075 0.925 23 C -0.064 4.064 24 N -0.946 5.946 25 Si 0.977 3.023 26 H -0.290 1.290 27 H -0.289 1.289 28 H -0.270 1.270 29 C 0.164 3.836 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.094 0.906 43 H 0.045 0.955 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.074 0.926 48 H -0.017 1.017 49 H 0.248 0.752 50 H 0.035 0.965 51 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.833 15.906 -14.575 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.004 3.996 4 H 0.116 0.884 5 C -0.042 4.042 6 O -0.314 6.314 7 C -0.012 4.012 8 C -0.185 4.185 9 C -0.086 4.086 10 H 0.107 0.893 11 C -0.152 4.152 12 C 0.326 3.674 13 O -0.466 6.466 14 N -0.381 5.381 15 C 0.009 3.991 16 C -0.104 4.104 17 C -0.004 4.004 18 C -0.146 4.146 19 C 0.027 3.973 20 N -0.353 5.353 21 C -0.370 4.370 22 H 0.093 0.907 23 C -0.257 4.257 24 N -0.596 5.596 25 Si 0.806 3.194 26 H -0.218 1.218 27 H -0.215 1.215 28 H -0.195 1.195 29 C 0.039 3.961 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.138 0.862 40 H 0.118 0.882 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.128 0.872 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.092 0.908 48 H 0.001 0.999 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -16.195 15.783 -15.143 27.216 hybrid contribution 1.076 -0.926 0.429 1.483 sum -15.119 14.857 -14.714 25.803 Atomic orbital electron populations 1.22966 0.79901 1.03477 1.00920 1.87984 1.20903 1.27395 1.95050 1.22866 0.94424 0.86097 0.96204 0.88362 1.23270 0.94543 0.93355 0.93067 1.87910 1.22742 1.66414 1.54331 1.22581 0.84527 1.01070 0.93060 1.22171 1.00479 0.99548 0.96341 1.21053 0.94530 1.00224 0.92792 0.89271 1.21549 0.93674 1.05060 0.94940 1.20893 0.91457 0.75449 0.79650 1.90640 1.40168 1.48379 1.67372 1.49917 1.15276 1.62724 1.10201 1.23082 0.92472 0.96467 0.87092 1.21998 0.98072 0.93397 0.96883 1.22864 0.92397 0.97751 0.87430 1.22586 0.99844 0.99882 0.92241 1.21807 0.93368 0.88597 0.93505 1.44931 1.69939 1.08875 1.11548 1.19397 1.31800 0.87281 0.98474 0.90739 1.25576 1.01820 1.02255 0.96005 1.70043 1.49940 1.35699 1.03888 0.85094 0.77896 0.79660 0.76778 1.21772 1.21542 1.19493 1.20810 0.94883 0.91039 0.89382 0.92478 0.93242 0.89502 0.87457 0.90846 0.92436 0.88771 0.91458 0.92392 0.86214 0.88244 0.85512 0.88776 0.93619 0.87235 0.88642 0.89899 0.90839 0.99939 0.94253 0.94710 0.98067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.39 -7.16 9.08 -141.82 -1.29 -8.44 16 3 C 0.06 0.92 2.43 30.69 0.07 1.00 16 4 H 0.10 0.89 7.79 -2.39 -0.02 0.87 16 5 C 0.03 0.52 6.48 72.01 0.47 0.98 16 6 O -0.40 -8.73 10.70 -141.82 -1.52 -10.25 16 7 C 0.06 1.36 6.84 72.01 0.49 1.86 16 8 C -0.15 -3.57 4.97 30.68 0.15 -3.42 16 9 C -0.07 -1.30 1.75 -10.68 -0.02 -1.32 16 10 H 0.09 1.74 7.95 -2.39 -0.02 1.72 16 11 C -0.11 -2.17 4.75 29.85 0.14 -2.02 16 12 C 0.53 14.69 7.82 87.66 0.69 15.38 16 13 O -0.58 -20.53 14.78 -3.03 -0.04 -20.58 16 14 N -0.65 -17.05 3.70 -859.02 -3.17 -20.22 16 15 C 0.13 2.70 7.81 83.71 0.65 3.36 16 16 C -0.10 -3.10 1.05 -52.54 -0.05 -3.15 16 17 C 0.12 3.49 7.89 83.62 0.66 4.15 16 18 C -0.11 -3.39 6.49 31.59 0.21 -3.19 16 19 C 0.15 7.20 5.90 86.93 0.51 7.72 16 20 N -0.63 -32.24 3.41 -692.95 -2.36 -34.61 16 21 C -0.24 -13.67 10.28 84.03 0.86 -12.81 16 22 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 23 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 24 N -0.95 -56.02 10.09 21.65 0.22 -55.80 16 25 Si 0.98 46.01 29.55 68.60 2.03 48.04 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 29 C 0.16 6.75 6.79 86.17 0.58 7.33 16 30 H 0.06 0.44 8.09 -2.39 -0.02 0.42 16 31 H 0.05 0.44 7.83 -2.39 -0.02 0.42 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 1.26 7.83 -2.39 -0.02 1.24 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.90 8.14 -2.38 -0.02 1.89 16 37 H 0.07 1.98 6.07 -2.39 -0.01 1.96 16 38 H 0.06 1.56 7.83 -2.38 -0.02 1.55 16 39 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 2.02 7.78 -2.39 -0.02 2.00 16 41 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 43 H 0.05 1.64 8.07 -2.38 -0.02 1.63 16 44 H 0.11 2.65 8.04 -2.39 -0.02 2.63 16 45 H 0.10 2.45 7.98 -2.39 -0.02 2.43 16 46 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.07 3.98 5.89 -2.39 -0.01 3.97 16 48 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 50 H 0.03 1.38 8.07 -2.39 -0.02 1.37 16 51 H 0.00 0.06 7.92 -2.38 -0.02 0.04 16 Total: -1.00 -75.66 396.69 1.87 -73.79 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.90 Total: 13.89 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 7.11 Total: 14.18 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -5.32 Total: -110.63 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -2.85 Total: -39.27 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -75.66 1.87 -73.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072810222.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.315 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds