Wall clock time and date at job start Tue Mar 31 2020 22:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 119.99843 * 2 1 4 4 H 1.48499 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47243 * 300.00117 * 3 2 1 6 6 H 1.48506 * 109.47319 * 60.00002 * 3 2 1 7 7 C 1.38811 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99860 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00038 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.46879 * 35.00170 * 10 9 7 12 12 C 1.52997 * 109.46864 * 274.99586 * 10 9 7 13 13 C 1.53007 * 109.46883 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47002 * 60.00285 * 13 12 10 15 15 C 1.53002 * 109.47142 * 300.00122 * 14 13 12 16 16 C 1.52995 * 109.47226 * 59.99717 * 15 14 13 17 17 H 1.09007 * 109.46924 * 60.00616 * 16 15 14 18 18 N 1.46501 * 109.47059 * 179.97438 * 16 15 14 19 19 C 1.34776 * 120.00184 * 275.00079 * 18 16 15 20 20 O 1.21281 * 119.99886 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99893 * 179.97438 * 19 18 16 22 22 H 1.08997 * 109.49797 * 300.00141 * 21 19 18 23 23 C 1.53039 * 109.49740 * 179.97438 * 21 19 18 24 24 C 1.53042 * 109.54149 * 178.68416 * 23 21 19 25 25 C 1.53190 * 109.31066 * 61.35937 * 24 23 21 26 26 N 1.46919 * 108.77953 * 305.36944 * 25 24 23 27 27 C 1.34777 * 120.63417 * 233.60897 * 26 25 24 28 28 N 1.34775 * 119.99619 * 354.77143 * 27 26 25 29 29 O 1.21577 * 120.00432 * 174.77167 * 27 26 25 30 30 C 1.46930 * 118.76624 * 53.58566 * 26 25 24 31 31 H 0.97003 * 120.00620 * 359.97438 * 1 2 3 32 32 H 0.97005 * 120.00047 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.47589 * 299.99505 * 12 10 9 34 34 H 1.09000 * 109.47121 * 60.00719 * 12 10 9 35 35 H 1.08998 * 109.46981 * 300.00657 * 13 12 10 36 36 H 1.08996 * 109.47055 * 180.02562 * 13 12 10 37 37 H 1.08995 * 109.47095 * 180.02562 * 14 13 12 38 38 H 1.08997 * 109.47477 * 59.99799 * 14 13 12 39 39 H 1.09008 * 109.46926 * 299.99690 * 15 14 13 40 40 H 1.09006 * 109.47069 * 180.02562 * 15 14 13 41 41 H 0.97006 * 119.99613 * 95.00142 * 18 16 15 42 42 H 1.09002 * 109.46202 * 298.70388 * 23 21 19 43 43 H 1.09004 * 109.46146 * 58.66583 * 23 21 19 44 44 H 1.08990 * 109.50280 * 181.31727 * 24 23 21 45 45 H 1.09004 * 109.49361 * 301.41475 * 24 23 21 46 46 H 1.09000 * 109.58538 * 65.16127 * 25 24 23 47 47 H 1.09000 * 109.58618 * 185.58135 * 25 24 23 48 48 H 0.96999 * 120.00105 * 4.97010 * 28 27 26 49 49 H 0.97003 * 120.00170 * 184.97266 * 28 27 26 50 50 H 1.08997 * 109.61912 * 186.64207 * 30 26 25 51 51 H 1.09010 * 109.56265 * 66.21405 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 2.4218 -4.0356 -1.4365 13 6 3.1874 -5.3603 -1.4364 14 6 2.3108 -6.4559 -0.8266 15 6 1.9469 -6.0771 0.6105 16 6 1.1814 -4.7524 0.6104 17 1 0.2706 -4.8591 0.0211 18 7 0.8325 -4.3900 1.9863 19 6 -0.2855 -4.8873 2.5513 20 8 -1.0024 -5.6353 1.9209 21 6 -0.6440 -4.5149 3.9669 22 1 0.1535 -4.8309 4.6394 23 6 -1.9495 -5.2087 4.3625 24 6 -2.2974 -4.8573 5.8109 25 6 -2.4988 -3.3435 5.9306 26 7 -1.3016 -2.6649 5.4159 27 6 -0.6512 -1.7550 6.1679 28 7 -1.1558 -1.3822 7.3607 29 8 0.3905 -1.2705 5.7703 30 6 -0.8259 -2.9971 4.0660 31 1 -0.4851 0.8400 0.0004 32 1 0.3555 -2.3880 0.0005 33 1 1.5112 -4.1419 -2.0259 34 1 3.0468 -3.2553 -1.8708 35 1 4.0981 -5.2536 -0.8471 36 1 3.4470 -5.6300 -2.4601 37 1 2.8563 -7.3995 -0.8261 38 1 1.4000 -6.5627 -1.4158 39 1 2.8577 -5.9704 1.1998 40 1 1.3227 -6.8579 1.0451 41 1 1.4062 -3.7920 2.4907 42 1 -2.7521 -4.8745 3.7050 43 1 -1.8298 -6.2881 4.2695 44 1 -3.2147 -5.3703 6.0995 45 1 -1.4841 -5.1691 6.4663 46 1 -3.3686 -3.0432 5.3463 47 1 -2.6489 -3.0764 6.9766 48 1 -1.9473 -1.8202 7.7108 49 1 -0.7275 -0.6757 7.8691 50 1 0.1275 -2.5020 3.8818 51 1 -1.5591 -2.6682 3.3294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085265391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:12 Heat of formation + Delta-G solvation = -97.709887 kcal Electronic energy + Delta-G solvation = -31415.319685 eV Core-core repulsion = 27347.724637 eV Total energy + Delta-G solvation = -4067.595048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.72876 -40.87787 -39.41871 -38.01301 -35.81748 -35.18843 -35.01908 -33.32753 -33.00082 -32.34790 -30.44480 -29.23624 -26.42238 -25.71570 -25.31875 -23.47704 -22.62070 -22.28312 -21.34089 -20.81274 -20.40187 -19.47163 -19.13884 -18.14623 -17.77595 -17.35056 -16.74545 -16.59453 -16.12907 -15.89234 -15.63533 -15.50769 -15.34628 -15.07773 -14.91191 -14.64788 -14.60462 -14.38025 -14.16976 -14.04858 -13.65570 -13.53368 -13.45643 -12.92966 -12.87119 -12.54274 -12.22389 -12.16440 -12.04401 -12.01865 -11.98924 -11.96502 -11.67451 -11.64159 -11.43570 -11.34027 -11.11435 -10.99140 -10.72709 -10.67201 -9.93641 -9.65415 -8.98307 -7.92123 -5.19460 1.44112 1.46519 1.49898 1.54373 1.82533 2.12053 2.28481 2.55651 3.21037 3.42092 3.61764 3.68450 3.71771 3.80772 3.84575 4.02876 4.09422 4.14159 4.23305 4.27718 4.33113 4.44222 4.49788 4.51628 4.55599 4.59868 4.70464 4.74510 4.78415 4.90323 4.95818 5.01582 5.03366 5.15473 5.17815 5.24636 5.29402 5.31336 5.38685 5.41886 5.47532 5.53100 5.57717 5.69165 5.82163 5.99870 6.28214 6.58633 6.91600 7.25562 7.35592 7.60552 8.09558 8.33175 9.30876 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008069 B = 0.004765 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3469.100726 B = 5874.261401 C = 8648.043390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.302 1.302 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.730 5.730 10 C 0.171 3.829 11 H 0.053 0.947 12 C -0.127 4.127 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.114 4.114 16 C 0.147 3.853 17 H 0.055 0.945 18 N -0.706 5.706 19 C 0.519 3.481 20 O -0.576 6.576 21 C -0.107 4.107 22 H 0.112 0.888 23 C -0.096 4.096 24 C -0.123 4.123 25 C 0.101 3.899 26 N -0.623 5.623 27 C 0.698 3.302 28 N -0.844 5.844 29 O -0.644 6.644 30 C 0.148 3.852 31 H 0.246 0.754 32 H 0.369 0.631 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.404 0.596 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.114 0.886 48 H 0.413 0.587 49 H 0.420 0.580 50 H 0.070 0.930 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -14.220 14.899 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.230 1.230 7 C -0.360 4.360 8 H 0.094 0.906 9 N -0.368 5.368 10 C 0.062 3.938 11 H 0.071 0.929 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.153 4.153 16 C 0.042 3.958 17 H 0.074 0.926 18 N -0.354 5.354 19 C 0.305 3.695 20 O -0.456 6.456 21 C -0.129 4.129 22 H 0.130 0.870 23 C -0.134 4.134 24 C -0.161 4.161 25 C -0.020 4.020 26 N -0.360 5.360 27 C 0.398 3.602 28 N -0.416 5.416 29 O -0.525 6.525 30 C 0.023 3.977 31 H 0.055 0.945 32 H 0.200 0.800 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.239 0.761 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.128 0.872 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.132 0.868 48 H 0.247 0.753 49 H 0.253 0.747 50 H 0.089 0.911 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.903 -14.395 14.083 20.346 hybrid contribution -0.047 1.919 0.050 1.920 sum -2.950 -12.476 14.134 19.082 Atomic orbital electron populations 1.69820 1.06443 1.25424 1.59894 1.25406 0.96171 1.00591 1.04197 0.85238 0.78564 0.80805 0.76199 1.18885 1.22240 1.22986 1.19557 0.91258 0.84960 1.40208 0.90603 1.42537 1.05128 1.00656 1.88523 1.20674 0.93798 0.84417 0.94878 0.92930 1.22079 0.99533 0.97453 0.97720 1.21518 0.98345 0.93381 1.01565 1.21470 0.99857 0.98972 0.94439 1.21801 0.99954 0.95032 0.98500 1.21172 0.97680 0.94869 0.82096 0.92644 1.46044 1.25514 1.48773 1.15113 1.20802 0.79997 0.79597 0.89106 1.90637 1.51598 1.38294 1.65094 1.21653 1.02062 0.96139 0.93050 0.87033 1.21326 0.94167 1.00478 0.97420 1.21926 1.04179 0.94811 0.95199 1.22052 0.86125 0.92870 1.00987 1.47190 1.30471 1.42717 1.15621 1.16166 0.82664 0.79678 0.81712 1.42869 1.35022 1.43855 1.19845 1.90984 1.26175 1.61176 1.74177 1.21062 1.00485 0.93264 0.82885 0.94489 0.79971 0.93910 0.93325 0.91188 0.90783 0.89406 0.92664 0.90624 0.92141 0.76116 0.92329 0.90685 0.87177 0.90550 0.90586 0.86850 0.75325 0.74708 0.91110 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.49 13.06 21.65 0.28 -60.21 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.96 47.98 29.55 68.60 2.03 50.01 16 4 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 6 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 7 C -0.23 -12.63 9.93 84.03 0.83 -11.79 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -36.56 4.95 -322.95 -1.60 -38.16 16 10 C 0.17 6.64 2.29 44.99 0.10 6.75 16 11 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 12 C -0.13 -4.46 5.50 30.60 0.17 -4.29 16 13 C -0.11 -2.81 5.92 30.60 0.18 -2.63 16 14 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 15 C -0.11 -3.11 5.49 30.59 0.17 -2.95 16 16 C 0.15 5.13 1.98 44.99 0.09 5.22 16 17 H 0.06 2.26 7.58 -2.38 -0.02 2.24 16 18 N -0.71 -24.09 4.82 -442.53 -2.13 -26.22 16 19 C 0.52 17.36 7.12 87.66 0.62 17.98 16 20 O -0.58 -22.36 15.64 -3.03 -0.05 -22.41 16 21 C -0.11 -2.83 2.67 -11.46 -0.03 -2.86 16 22 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 23 C -0.10 -2.03 4.46 30.62 0.14 -1.89 16 24 C -0.12 -1.58 6.08 30.67 0.19 -1.40 16 25 C 0.10 1.44 6.39 86.36 0.55 2.00 16 26 N -0.62 -15.48 2.97 -836.93 -2.49 -17.97 16 27 C 0.70 19.97 8.57 179.05 1.53 21.50 16 28 N -0.84 -13.91 8.78 -184.76 -1.62 -15.53 16 29 O -0.64 -26.40 16.59 -3.96 -0.07 -26.46 16 30 C 0.15 4.67 5.58 86.36 0.48 5.16 16 31 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.37 20.63 7.80 -92.70 -0.72 19.90 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 41 H 0.40 13.88 8.15 -92.70 -0.76 13.12 16 42 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 43 H 0.07 1.59 8.07 -2.38 -0.02 1.57 16 44 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.11 0.76 5.65 -2.39 -0.01 0.75 16 48 H 0.41 3.42 6.32 -92.71 -0.59 2.84 16 49 H 0.42 6.16 8.93 -92.71 -0.83 5.33 16 50 H 0.07 2.75 6.60 -2.39 -0.02 2.73 16 51 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -79.94 398.39 -1.89 -81.83 By element: Atomic # 1 Polarization: 52.40 SS G_CDS: -1.92 Total: 50.47 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 5.68 Total: 24.64 kcal Atomic # 7 Polarization: -150.52 SS G_CDS: -7.56 Total: -158.08 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -0.11 Total: -48.87 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -79.94 -1.89 -81.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085265391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.882 kcal (2) G-P(sol) polarization free energy of solvation -79.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds