Wall clock time and date at job start Tue Mar 31 2020 21:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99845 * 2 1 4 4 C 1.53004 * 109.47031 * 150.00495 * 3 2 1 5 5 C 1.53000 * 109.47220 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46826 * 299.99764 * 5 4 3 7 7 C 1.50701 * 109.47050 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99812 * 337.20359 * 7 6 5 9 9 N 1.34773 * 119.99944 * 157.20461 * 7 6 5 10 10 C 1.48144 * 120.83863 * 173.81889 * 9 7 6 11 11 C 1.53545 * 107.12130 * 130.36323 * 10 9 7 12 12 O 1.42651 * 108.38530 * 56.12760 * 11 10 9 13 13 C 1.42781 * 115.68545 * 295.54109 * 12 11 10 14 14 H 1.08994 * 112.73282 * 290.33256 * 13 12 11 15 15 C 1.55398 * 107.09048 * 166.05215 * 13 12 11 16 16 N 1.47485 * 104.78621 * 281.68826 * 15 13 12 17 17 C 1.36932 * 125.69050 * 155.63400 * 16 15 13 18 18 H 1.07993 * 120.00257 * 179.97438 * 17 16 15 19 19 C 1.38819 * 119.99957 * 359.97438 * 17 16 15 20 20 N 1.31614 * 119.99873 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99761 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47610 * 59.99899 * 21 19 17 23 23 H 1.48507 * 109.47133 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47245 * 299.99493 * 21 19 17 25 25 C 1.47210 * 108.61984 * 335.60234 * 16 15 13 26 26 C 1.45661 * 120.12094 * 354.99480 * 9 7 6 27 27 H 1.08997 * 109.95900 * 345.46450 * 26 9 7 28 28 C 1.53001 * 109.47338 * 59.99939 * 6 5 4 29 29 C 1.52998 * 109.47370 * 270.00115 * 3 2 1 30 30 H 1.09004 * 109.46500 * 300.00033 * 1 2 3 31 31 H 1.08995 * 109.47191 * 59.99488 * 1 2 3 32 32 H 1.08991 * 109.47054 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47213 * 30.00199 * 3 2 1 34 34 H 1.09002 * 109.46846 * 59.99889 * 4 3 2 35 35 H 1.09001 * 109.46776 * 299.99836 * 4 3 2 36 36 H 1.09003 * 109.46980 * 180.02562 * 5 4 3 37 37 H 1.08989 * 109.47168 * 59.99546 * 5 4 3 38 38 H 1.09002 * 109.46930 * 299.99997 * 6 5 4 39 39 H 1.08996 * 109.55415 * 11.21660 * 10 9 7 40 40 H 1.09001 * 110.49528 * 250.03100 * 10 9 7 41 41 H 1.08998 * 109.68372 * 296.40015 * 11 10 9 42 42 H 1.09007 * 109.67513 * 175.84558 * 11 10 9 43 43 H 1.09008 * 110.37872 * 40.51383 * 15 13 12 44 44 H 1.08992 * 110.37550 * 162.85999 * 15 13 12 45 45 H 0.97000 * 119.99644 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.95814 * 241.89507 * 25 16 15 47 47 H 1.09000 * 109.96498 * 120.65408 * 25 16 15 48 48 H 1.09002 * 109.46545 * 60.00046 * 28 6 5 49 49 H 1.08995 * 109.47398 * 179.97438 * 28 6 5 50 50 H 1.09002 * 109.47356 * 300.00631 * 29 3 2 51 51 H 1.08999 * 109.47133 * 60.00262 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3590 1.2633 0.7212 5 6 3.9810 2.6611 0.7217 6 6 4.1883 3.1276 -0.7206 7 6 4.8015 4.5042 -0.7201 8 8 4.6767 5.2233 0.2485 9 7 5.4886 4.9362 -1.7960 10 6 5.9825 6.3309 -1.8720 11 6 7.4656 6.2646 -2.2638 12 8 7.5764 5.5337 -3.4838 13 6 7.1888 4.1610 -3.4203 14 1 7.8827 3.5539 -2.8390 15 6 7.0415 3.6598 -4.8838 16 7 5.7357 4.1799 -5.3302 17 6 5.3697 4.4116 -6.6292 18 1 4.3852 4.7950 -6.8528 19 6 6.2643 4.1535 -7.6589 20 7 7.4640 3.6857 -7.3866 21 14 5.7653 4.4702 -9.4309 22 1 5.4272 5.9060 -9.6010 23 1 6.8906 4.1159 -10.3329 24 1 4.5813 3.6395 -9.7678 25 6 4.8909 4.4079 -4.1463 26 6 5.7336 4.0377 -2.9160 27 1 5.5280 3.0091 -2.6197 28 6 2.8396 3.1698 -1.4418 29 6 2.2177 1.7715 -1.4425 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.3450 1.9994 0.5139 34 1 4.0242 0.5693 0.2072 35 1 3.2112 0.9313 1.7488 36 1 4.9421 2.6309 1.2351 37 1 3.3157 3.3546 1.2358 38 1 4.8537 2.4340 -1.2347 39 1 5.8774 6.8086 -0.8979 40 1 5.4257 6.8926 -2.6221 41 1 8.0300 5.7589 -1.4804 42 1 7.8537 7.2735 -2.4038 43 1 7.8424 4.0613 -5.5050 44 1 7.0465 2.5703 -4.9142 45 1 8.0892 3.5058 -8.1060 46 1 4.0046 3.7752 -4.1943 47 1 4.5977 5.4564 -4.0947 48 1 2.1743 3.8634 -0.9277 49 1 2.9872 3.5026 -2.4692 50 1 2.8828 1.0775 -1.9564 51 1 1.2568 1.8016 -1.9563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083178962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:57 Heat of formation + Delta-G solvation = -112.659528 kcal Electronic energy + Delta-G solvation = -31849.732601 eV Core-core repulsion = 27749.196537 eV Total energy + Delta-G solvation = -4100.536064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.01891 -40.39243 -39.43204 -37.46576 -37.01234 -35.96807 -34.03199 -32.08248 -31.77957 -31.03087 -29.26274 -28.93573 -27.40426 -26.30612 -24.97773 -23.75080 -23.49778 -22.30893 -21.95772 -21.05668 -19.58139 -18.99308 -18.57603 -17.84540 -17.57497 -16.90949 -16.89112 -16.73606 -16.20027 -16.07893 -15.96006 -15.60457 -15.50620 -14.98226 -14.73876 -14.62024 -14.49545 -14.14767 -14.01631 -13.57985 -13.51001 -13.33273 -13.09935 -13.04987 -12.97463 -12.69850 -12.66853 -12.54223 -12.25764 -12.12476 -12.08519 -12.07670 -11.94418 -11.78917 -11.54163 -11.40074 -11.26619 -10.99682 -10.74628 -10.68701 -10.38977 -9.60485 -8.86984 -7.74805 -5.18319 1.45125 1.49702 1.51897 1.58023 1.74986 2.52029 2.78829 2.83762 3.31622 3.37078 3.53107 3.59873 3.65913 3.68398 3.84423 3.92249 4.02910 4.09296 4.10855 4.14491 4.20145 4.29101 4.37295 4.41641 4.46258 4.48292 4.53759 4.57185 4.60479 4.70384 4.71751 4.75336 4.84508 4.88012 4.90026 4.96852 4.97945 5.08007 5.15057 5.15750 5.26498 5.30272 5.37068 5.40510 5.49293 5.78719 6.24429 6.29929 6.31249 6.48382 7.00836 7.11772 7.78268 8.40289 9.26974 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.003664 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.043656 B = 7640.969320 C = 9412.199420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.088 3.912 4 C -0.109 4.109 5 C -0.089 4.089 6 C -0.107 4.107 7 C 0.525 3.475 8 O -0.570 6.570 9 N -0.598 5.598 10 C 0.079 3.921 11 C 0.049 3.951 12 O -0.386 6.386 13 C 0.064 3.936 14 H 0.098 0.902 15 C 0.161 3.839 16 N -0.614 5.614 17 C -0.238 4.238 18 H 0.078 0.922 19 C -0.059 4.059 20 N -0.944 5.944 21 Si 0.977 3.023 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.277 1.277 25 C 0.136 3.864 26 C 0.109 3.891 27 H 0.122 0.878 28 C -0.101 4.101 29 C -0.132 4.132 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.083 0.917 44 H 0.020 0.980 45 H 0.248 0.752 46 H 0.038 0.962 47 H 0.016 0.984 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 -3.760 17.409 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.031 3.969 4 C -0.147 4.147 5 C -0.127 4.127 6 C -0.128 4.128 7 C 0.315 3.685 8 O -0.450 6.450 9 N -0.330 5.330 10 C -0.043 4.043 11 C -0.028 4.028 12 O -0.305 6.305 13 C 0.004 3.996 14 H 0.115 0.885 15 C 0.036 3.964 16 N -0.340 5.340 17 C -0.366 4.366 18 H 0.096 0.904 19 C -0.252 4.252 20 N -0.594 5.594 21 Si 0.805 3.195 22 H -0.208 1.208 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.009 3.991 26 C 0.003 3.997 27 H 0.140 0.860 28 C -0.139 4.139 29 C -0.170 4.170 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.101 0.899 44 H 0.038 0.962 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.034 0.966 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.300 -3.466 17.556 19.726 hybrid contribution -0.386 0.460 -1.178 1.322 sum -8.685 -3.006 16.378 18.780 Atomic orbital electron populations 1.22949 0.80003 1.03644 1.00609 1.87880 1.21001 1.28364 1.95161 1.22211 0.95298 0.84253 0.95176 1.21546 0.95100 0.96555 1.01490 1.21271 1.01956 0.96075 0.93360 1.21491 0.98494 0.92678 1.00115 1.21074 0.76653 0.89710 0.81071 1.90636 1.60943 1.58996 1.34377 1.48046 1.55131 1.12537 1.17317 1.22562 0.95938 0.82525 1.03303 1.23054 0.94304 0.98311 0.87091 1.87952 1.86725 1.22450 1.33327 1.23970 0.93245 0.83496 0.98855 0.88493 1.21884 0.90219 0.94620 0.89686 1.44533 1.12104 1.76216 1.01159 1.19309 0.98621 1.36498 0.82219 0.90425 1.25525 0.96343 1.01676 1.01672 1.69969 1.06865 1.51546 1.30986 0.85185 0.76778 0.77844 0.79680 1.20803 1.21929 1.20341 1.21494 0.93582 0.97638 0.86349 1.22273 0.96291 0.94969 0.86129 0.86005 1.21417 0.94122 0.97974 1.00432 1.21958 1.01732 0.95697 0.97632 0.93116 0.93694 0.88646 0.91403 0.90851 0.90029 0.90779 0.91260 0.87761 0.87616 0.91429 0.91937 0.86245 0.89863 0.96209 0.94240 0.94437 0.96563 0.91251 0.91545 0.91108 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.40 -7.99 10.35 -148.98 -1.54 -9.53 16 3 C 0.09 1.58 2.61 30.59 0.08 1.66 16 4 C -0.11 -1.86 5.57 30.60 0.17 -1.69 16 5 C -0.09 -1.70 4.71 30.60 0.14 -1.56 16 6 C -0.11 -2.34 1.78 -11.54 -0.02 -2.36 16 7 C 0.52 14.59 6.82 87.66 0.60 15.19 16 8 O -0.57 -18.55 15.54 -3.03 -0.05 -18.60 16 9 N -0.60 -17.42 2.77 -790.48 -2.19 -19.61 16 10 C 0.08 2.23 6.45 86.25 0.56 2.79 16 11 C 0.05 1.38 7.01 72.17 0.51 1.89 16 12 O -0.39 -14.73 10.09 -148.98 -1.50 -16.23 16 13 C 0.06 2.31 4.12 31.93 0.13 2.44 16 14 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 15 C 0.16 7.59 5.47 87.02 0.48 8.06 16 16 N -0.61 -30.49 3.40 -691.70 -2.35 -32.85 16 17 C -0.24 -13.05 10.28 84.04 0.86 -12.19 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 19 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 20 N -0.94 -54.87 10.09 21.65 0.22 -54.65 16 21 Si 0.98 45.04 29.55 68.60 2.03 47.07 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 C 0.14 5.36 6.51 86.46 0.56 5.92 16 26 C 0.11 3.46 2.64 45.88 0.12 3.58 16 27 H 0.12 3.36 5.47 -2.39 -0.01 3.34 16 28 C -0.10 -2.15 5.17 30.61 0.16 -1.99 16 29 C -0.13 -2.53 5.54 30.61 0.17 -2.36 16 30 H 0.05 0.59 8.09 -2.38 -0.02 0.57 16 31 H 0.04 0.59 7.87 -2.39 -0.02 0.57 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.11 7.79 -2.39 -0.02 1.09 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.43 7.88 -2.39 -0.02 1.42 16 38 H 0.10 2.15 6.04 -2.39 -0.01 2.13 16 39 H 0.11 2.80 7.08 -2.39 -0.02 2.78 16 40 H 0.07 2.07 7.57 -2.39 -0.02 2.05 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 42 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 43 H 0.08 4.63 5.86 -2.38 -0.01 4.62 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 46 H 0.04 1.42 6.90 -2.38 -0.02 1.40 16 47 H 0.02 0.69 7.26 -2.39 -0.02 0.67 16 48 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.07 1.60 6.20 -2.39 -0.01 1.58 16 50 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.07 1.32 7.87 -2.39 -0.02 1.30 16 Total: -1.00 -67.47 383.54 1.73 -65.74 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.91 Total: 20.53 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 6.21 Total: 18.12 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -4.33 Total: -107.10 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -3.09 Total: -44.36 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.47 1.73 -65.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083178962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.919 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds