Wall clock time and date at job start Tue Mar 31 2020 22:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99802 * 2 1 4 4 H 1.48496 * 109.47326 * 270.00256 * 3 2 1 5 5 H 1.48504 * 109.47172 * 30.00731 * 3 2 1 6 6 H 1.48503 * 109.46969 * 150.00110 * 3 2 1 7 7 C 1.38812 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00148 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00105 * 359.71756 * 7 2 1 10 10 C 1.46493 * 120.00223 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47369 * 34.99851 * 10 9 7 12 12 C 1.53008 * 109.47046 * 275.00172 * 10 9 7 13 13 C 1.53002 * 109.46794 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47175 * 60.00499 * 13 12 10 15 15 C 1.52999 * 109.46894 * 299.99592 * 14 13 12 16 16 C 1.53000 * 109.47249 * 155.00472 * 10 9 7 17 17 H 1.08996 * 109.47236 * 60.00181 * 16 10 9 18 18 N 1.46503 * 109.46766 * 299.99590 * 16 10 9 19 19 C 1.34780 * 119.99257 * 155.00020 * 18 16 10 20 20 O 1.21277 * 120.00595 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99458 * 180.02562 * 19 18 16 22 22 H 1.09000 * 109.58721 * 349.44838 * 21 19 18 23 23 C 1.53189 * 109.58894 * 109.87990 * 21 19 18 24 24 C 1.53043 * 109.31349 * 174.41959 * 23 21 19 25 25 C 1.53035 * 109.53686 * 298.63839 * 24 23 21 26 26 C 1.53194 * 109.31919 * 61.36467 * 25 24 23 27 27 N 1.46929 * 109.58319 * 229.17194 * 21 19 18 28 28 C 1.34774 * 120.63371 * 6.61911 * 27 21 19 29 29 N 1.34774 * 120.00208 * 185.19719 * 28 27 21 30 30 O 1.21586 * 119.99732 * 5.20868 * 28 27 21 31 31 H 0.96995 * 120.00342 * 359.97438 * 1 2 3 32 32 H 0.97003 * 119.99690 * 0.02562 * 9 7 2 33 33 H 1.08989 * 109.47088 * 299.99819 * 12 10 9 34 34 H 1.09002 * 109.46896 * 60.00192 * 12 10 9 35 35 H 1.09008 * 109.46608 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.47518 * 300.00116 * 13 12 10 37 37 H 1.09003 * 109.47210 * 59.99429 * 14 13 12 38 38 H 1.09000 * 109.47127 * 179.97438 * 14 13 12 39 39 H 1.09004 * 109.47425 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.47059 * 299.99930 * 15 14 13 41 41 H 0.96995 * 120.00244 * 335.00806 * 18 16 10 42 42 H 1.08993 * 109.49565 * 294.37226 * 23 21 19 43 43 H 1.08998 * 109.49521 * 54.46743 * 23 21 19 44 44 H 1.09002 * 109.45967 * 178.61111 * 24 23 21 45 45 H 1.08998 * 109.44492 * 58.64673 * 24 23 21 46 46 H 1.08995 * 109.49844 * 301.40891 * 25 24 23 47 47 H 1.09004 * 109.52063 * 181.33395 * 25 24 23 48 48 H 1.08990 * 109.59055 * 185.57888 * 26 25 24 49 49 H 1.08994 * 109.58294 * 65.14825 * 26 25 24 50 50 H 0.96996 * 119.99741 * 4.93061 * 29 28 27 51 51 H 0.96999 * 119.99815 * 184.93314 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 0.0048 10 6 2.0581 -3.6567 0.0048 11 1 2.9710 -3.5492 0.5904 12 6 2.4164 -4.0387 -1.4329 13 6 3.1820 -5.3635 -1.4327 14 6 2.3076 -6.4578 -0.8172 15 6 1.9493 -6.0758 0.6204 16 6 1.1832 -4.7507 0.6201 17 1 0.2703 -4.8583 0.0344 18 7 0.8402 -4.3850 1.9967 19 6 -0.2757 -4.8806 2.5674 20 8 -0.9955 -5.6297 1.9416 21 6 -0.6290 -4.5040 3.9832 22 1 0.2119 -3.9856 4.4440 23 6 -1.8594 -3.5914 3.9801 24 6 -2.2962 -3.3258 5.4226 25 6 -2.6767 -4.6475 6.0937 26 6 -1.4555 -5.5721 6.1208 27 7 -0.9413 -5.7164 4.7520 28 6 -0.7592 -6.9379 4.2122 29 7 -1.1472 -8.0378 4.8875 30 8 -0.2448 -7.0474 3.1160 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0085 33 1 1.5035 -4.1463 -2.0185 34 1 3.0397 -3.2593 -1.8713 35 1 3.4376 -5.6354 -2.4569 36 1 4.0950 -5.2555 -0.8471 37 1 1.3946 -6.5657 -1.4028 38 1 2.8528 -7.4016 -0.8175 39 1 1.3267 -6.8555 1.0591 40 1 2.8623 -5.9678 1.2060 41 1 1.4160 -3.7861 2.4972 42 1 -1.6108 -2.6473 3.4955 43 1 -2.6708 -4.0767 3.4377 44 1 -3.1567 -2.6567 5.4241 45 1 -1.4756 -2.8632 5.9709 46 1 -3.4804 -5.1228 5.5315 47 1 -3.0103 -4.4554 7.1135 48 1 -1.7454 -6.5491 6.5071 49 1 -0.6838 -5.1394 6.7573 50 1 -1.6215 -7.9481 5.7288 51 1 -0.9520 -8.9190 4.5322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085389668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:07 Heat of formation + Delta-G solvation = -46.824753 kcal Electronic energy + Delta-G solvation = -31993.315428 eV Core-core repulsion = 27927.926925 eV Total energy + Delta-G solvation = -4065.388503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.83607 -38.94922 -37.54727 -37.09005 -33.92330 -33.81203 -33.33623 -32.41640 -31.27008 -31.01614 -29.02422 -27.57477 -25.62488 -23.93695 -23.60061 -22.04034 -21.47399 -20.89532 -20.02091 -19.60776 -19.29074 -18.19382 -17.07316 -16.95229 -16.22815 -15.89979 -15.27493 -14.90841 -14.71598 -14.55486 -14.46369 -14.15755 -13.93207 -13.70321 -13.55438 -13.40377 -13.24368 -12.89456 -12.82363 -12.53531 -12.38547 -11.85711 -11.82769 -11.59418 -11.25281 -10.99524 -10.97764 -10.86244 -10.77731 -10.64907 -10.58866 -10.44680 -10.19010 -10.10178 -9.67920 -9.64014 -9.48427 -9.42840 -8.97314 -8.80113 -8.62263 -8.02945 -6.91164 -5.73015 -3.01544 2.59600 3.27160 3.43874 3.49543 3.50664 3.65253 3.69337 4.18162 4.58189 4.60460 4.68775 4.75731 5.00279 5.11720 5.18534 5.27043 5.29051 5.34701 5.38876 5.50932 5.61585 5.62872 5.69892 5.72315 5.77941 5.90424 5.94973 6.02065 6.02902 6.08688 6.13944 6.18769 6.26843 6.29336 6.37963 6.59103 6.64130 6.70292 6.71742 6.74072 6.75678 6.95725 7.04206 7.12545 7.34924 7.72607 7.88826 8.26542 8.44778 8.73549 9.09717 9.56305 10.14772 10.50668 11.49150 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.004330 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.849682 B = 6464.392334 C = 8794.573776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.172 3.828 11 H 0.048 0.952 12 C -0.132 4.132 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.122 4.122 16 C 0.153 3.847 17 H 0.078 0.922 18 N -0.709 5.709 19 C 0.529 3.471 20 O -0.511 6.511 21 C 0.149 3.851 22 H 0.084 0.916 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.138 4.138 26 C 0.116 3.884 27 N -0.620 5.620 28 C 0.695 3.305 29 N -0.873 5.873 30 O -0.541 6.541 31 H 0.254 0.746 32 H 0.385 0.615 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.396 0.604 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.389 0.611 51 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 -13.784 14.650 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.734 3.266 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.061 3.939 11 H 0.066 0.934 12 C -0.173 4.173 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.161 4.161 16 C 0.047 3.953 17 H 0.096 0.904 18 N -0.359 5.359 19 C 0.313 3.687 20 O -0.386 6.386 21 C 0.041 3.959 22 H 0.102 0.898 23 C -0.164 4.164 24 C -0.154 4.154 25 C -0.176 4.176 26 C -0.007 4.007 27 N -0.361 5.361 28 C 0.395 3.605 29 N -0.444 5.444 30 O -0.415 6.415 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.230 0.770 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.088 0.912 50 H 0.219 0.781 51 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.190 -14.072 13.440 19.582 hybrid contribution 0.215 0.995 0.592 1.177 sum -1.975 -13.078 14.032 19.283 Atomic orbital electron populations 1.69672 1.05018 1.25446 1.57747 1.24701 0.95417 0.97454 1.03218 0.86256 0.78624 0.84195 0.77486 1.21872 1.21923 1.20870 1.19222 0.90895 0.84105 1.42501 0.91302 1.42414 1.05809 0.99485 1.88454 1.20490 0.94021 0.85929 0.93419 0.93400 1.22200 0.99825 0.95437 0.99819 1.21581 0.98539 0.95841 0.99719 1.21473 0.99634 0.97716 0.96306 1.21852 0.99883 0.98085 0.96296 1.21108 0.98488 0.93521 0.82153 0.90370 1.45678 1.25229 1.49703 1.15303 1.19552 0.81712 0.79994 0.87444 1.90668 1.50710 1.33063 1.64131 1.20974 0.98492 0.85129 0.91285 0.89783 1.21854 0.96987 0.99963 0.97568 1.21489 1.01730 0.96735 0.95452 1.21963 0.97747 0.96571 1.01313 1.21619 0.96199 0.99966 0.82943 1.46994 1.70327 1.03968 1.14818 1.15982 0.80120 0.80642 0.83715 1.43197 1.65644 1.07920 1.27688 1.91188 1.47954 1.84350 1.18004 0.93635 0.78160 0.92562 0.91828 0.92927 0.92544 0.92209 0.92738 0.90777 0.92775 0.77025 0.89269 0.90616 0.91111 0.91473 0.91345 0.90721 0.90523 0.91192 0.78108 0.75813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.73 4.95 -53.43 -0.26 -18.00 16 10 C 0.17 3.46 2.29 -67.93 -0.16 3.31 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.13 -2.47 5.50 -26.73 -0.15 -2.61 16 13 C -0.12 -1.82 5.92 -26.73 -0.16 -1.98 16 14 C -0.11 -1.74 5.92 -26.73 -0.16 -1.90 16 15 C -0.12 -2.09 5.50 -26.71 -0.15 -2.24 16 16 C 0.15 2.91 1.98 -67.90 -0.13 2.78 16 17 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 18 N -0.71 -12.92 4.91 -53.78 -0.26 -13.19 16 19 C 0.53 9.80 4.94 -10.98 -0.05 9.75 16 20 O -0.51 -11.32 13.34 -20.17 -0.27 -11.59 16 21 C 0.15 2.13 3.30 -68.75 -0.23 1.91 16 22 H 0.08 1.08 7.96 -51.93 -0.41 0.66 16 23 C -0.12 -1.67 5.35 -26.61 -0.14 -1.82 16 24 C -0.12 -1.12 5.88 -26.69 -0.16 -1.27 16 25 C -0.14 -1.06 6.08 -26.61 -0.16 -1.22 16 26 C 0.12 0.92 6.43 -3.71 -0.02 0.89 16 27 N -0.62 -7.70 2.97 -172.23 -0.51 -8.21 16 28 C 0.70 10.09 8.19 -86.92 -0.71 9.38 16 29 N -0.87 -8.33 8.77 27.63 0.24 -8.09 16 30 O -0.54 -10.41 11.85 -20.44 -0.24 -10.65 16 31 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.38 10.41 7.80 -40.82 -0.32 10.09 16 33 H 0.06 1.10 8.14 -51.94 -0.42 0.68 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.44 7.62 -51.93 -0.40 1.04 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.40 6.82 8.47 -40.82 -0.35 6.48 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.42 5.58 -51.93 -0.29 0.13 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.39 2.44 6.32 -40.82 -0.26 2.18 16 51 H 0.41 3.54 8.93 -40.82 -0.36 3.18 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -34.78 391.91 -10.99 -45.77 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -8.66 Total: 19.90 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -2.62 Total: 8.04 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -0.07 Total: -74.41 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.51 Total: -22.24 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.78 -10.99 -45.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085389668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.057 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds