Wall clock time and date at job start Tue Mar 31 2020 21:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99986 * 2 1 4 4 H 1.09004 * 110.91345 * 26.09931 * 3 2 1 5 5 C 1.55119 * 111.16272 * 262.17059 * 3 2 1 6 6 N 1.47423 * 104.94242 * 205.13083 * 5 3 2 7 7 C 1.36934 * 125.64929 * 203.96884 * 6 5 3 8 8 H 1.07998 * 120.00349 * 180.02562 * 7 6 5 9 9 C 1.38816 * 119.99578 * 0.03923 * 7 6 5 10 10 N 1.31610 * 120.00523 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99796 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47225 * 89.99992 * 11 9 7 13 13 H 1.48497 * 109.47343 * 210.00070 * 11 9 7 14 14 H 1.48499 * 109.47031 * 330.00180 * 11 9 7 15 15 C 1.47025 * 108.70198 * 24.00100 * 6 5 3 16 16 C 1.54321 * 107.27345 * 358.94246 * 15 6 5 17 17 H 1.08999 * 110.71832 * 96.34264 * 16 15 6 18 18 N 1.46500 * 110.71970 * 219.44395 * 16 15 6 19 19 C 1.34777 * 119.99726 * 271.15255 * 18 16 15 20 20 O 1.21278 * 120.00202 * 5.17290 * 19 18 16 21 21 C 1.50699 * 119.99804 * 185.16769 * 19 18 16 22 22 C 1.52992 * 109.54201 * 66.86982 * 21 19 18 23 23 C 1.52998 * 117.50247 * 59.82110 * 22 21 19 24 24 C 1.53000 * 60.00120 * 107.49169 * 23 22 21 25 25 C 1.53179 * 109.61680 * 187.08978 * 21 19 18 26 26 C 1.53094 * 109.16322 * 62.93126 * 25 21 19 27 27 O 1.42903 * 109.41576 * 57.60573 * 26 25 21 28 28 C 1.42900 * 114.10288 * 298.84329 * 27 26 25 29 29 C 1.53094 * 109.41244 * 61.15530 * 28 27 26 30 30 H 1.09007 * 109.47435 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47316 * 299.99597 * 1 2 3 32 32 H 1.08998 * 109.47703 * 60.00171 * 1 2 3 33 33 H 1.08997 * 110.41819 * 86.20092 * 5 3 2 34 34 H 1.09002 * 110.29972 * 324.00042 * 5 3 2 35 35 H 0.97003 * 120.00288 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.87959 * 239.52236 * 15 6 5 37 37 H 1.08998 * 110.00502 * 118.43153 * 15 6 5 38 38 H 0.97000 * 120.00017 * 91.16046 * 18 16 15 39 39 H 1.09010 * 115.56000 * 274.13286 * 22 21 19 40 40 H 1.08997 * 117.49657 * 359.97438 * 23 22 21 41 41 H 1.09000 * 117.49891 * 214.97937 * 23 22 21 42 42 H 1.08995 * 117.49922 * 107.49133 * 24 23 22 43 43 H 1.08998 * 117.49992 * 252.48750 * 24 23 22 44 44 H 1.08995 * 109.52551 * 182.83494 * 25 21 19 45 45 H 1.09004 * 109.51939 * 303.02991 * 25 21 19 46 46 H 1.09006 * 109.47763 * 297.62596 * 26 25 21 47 47 H 1.08996 * 109.49319 * 177.59696 * 26 25 21 48 48 H 1.08997 * 109.47957 * 301.17737 * 28 27 26 49 49 H 1.08994 * 109.49280 * 181.13982 * 28 27 26 50 50 H 1.08999 * 109.52600 * 182.48942 * 29 28 27 51 51 H 1.08998 * 109.57529 * 62.33027 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3331 2.0328 0.4479 5 6 2.4180 1.7369 -1.4331 6 7 3.4966 2.7233 -1.2407 7 6 3.8525 3.7007 -2.1312 8 1 4.6608 4.3772 -1.8962 9 6 3.1739 3.8222 -3.3361 10 7 2.1883 2.9983 -3.6224 11 14 3.6598 5.1551 -4.5514 12 1 4.6978 4.6292 -5.4741 13 1 2.4675 5.5709 -5.3330 14 1 4.2004 6.3247 -3.8133 15 6 4.1275 2.4832 0.0655 16 6 3.3824 1.3033 0.7243 17 1 3.9105 0.3665 0.5470 18 7 3.2107 1.5357 2.1605 19 6 4.1626 1.1350 3.0265 20 8 5.2019 0.6676 2.6115 21 6 3.9356 1.2680 4.5103 22 6 2.8124 0.3236 4.9428 23 6 3.0127 -1.1728 4.6947 24 6 3.0923 -0.6159 6.1175 25 6 5.2222 0.9118 5.2614 26 6 6.3187 1.9104 4.8815 27 8 5.8808 3.2359 5.1872 28 6 4.7082 3.6412 4.4781 29 6 3.5470 2.7122 4.8418 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.5729 2.1943 -1.9475 34 1 2.7847 0.8788 -1.9964 35 1 1.7139 3.0834 -4.4642 36 1 4.0383 3.3727 0.6892 37 1 5.1788 2.2290 -0.0693 38 1 2.4120 1.9779 2.4883 39 1 1.8013 0.7191 4.8446 40 1 3.9445 -1.4844 4.2228 41 1 2.1335 -1.7617 4.4332 42 1 2.2656 -0.8385 6.7921 43 1 4.0767 -0.5616 6.5823 44 1 5.0422 0.9597 6.3353 45 1 5.5364 -0.0955 4.9882 46 1 6.5266 1.8333 3.8142 47 1 7.2246 1.6877 5.4452 48 1 4.8950 3.5868 3.4057 49 1 4.4537 4.6652 4.7514 50 1 2.6632 2.9922 4.2687 51 1 3.3321 2.7961 5.9071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081985027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:33 Heat of formation + Delta-G solvation = -67.599568 kcal Electronic energy + Delta-G solvation = -32015.979059 eV Core-core repulsion = 27917.396942 eV Total energy + Delta-G solvation = -4098.582117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.19052 -38.84313 -37.73937 -37.29626 -35.92709 -34.19582 -33.02681 -31.76485 -31.03566 -28.84947 -27.37927 -26.15530 -26.00847 -24.29447 -23.87164 -22.93808 -21.74582 -21.43117 -20.66186 -20.03399 -19.10403 -17.24531 -16.85158 -16.58605 -16.49139 -15.97003 -15.63224 -15.35909 -15.02337 -14.86635 -14.54043 -14.48447 -14.32925 -13.97753 -13.89959 -13.39008 -13.21696 -12.92472 -12.50828 -12.36720 -12.22324 -11.98230 -11.85231 -11.70766 -11.46782 -11.30667 -11.29533 -11.05871 -11.02672 -10.85244 -10.80555 -10.73814 -10.54265 -10.33336 -10.20141 -9.93630 -9.84438 -9.62436 -9.38997 -9.03205 -8.72756 -8.67171 -6.92512 -5.71973 -3.15002 2.72967 3.20747 3.37575 3.42759 3.44258 3.62715 3.82440 4.08866 4.17995 4.42723 4.48036 4.56324 4.74106 4.81668 4.86440 4.88068 5.05156 5.15650 5.19177 5.38195 5.39358 5.42270 5.46023 5.46886 5.54114 5.57525 5.61938 5.64783 5.65429 5.67316 5.75396 5.79661 5.80470 5.90446 5.92458 5.93687 6.00252 6.03605 6.06326 6.19228 6.47624 6.66209 6.86882 7.13704 7.22480 7.53181 7.65863 7.70404 7.77280 8.24008 8.37951 9.13676 9.74079 10.36458 11.31789 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.003645 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.316140 B = 7680.575745 C = 9125.883936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.223 4.223 8 H 0.080 0.920 9 C -0.009 4.009 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.132 3.868 16 C 0.137 3.863 17 H 0.100 0.900 18 N -0.711 5.711 19 C 0.528 3.472 20 O -0.536 6.536 21 C -0.047 4.047 22 C -0.145 4.145 23 C -0.173 4.173 24 C -0.177 4.177 25 C -0.130 4.130 26 C 0.050 3.950 27 O -0.383 6.383 28 C 0.056 3.944 29 C -0.141 4.141 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.112 0.888 34 H 0.026 0.974 35 H 0.253 0.747 36 H 0.028 0.972 37 H 0.033 0.967 38 H 0.395 0.605 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.054 0.946 49 H 0.097 0.903 50 H 0.077 0.923 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 -4.875 19.995 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.016 3.984 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.747 3.253 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.005 3.995 16 C 0.032 3.968 17 H 0.118 0.882 18 N -0.361 5.361 19 C 0.313 3.687 20 O -0.413 6.413 21 C -0.050 4.050 22 C -0.163 4.163 23 C -0.209 4.209 24 C -0.213 4.213 25 C -0.168 4.168 26 C -0.027 4.027 27 O -0.302 6.302 28 C -0.021 4.021 29 C -0.179 4.179 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.229 0.771 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.072 0.928 49 H 0.115 0.885 50 H 0.095 0.905 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.796 -5.203 19.601 20.359 hybrid contribution -0.654 0.799 -0.746 1.274 sum -2.449 -4.403 18.855 19.517 Atomic orbital electron populations 1.22700 0.81677 1.01907 0.99859 1.87852 1.19124 1.27701 1.95060 1.24059 0.92602 0.83707 1.00089 0.91628 1.22318 0.94568 0.92070 0.89401 1.44296 1.37066 1.35647 1.15753 1.19095 1.13750 1.06267 0.96005 0.90210 1.24795 0.98471 0.99366 0.97846 1.69747 1.24441 1.38855 1.24081 0.86040 0.77350 0.80919 0.80999 1.21506 1.21618 1.20626 1.21585 0.95830 0.93990 0.88117 1.22158 0.96654 1.00031 0.77960 0.88236 1.46000 1.22395 1.60667 1.07020 1.20281 0.83432 0.77231 0.87741 1.90671 1.25976 1.45096 1.79525 1.20388 0.96268 0.96077 0.92278 1.22143 0.98368 0.91486 1.04310 1.22982 1.03830 0.95231 0.98905 1.23141 1.03473 1.03389 0.91340 1.22156 0.93854 1.00948 0.99809 1.22794 0.96240 0.81387 1.02234 1.87893 1.44030 1.31251 1.67026 1.22608 0.84709 0.98183 0.96580 1.22267 0.99318 0.92938 1.03414 0.90334 0.94893 0.93544 0.87015 0.95621 0.93600 0.95428 0.94947 0.77090 0.87229 0.88435 0.88572 0.88759 0.87991 0.90252 0.89983 0.90924 0.89035 0.92768 0.88466 0.90470 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.77 10.52 -35.23 -0.37 -7.14 16 3 C 0.05 1.03 3.17 -24.47 -0.08 0.95 16 4 H 0.07 1.14 7.69 -51.93 -0.40 0.74 16 5 C 0.14 3.42 5.63 -2.42 -0.01 3.41 16 6 N -0.60 -15.27 3.40 -169.94 -0.58 -15.84 16 7 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 10 N -0.92 -26.35 10.09 55.49 0.56 -25.79 16 11 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.13 2.84 7.00 -3.06 -0.02 2.82 16 16 C 0.14 2.53 2.96 -66.10 -0.20 2.33 16 17 H 0.10 2.05 7.70 -51.93 -0.40 1.65 16 18 N -0.71 -10.32 4.99 -52.03 -0.26 -10.58 16 19 C 0.53 7.65 4.68 -10.99 -0.05 7.59 16 20 O -0.54 -9.67 13.88 5.56 0.08 -9.59 16 21 C -0.05 -0.51 0.52 -155.48 -0.08 -0.59 16 22 C -0.14 -1.35 5.14 -90.62 -0.47 -1.82 16 23 C -0.17 -1.71 9.54 -26.73 -0.26 -1.97 16 24 C -0.18 -1.43 9.57 -26.73 -0.26 -1.68 16 25 C -0.13 -1.40 3.15 -26.59 -0.08 -1.48 16 26 C 0.05 0.61 6.56 37.21 0.24 0.86 16 27 O -0.38 -4.99 10.76 -35.23 -0.38 -5.37 16 28 C 0.06 0.64 6.62 37.21 0.25 0.89 16 29 C -0.14 -1.35 4.79 -26.59 -0.13 -1.48 16 30 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.03 0.58 8.03 -51.93 -0.42 0.16 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.39 4.78 7.40 -40.82 -0.30 4.48 16 39 H 0.11 0.91 8.12 -51.92 -0.42 0.49 16 40 H 0.10 1.14 7.68 -51.93 -0.40 0.74 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.79 5.83 -51.93 -0.30 0.49 16 44 H 0.08 0.73 6.79 -51.93 -0.35 0.38 16 45 H 0.08 0.93 7.13 -51.93 -0.37 0.56 16 46 H 0.07 1.08 6.08 -51.93 -0.32 0.77 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.05 0.73 7.38 -51.93 -0.38 0.35 16 49 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 0.64 7.04 -51.93 -0.37 0.28 16 51 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -31.65 390.73 -8.88 -40.53 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.51 Total: 6.36 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.29 Total: 4.74 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.28 Total: -52.21 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.67 Total: -22.10 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.65 -8.88 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081985027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.070 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds