Wall clock time and date at job start Tue Mar 31 2020 22:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86802 * 120.00243 * 2 1 4 4 H 1.48504 * 109.46880 * 270.00197 * 3 2 1 5 5 H 1.48501 * 109.46994 * 30.00071 * 3 2 1 6 6 H 1.48495 * 109.47371 * 150.00463 * 3 2 1 7 7 C 1.38821 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99906 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47011 * 35.00479 * 10 9 7 12 12 C 1.52998 * 109.47122 * 275.00091 * 10 9 7 13 13 C 1.53004 * 109.46839 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47302 * 60.00120 * 13 12 10 15 15 C 1.52998 * 109.47076 * 299.99736 * 14 13 12 16 16 C 1.52998 * 109.47277 * 154.99843 * 10 9 7 17 17 H 1.09000 * 109.47034 * 60.00089 * 16 10 9 18 18 N 1.46504 * 109.47520 * 300.00218 * 16 10 9 19 19 C 1.34773 * 120.00369 * 154.99613 * 18 16 10 20 20 O 1.21280 * 120.00063 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00015 * 180.02562 * 19 18 16 22 22 H 1.09003 * 109.49646 * 59.93835 * 21 19 18 23 23 C 1.53043 * 109.49358 * 179.97438 * 21 19 18 24 24 C 1.53049 * 109.53395 * 181.31763 * 23 21 19 25 25 C 1.53195 * 109.30900 * 298.63705 * 24 23 21 26 26 N 1.46922 * 108.78022 * 54.63743 * 25 24 23 27 27 C 1.34773 * 120.63251 * 126.41011 * 26 25 24 28 28 N 1.34772 * 120.00092 * 354.96782 * 27 26 25 29 29 O 1.21589 * 119.99602 * 174.96396 * 27 26 25 30 30 C 1.46925 * 118.73681 * 306.39093 * 26 25 24 31 31 H 0.97001 * 120.00412 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99924 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.46969 * 60.00275 * 12 10 9 34 34 H 1.09000 * 109.47036 * 299.99817 * 12 10 9 35 35 H 1.09000 * 109.47091 * 299.99703 * 13 12 10 36 36 H 1.08998 * 109.46859 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.46753 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47387 * 59.99765 * 14 13 12 39 39 H 1.09000 * 109.47036 * 300.00244 * 15 14 13 40 40 H 1.08995 * 109.47211 * 180.02562 * 15 14 13 41 41 H 0.97000 * 119.99488 * 335.00484 * 18 16 10 42 42 H 1.08993 * 109.46421 * 301.33186 * 23 21 19 43 43 H 1.09000 * 109.45696 * 61.31454 * 23 21 19 44 44 H 1.08992 * 109.49706 * 58.58347 * 24 23 21 45 45 H 1.08995 * 109.49726 * 178.65448 * 24 23 21 46 46 H 1.08998 * 109.58620 * 174.42474 * 25 24 23 47 47 H 1.09002 * 109.58814 * 294.70284 * 25 24 23 48 48 H 0.96998 * 119.99846 * 5.05859 * 28 27 26 49 49 H 0.97001 * 119.99703 * 185.06663 * 28 27 26 50 50 H 1.09000 * 109.58688 * 293.82098 * 30 26 25 51 51 H 1.08998 * 109.58801 * 173.39400 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9686 -3.5506 0.5890 12 6 2.4218 -4.0356 -1.4375 13 6 3.1863 -5.3610 -1.4375 14 6 2.3085 -6.4560 -0.8281 15 6 1.9446 -6.0772 0.6089 16 6 1.1808 -4.7521 0.6091 17 1 0.2701 -4.8584 0.0197 18 7 0.8323 -4.3895 1.9851 19 6 -0.2857 -4.8863 2.5505 20 8 -1.0036 -5.6333 1.9200 21 6 -0.6444 -4.5127 3.9657 22 1 -0.7710 -3.4323 4.0358 23 6 -1.9500 -5.2062 4.3617 24 6 -2.3324 -4.8016 5.7873 25 6 -1.2328 -5.2523 6.7540 26 7 0.0523 -4.7069 6.2962 27 6 0.8295 -3.9882 7.1304 28 7 0.3861 -3.6775 8.3646 29 8 1.9307 -3.6201 6.7694 30 6 0.4742 -4.9602 4.9118 31 1 -0.4851 0.8400 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 3.0468 -3.2553 -1.8718 34 1 1.5111 -4.1419 -2.0270 35 1 4.0969 -5.2552 -0.8480 36 1 3.4451 -5.6311 -2.4613 37 1 2.8530 -7.4003 -0.8286 38 1 1.3978 -6.5619 -1.4177 39 1 2.8553 -5.9714 1.1984 40 1 1.3197 -6.8575 1.0432 41 1 1.4062 -3.7916 2.4892 42 1 -2.7422 -4.9084 3.6749 43 1 -1.8158 -6.2869 4.3148 44 1 -2.4423 -3.7185 5.8409 45 1 -3.2746 -5.2769 6.0600 46 1 -1.4516 -4.8808 7.7551 47 1 -1.1849 -6.3412 6.7708 48 1 -0.4600 -4.0322 8.6795 49 1 0.9132 -3.0992 8.9379 50 1 0.6631 -6.0251 4.7764 51 1 1.3817 -4.3959 4.6973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085265392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:17 Heat of formation + Delta-G solvation = -72.117164 kcal Electronic energy + Delta-G solvation = -31145.604211 eV Core-core repulsion = 27079.118947 eV Total energy + Delta-G solvation = -4066.485264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.70631 -39.65434 -38.11947 -36.95091 -34.16048 -34.01090 -33.72820 -32.48409 -31.46708 -31.09064 -29.13321 -27.62296 -25.55809 -24.38212 -23.67925 -22.38691 -21.40177 -21.00479 -20.09544 -19.69944 -19.24218 -18.64233 -17.30886 -17.08709 -16.57584 -15.97091 -15.54683 -15.19551 -15.06653 -14.82653 -14.55473 -14.09903 -14.07514 -13.75962 -13.60322 -13.48672 -13.31748 -13.20642 -12.93686 -12.87336 -12.53026 -12.10261 -12.03531 -11.59710 -11.22655 -11.09172 -11.05264 -10.88883 -10.81395 -10.75013 -10.71626 -10.52816 -10.33845 -10.29147 -10.14190 -9.87101 -9.73085 -9.61374 -9.43673 -8.89832 -8.79553 -8.53173 -6.96349 -5.76149 -3.05412 2.51223 2.97288 3.07962 3.43815 3.49682 3.50718 3.55274 3.87116 4.50749 4.58009 4.59892 4.69955 4.84787 4.99072 5.08637 5.09981 5.18665 5.23469 5.34586 5.44924 5.51529 5.55273 5.57022 5.62979 5.66369 5.75469 5.80021 5.85886 5.93110 5.99153 6.01209 6.08683 6.14617 6.17535 6.23785 6.35889 6.49108 6.51566 6.54832 6.55438 6.61448 6.72198 6.89394 6.94179 7.12210 7.64734 7.70412 7.95435 8.41221 8.44545 8.60545 9.53211 10.09488 10.44724 11.45934 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008577 B = 0.003923 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.641849 B = 7134.820981 C = 8903.965886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.141 3.859 17 H 0.083 0.917 18 N -0.705 5.705 19 C 0.524 3.476 20 O -0.548 6.548 21 C -0.125 4.125 22 H 0.104 0.896 23 C -0.097 4.097 24 C -0.136 4.136 25 C 0.110 3.890 26 N -0.626 5.626 27 C 0.709 3.291 28 N -0.869 5.869 29 O -0.587 6.587 30 C 0.141 3.859 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.404 0.596 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.395 0.605 49 H 0.413 0.587 50 H 0.070 0.930 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 -14.318 14.071 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.163 4.163 16 C 0.035 3.965 17 H 0.101 0.899 18 N -0.353 5.353 19 C 0.308 3.692 20 O -0.426 6.426 21 C -0.147 4.147 22 H 0.122 0.878 23 C -0.135 4.135 24 C -0.175 4.175 25 C -0.013 4.013 26 N -0.364 5.364 27 C 0.408 3.592 28 N -0.440 5.440 29 O -0.464 6.464 30 C 0.018 3.982 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.239 0.761 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.225 0.775 49 H 0.245 0.755 50 H 0.089 0.911 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.083 -14.509 13.251 19.760 hybrid contribution 0.080 1.478 0.564 1.584 sum -2.003 -13.031 13.815 19.097 Atomic orbital electron populations 1.69666 1.05086 1.25577 1.57527 1.24716 0.95431 0.97582 1.02936 0.86238 0.78728 0.84049 0.77466 1.21795 1.21882 1.20744 1.19213 0.90932 0.84013 1.42857 0.91193 1.42403 1.05776 0.99488 1.88516 1.20466 0.93984 0.85783 0.93576 0.93134 1.22217 0.99911 0.95511 0.99729 1.21583 0.98556 0.95695 0.99937 1.21466 0.99861 0.97989 0.95821 1.21857 1.00036 0.97231 0.97135 1.21287 0.98973 0.93979 0.82242 0.89855 1.45973 1.25101 1.48927 1.15348 1.20203 0.80743 0.80191 0.88017 1.90661 1.50733 1.36860 1.64381 1.21739 0.97239 1.03348 0.92365 0.87808 1.21295 0.96025 1.00680 0.95507 1.21970 0.97939 1.02252 0.95318 1.21688 0.83135 0.98912 0.97561 1.47192 1.20895 1.56210 1.12132 1.15850 0.83808 0.78561 0.80931 1.43155 1.27365 1.57006 1.16447 1.90997 1.19939 1.59311 1.76187 1.21384 0.97173 1.01324 0.78353 0.93577 0.78181 0.91634 0.92504 0.92365 0.92730 0.92439 0.92022 0.91998 0.91983 0.76093 0.90497 0.91040 0.91134 0.90238 0.90543 0.91018 0.77496 0.75468 0.91126 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.45 9.93 -15.05 -0.15 -6.60 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.44 4.95 -53.43 -0.26 -17.71 16 10 C 0.17 3.30 2.29 -67.94 -0.16 3.14 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 13 C -0.12 -1.67 5.92 -26.73 -0.16 -1.82 16 14 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.12 -1.77 5.49 -26.76 -0.15 -1.91 16 16 C 0.14 2.40 1.97 -67.96 -0.13 2.27 16 17 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 18 N -0.70 -11.57 4.82 -53.83 -0.26 -11.83 16 19 C 0.52 8.46 7.12 -10.99 -0.08 8.38 16 20 O -0.55 -10.34 15.64 5.56 0.09 -10.25 16 21 C -0.12 -1.62 2.68 -91.65 -0.25 -1.86 16 22 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 23 C -0.10 -1.07 4.46 -26.68 -0.12 -1.19 16 24 C -0.14 -1.07 6.08 -26.60 -0.16 -1.23 16 25 C 0.11 0.77 6.43 -3.71 -0.02 0.75 16 26 N -0.63 -6.62 2.97 -178.50 -0.53 -7.16 16 27 C 0.71 8.77 8.57 -86.93 -0.75 8.03 16 28 N -0.87 -6.69 8.79 27.63 0.24 -6.45 16 29 O -0.59 -10.08 16.61 5.29 0.09 -9.99 16 30 C 0.14 1.70 5.56 -3.71 -0.02 1.68 16 31 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.40 6.61 8.15 -40.82 -0.33 6.28 16 42 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 43 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.33 5.57 -51.93 -0.29 0.04 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.39 1.81 6.29 -40.82 -0.26 1.55 16 49 H 0.41 2.78 8.93 -40.82 -0.36 2.42 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.10 1.39 6.64 -51.93 -0.34 1.04 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -34.38 398.36 -10.07 -44.45 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -8.60 Total: 17.64 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -2.54 Total: 5.11 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -0.09 Total: -70.30 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.17 Total: -20.24 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.38 -10.07 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085265392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.667 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds