Wall clock time and date at job start Tue Mar 31 2020 21:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99986 * 2 1 4 4 H 1.09004 * 110.91345 * 26.09931 * 3 2 1 5 5 C 1.55119 * 111.16272 * 262.17059 * 3 2 1 6 6 N 1.47423 * 104.94242 * 205.13083 * 5 3 2 7 7 C 1.36934 * 125.64929 * 203.96884 * 6 5 3 8 8 H 1.07998 * 120.00349 * 180.02562 * 7 6 5 9 9 C 1.38816 * 119.99578 * 0.03923 * 7 6 5 10 10 N 1.31610 * 120.00523 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99796 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47225 * 89.99992 * 11 9 7 13 13 H 1.48497 * 109.47343 * 210.00070 * 11 9 7 14 14 H 1.48499 * 109.47031 * 330.00180 * 11 9 7 15 15 C 1.47025 * 108.70198 * 24.00100 * 6 5 3 16 16 C 1.54321 * 107.27345 * 358.94246 * 15 6 5 17 17 H 1.08999 * 110.71832 * 96.34264 * 16 15 6 18 18 N 1.46500 * 110.71970 * 219.44395 * 16 15 6 19 19 C 1.34777 * 119.99726 * 271.15255 * 18 16 15 20 20 O 1.21278 * 120.00202 * 5.17290 * 19 18 16 21 21 C 1.50699 * 119.99804 * 185.16769 * 19 18 16 22 22 C 1.52992 * 109.54201 * 66.86982 * 21 19 18 23 23 C 1.52998 * 117.50247 * 59.82110 * 22 21 19 24 24 C 1.53000 * 60.00120 * 107.49169 * 23 22 21 25 25 C 1.53179 * 109.61680 * 187.08978 * 21 19 18 26 26 C 1.53094 * 109.16322 * 62.93126 * 25 21 19 27 27 O 1.42903 * 109.41576 * 57.60573 * 26 25 21 28 28 C 1.42900 * 114.10288 * 298.84329 * 27 26 25 29 29 C 1.53094 * 109.41244 * 61.15530 * 28 27 26 30 30 H 1.09007 * 109.47435 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47316 * 299.99597 * 1 2 3 32 32 H 1.08998 * 109.47703 * 60.00171 * 1 2 3 33 33 H 1.08997 * 110.41819 * 86.20092 * 5 3 2 34 34 H 1.09002 * 110.29972 * 324.00042 * 5 3 2 35 35 H 0.97003 * 120.00288 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.87959 * 239.52236 * 15 6 5 37 37 H 1.08998 * 110.00502 * 118.43153 * 15 6 5 38 38 H 0.97000 * 120.00017 * 91.16046 * 18 16 15 39 39 H 1.09010 * 115.56000 * 274.13286 * 22 21 19 40 40 H 1.08997 * 117.49657 * 359.97438 * 23 22 21 41 41 H 1.09000 * 117.49891 * 214.97937 * 23 22 21 42 42 H 1.08995 * 117.49922 * 107.49133 * 24 23 22 43 43 H 1.08998 * 117.49992 * 252.48750 * 24 23 22 44 44 H 1.08995 * 109.52551 * 182.83494 * 25 21 19 45 45 H 1.09004 * 109.51939 * 303.02991 * 25 21 19 46 46 H 1.09006 * 109.47763 * 297.62596 * 26 25 21 47 47 H 1.08996 * 109.49319 * 177.59696 * 26 25 21 48 48 H 1.08997 * 109.47957 * 301.17737 * 28 27 26 49 49 H 1.08994 * 109.49280 * 181.13982 * 28 27 26 50 50 H 1.08999 * 109.52600 * 182.48942 * 29 28 27 51 51 H 1.08998 * 109.57529 * 62.33027 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3331 2.0328 0.4479 5 6 2.4180 1.7369 -1.4331 6 7 3.4966 2.7233 -1.2407 7 6 3.8525 3.7007 -2.1312 8 1 4.6608 4.3772 -1.8962 9 6 3.1739 3.8222 -3.3361 10 7 2.1883 2.9983 -3.6224 11 14 3.6598 5.1551 -4.5514 12 1 4.6978 4.6292 -5.4741 13 1 2.4675 5.5709 -5.3330 14 1 4.2004 6.3247 -3.8133 15 6 4.1275 2.4832 0.0655 16 6 3.3824 1.3033 0.7243 17 1 3.9105 0.3665 0.5470 18 7 3.2107 1.5357 2.1605 19 6 4.1626 1.1350 3.0265 20 8 5.2019 0.6676 2.6115 21 6 3.9356 1.2680 4.5103 22 6 2.8124 0.3236 4.9428 23 6 3.0127 -1.1728 4.6947 24 6 3.0923 -0.6159 6.1175 25 6 5.2222 0.9118 5.2614 26 6 6.3187 1.9104 4.8815 27 8 5.8808 3.2359 5.1872 28 6 4.7082 3.6412 4.4781 29 6 3.5470 2.7122 4.8418 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.5729 2.1943 -1.9475 34 1 2.7847 0.8788 -1.9964 35 1 1.7139 3.0834 -4.4642 36 1 4.0383 3.3727 0.6892 37 1 5.1788 2.2290 -0.0693 38 1 2.4120 1.9779 2.4883 39 1 1.8013 0.7191 4.8446 40 1 3.9445 -1.4844 4.2228 41 1 2.1335 -1.7617 4.4332 42 1 2.2656 -0.8385 6.7921 43 1 4.0767 -0.5616 6.5823 44 1 5.0422 0.9597 6.3353 45 1 5.5364 -0.0955 4.9882 46 1 6.5266 1.8333 3.8142 47 1 7.2246 1.6877 5.4452 48 1 4.8950 3.5868 3.4057 49 1 4.4537 4.6652 4.7514 50 1 2.6632 2.9922 4.2687 51 1 3.3321 2.7961 5.9071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081985027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:32 Heat of formation + Delta-G solvation = -89.558228 kcal Electronic energy + Delta-G solvation = -32016.931258 eV Core-core repulsion = 27917.396942 eV Total energy + Delta-G solvation = -4099.534316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.21935 -40.28120 -38.95408 -38.15226 -37.51874 -35.71877 -34.12410 -33.43411 -31.99421 -30.58061 -28.99953 -27.54635 -27.12043 -25.99376 -24.74406 -23.85796 -22.83357 -22.34791 -22.21055 -21.64662 -20.25797 -19.07337 -18.03651 -17.78779 -17.58013 -17.17930 -16.96049 -16.70077 -16.14720 -16.03957 -15.80605 -15.73125 -15.58265 -15.28391 -15.04671 -14.93137 -14.51303 -14.23580 -13.97382 -13.74442 -13.35155 -13.26179 -13.18517 -13.05734 -12.75876 -12.70274 -12.54964 -12.49531 -12.34595 -12.06153 -12.04874 -11.92662 -11.86159 -11.62527 -11.58430 -11.42971 -11.09518 -10.82754 -10.69084 -10.50226 -10.32084 -10.10259 -8.99704 -7.82820 -5.30289 1.46013 1.48133 1.56768 1.58388 2.01066 2.43427 2.72804 2.84457 2.92017 3.28104 3.38775 3.53249 3.60847 3.70353 3.77220 3.92066 3.93859 3.98979 4.05213 4.09633 4.15287 4.25924 4.32795 4.33189 4.45558 4.55162 4.59338 4.64026 4.64790 4.65751 4.76298 4.80368 4.81289 4.86986 4.87516 4.89349 4.99900 5.03074 5.10125 5.19660 5.25481 5.27288 5.30208 5.42295 5.44248 5.66352 6.16987 6.20005 6.29761 6.50919 7.02624 7.21823 7.66959 8.29401 9.18467 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.003645 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.316140 B = 7680.575745 C = 9125.883936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.080 3.920 4 H 0.091 0.909 5 C 0.147 3.853 6 N -0.617 5.617 7 C -0.246 4.246 8 H 0.081 0.919 9 C -0.059 4.059 10 N -0.946 5.946 11 Si 0.983 3.017 12 H -0.290 1.290 13 H -0.288 1.288 14 H -0.268 1.268 15 C 0.134 3.866 16 C 0.156 3.844 17 H 0.074 0.926 18 N -0.699 5.699 19 C 0.525 3.475 20 O -0.576 6.576 21 C -0.040 4.040 22 C -0.146 4.146 23 C -0.191 4.191 24 C -0.154 4.154 25 C -0.126 4.126 26 C 0.048 3.952 27 O -0.394 6.394 28 C 0.049 3.951 29 C -0.135 4.135 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.088 0.912 34 H -0.014 1.014 35 H 0.250 0.750 36 H 0.039 0.961 37 H 0.010 0.990 38 H 0.411 0.589 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.038 0.962 47 H 0.106 0.894 48 H 0.025 0.975 49 H 0.118 0.882 50 H 0.095 0.905 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 -4.166 22.946 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.020 3.980 4 H 0.108 0.892 5 C 0.021 3.979 6 N -0.345 5.345 7 C -0.374 4.374 8 H 0.099 0.901 9 C -0.252 4.252 10 N -0.595 5.595 11 Si 0.810 3.190 12 H -0.217 1.217 13 H -0.214 1.214 14 H -0.193 1.193 15 C 0.008 3.992 16 C 0.050 3.950 17 H 0.092 0.908 18 N -0.351 5.351 19 C 0.313 3.687 20 O -0.455 6.455 21 C -0.043 4.043 22 C -0.165 4.165 23 C -0.228 4.228 24 C -0.191 4.191 25 C -0.163 4.163 26 C -0.028 4.028 27 O -0.313 6.313 28 C -0.027 4.027 29 C -0.173 4.173 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.004 0.996 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.249 0.751 39 H 0.148 0.852 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.134 0.866 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.124 0.876 48 H 0.043 0.957 49 H 0.136 0.864 50 H 0.114 0.886 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.636 -4.492 22.597 23.324 hybrid contribution -0.029 0.523 -1.694 1.773 sum -3.665 -3.969 20.903 21.590 Atomic orbital electron populations 1.22990 0.79253 1.03904 1.00742 1.87846 1.21769 1.26738 1.94926 1.23611 0.93121 0.84921 0.96364 0.89169 1.22085 0.93166 0.90194 0.92472 1.44537 1.37855 1.35386 1.16730 1.19437 1.14032 1.06942 0.97004 0.90144 1.25627 0.98544 1.01546 0.99439 1.69983 1.25158 1.40153 1.24193 0.85022 0.76823 0.78599 0.78510 1.21668 1.21385 1.19287 1.21632 0.94835 0.95657 0.87125 1.21589 0.95771 0.97393 0.80281 0.90797 1.45776 1.23304 1.60921 1.05063 1.21076 0.82399 0.75803 0.89394 1.90665 1.27691 1.46688 1.80502 1.20385 0.97184 0.97875 0.88829 1.22214 0.98447 0.90570 1.05225 1.22939 1.02919 0.96023 1.00965 1.23227 1.04487 1.00890 0.90476 1.22150 0.93253 0.99745 1.01176 1.22781 0.97735 0.81905 1.00388 1.87877 1.44921 1.31459 1.67002 1.22761 0.85102 1.00001 0.94884 1.22297 0.98857 0.90904 1.05244 0.87911 0.91926 0.94653 0.89416 0.99604 0.93990 0.94296 0.97228 0.75135 0.85179 0.91050 0.88021 0.86577 0.87642 0.87653 0.91011 0.94409 0.87569 0.95687 0.86449 0.88637 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.85 113.37 1.23 1.92 16 2 O -0.39 -13.83 10.52 -148.98 -1.57 -15.40 16 3 C 0.08 2.98 3.17 32.06 0.10 3.09 16 4 H 0.09 2.96 7.69 -2.39 -0.02 2.94 16 5 C 0.15 7.36 5.63 86.93 0.49 7.85 16 6 N -0.62 -32.59 3.40 -691.58 -2.35 -34.94 16 7 C -0.25 -13.94 10.27 84.03 0.86 -13.08 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 10 N -0.95 -55.57 10.09 21.65 0.22 -55.35 16 11 Si 0.98 45.39 29.55 68.60 2.03 47.41 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 C 0.13 5.99 7.00 86.73 0.61 6.60 16 16 C 0.16 5.88 2.96 46.18 0.14 6.02 16 17 H 0.07 3.20 7.70 -2.39 -0.02 3.18 16 18 N -0.70 -19.70 4.99 -436.93 -2.18 -21.88 16 19 C 0.53 15.08 4.68 87.66 0.41 15.49 16 20 O -0.58 -21.69 13.88 -3.02 -0.04 -21.73 16 21 C -0.04 -0.78 0.52 -52.81 -0.03 -0.80 16 22 C -0.15 -2.24 5.14 -10.80 -0.06 -2.29 16 23 C -0.19 -3.44 9.54 30.59 0.29 -3.14 16 24 C -0.15 -1.92 9.57 30.59 0.29 -1.62 16 25 C -0.13 -2.51 3.15 30.69 0.10 -2.41 16 26 C 0.05 1.18 6.56 72.01 0.47 1.65 16 27 O -0.39 -9.77 10.76 -148.98 -1.60 -11.37 16 28 C 0.05 1.05 6.62 72.01 0.48 1.52 16 29 C -0.14 -2.13 4.79 30.69 0.15 -1.98 16 30 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.06 1.25 8.12 -2.38 -0.02 1.23 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 4.83 5.87 -2.39 -0.01 4.82 16 34 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 35 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.04 1.65 8.03 -2.39 -0.02 1.63 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.41 8.87 7.40 -92.71 -0.69 8.18 16 39 H 0.13 1.52 8.12 -2.38 -0.02 1.50 16 40 H 0.07 1.67 7.68 -2.39 -0.02 1.65 16 41 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.11 1.25 5.83 -2.39 -0.01 1.24 16 44 H 0.11 1.58 6.79 -2.39 -0.02 1.57 16 45 H 0.07 1.60 7.13 -2.39 -0.02 1.58 16 46 H 0.04 1.18 6.08 -2.38 -0.01 1.17 16 47 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.02 0.67 7.38 -2.39 -0.02 0.65 16 49 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.10 1.18 7.04 -2.39 -0.02 1.16 16 51 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -73.04 390.73 0.74 -72.30 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.24 Total: 24.99 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.00 Total: 15.95 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -4.31 Total: -112.17 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -3.21 Total: -48.50 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -73.04 0.74 -72.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081985027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.259 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds