Wall clock time and date at job start Tue Mar 31 2020 22:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99802 * 2 1 4 4 H 1.48496 * 109.47326 * 270.00256 * 3 2 1 5 5 H 1.48504 * 109.47172 * 30.00731 * 3 2 1 6 6 H 1.48503 * 109.46969 * 150.00110 * 3 2 1 7 7 C 1.38812 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00148 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00105 * 359.71756 * 7 2 1 10 10 C 1.46493 * 120.00223 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47369 * 34.99851 * 10 9 7 12 12 C 1.53008 * 109.47046 * 275.00172 * 10 9 7 13 13 C 1.53002 * 109.46794 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47175 * 60.00499 * 13 12 10 15 15 C 1.52999 * 109.46894 * 299.99592 * 14 13 12 16 16 C 1.53000 * 109.47249 * 155.00472 * 10 9 7 17 17 H 1.08996 * 109.47236 * 60.00181 * 16 10 9 18 18 N 1.46503 * 109.46766 * 299.99590 * 16 10 9 19 19 C 1.34780 * 119.99257 * 155.00020 * 18 16 10 20 20 O 1.21277 * 120.00595 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99458 * 180.02562 * 19 18 16 22 22 H 1.09000 * 109.58721 * 349.44838 * 21 19 18 23 23 C 1.53189 * 109.58894 * 109.87990 * 21 19 18 24 24 C 1.53043 * 109.31349 * 174.41959 * 23 21 19 25 25 C 1.53035 * 109.53686 * 298.63839 * 24 23 21 26 26 C 1.53194 * 109.31919 * 61.36467 * 25 24 23 27 27 N 1.46929 * 109.58319 * 229.17194 * 21 19 18 28 28 C 1.34774 * 120.63371 * 6.61911 * 27 21 19 29 29 N 1.34774 * 120.00208 * 185.19719 * 28 27 21 30 30 O 1.21586 * 119.99732 * 5.20868 * 28 27 21 31 31 H 0.96995 * 120.00342 * 359.97438 * 1 2 3 32 32 H 0.97003 * 119.99690 * 0.02562 * 9 7 2 33 33 H 1.08989 * 109.47088 * 299.99819 * 12 10 9 34 34 H 1.09002 * 109.46896 * 60.00192 * 12 10 9 35 35 H 1.09008 * 109.46608 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.47518 * 300.00116 * 13 12 10 37 37 H 1.09003 * 109.47210 * 59.99429 * 14 13 12 38 38 H 1.09000 * 109.47127 * 179.97438 * 14 13 12 39 39 H 1.09004 * 109.47425 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.47059 * 299.99930 * 15 14 13 41 41 H 0.96995 * 120.00244 * 335.00806 * 18 16 10 42 42 H 1.08993 * 109.49565 * 294.37226 * 23 21 19 43 43 H 1.08998 * 109.49521 * 54.46743 * 23 21 19 44 44 H 1.09002 * 109.45967 * 178.61111 * 24 23 21 45 45 H 1.08998 * 109.44492 * 58.64673 * 24 23 21 46 46 H 1.08995 * 109.49844 * 301.40891 * 25 24 23 47 47 H 1.09004 * 109.52063 * 181.33395 * 25 24 23 48 48 H 1.08990 * 109.59055 * 185.57888 * 26 25 24 49 49 H 1.08994 * 109.58294 * 65.14825 * 26 25 24 50 50 H 0.96996 * 119.99741 * 4.93061 * 29 28 27 51 51 H 0.96999 * 119.99815 * 184.93314 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 0.0048 10 6 2.0581 -3.6567 0.0048 11 1 2.9710 -3.5492 0.5904 12 6 2.4164 -4.0387 -1.4329 13 6 3.1820 -5.3635 -1.4327 14 6 2.3076 -6.4578 -0.8172 15 6 1.9493 -6.0758 0.6204 16 6 1.1832 -4.7507 0.6201 17 1 0.2703 -4.8583 0.0344 18 7 0.8402 -4.3850 1.9967 19 6 -0.2757 -4.8806 2.5674 20 8 -0.9955 -5.6297 1.9416 21 6 -0.6290 -4.5040 3.9832 22 1 0.2119 -3.9856 4.4440 23 6 -1.8594 -3.5914 3.9801 24 6 -2.2962 -3.3258 5.4226 25 6 -2.6767 -4.6475 6.0937 26 6 -1.4555 -5.5721 6.1208 27 7 -0.9413 -5.7164 4.7520 28 6 -0.7592 -6.9379 4.2122 29 7 -1.1472 -8.0378 4.8875 30 8 -0.2448 -7.0474 3.1160 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0085 33 1 1.5035 -4.1463 -2.0185 34 1 3.0397 -3.2593 -1.8713 35 1 3.4376 -5.6354 -2.4569 36 1 4.0950 -5.2555 -0.8471 37 1 1.3946 -6.5657 -1.4028 38 1 2.8528 -7.4016 -0.8175 39 1 1.3267 -6.8555 1.0591 40 1 2.8623 -5.9678 1.2060 41 1 1.4160 -3.7861 2.4972 42 1 -1.6108 -2.6473 3.4955 43 1 -2.6708 -4.0767 3.4377 44 1 -3.1567 -2.6567 5.4241 45 1 -1.4756 -2.8632 5.9709 46 1 -3.4804 -5.1228 5.5315 47 1 -3.0103 -4.4554 7.1135 48 1 -1.7454 -6.5491 6.5071 49 1 -0.6838 -5.1394 6.7573 50 1 -1.6215 -7.9481 5.7288 51 1 -0.9520 -8.9190 4.5322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085389668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:06 Heat of formation + Delta-G solvation = -72.210162 kcal Electronic energy + Delta-G solvation = -31994.416222 eV Core-core repulsion = 27927.926925 eV Total energy + Delta-G solvation = -4066.489297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.98343 -40.37164 -38.86622 -38.21850 -35.79348 -34.97514 -34.75719 -33.32149 -32.96766 -32.22562 -30.47193 -29.27598 -26.63411 -25.60629 -24.87044 -23.38182 -22.59727 -22.35998 -21.35995 -20.92076 -20.40321 -19.42029 -18.97736 -17.95248 -17.52724 -17.29102 -16.65265 -16.34913 -15.92098 -15.82876 -15.62193 -15.38571 -15.29686 -15.17838 -14.80188 -14.62456 -14.57484 -14.30778 -14.10835 -13.94329 -13.68232 -13.40729 -13.21029 -12.90384 -12.77398 -12.53839 -12.22959 -12.16015 -12.12172 -12.02279 -12.00252 -11.75967 -11.65848 -11.61107 -11.44863 -11.05429 -10.93806 -10.78054 -10.61980 -10.25419 -9.70790 -9.44452 -8.96628 -7.87843 -5.17021 1.49786 1.51348 1.55796 1.59302 2.06730 2.36395 2.45827 2.59354 3.34382 3.44987 3.69635 3.74046 3.84210 3.87081 3.90468 4.07360 4.09818 4.16906 4.22982 4.28220 4.35386 4.45763 4.50891 4.53154 4.59666 4.61071 4.72749 4.79558 4.89704 4.94094 5.02316 5.08802 5.09478 5.17562 5.21005 5.24215 5.30454 5.31109 5.41996 5.48913 5.51133 5.55230 5.61060 5.82201 5.85690 6.10482 6.31365 6.80516 7.01346 7.37948 7.55733 7.83659 8.10964 8.37331 9.35330 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.004330 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.849682 B = 6464.392334 C = 8794.573776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.294 1.294 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.730 5.730 10 C 0.174 3.826 11 H 0.056 0.944 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.109 4.109 15 C -0.108 4.108 16 C 0.162 3.838 17 H 0.040 0.960 18 N -0.710 5.710 19 C 0.521 3.479 20 O -0.553 6.553 21 C 0.153 3.847 22 H 0.103 0.897 23 C -0.120 4.120 24 C -0.112 4.112 25 C -0.132 4.132 26 C 0.109 3.891 27 N -0.619 5.619 28 C 0.683 3.317 29 N -0.851 5.851 30 O -0.595 6.595 31 H 0.248 0.752 32 H 0.368 0.632 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.401 0.599 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.110 0.890 48 H 0.105 0.895 49 H 0.091 0.909 50 H 0.408 0.592 51 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -14.466 17.077 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.221 1.221 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.368 5.368 10 C 0.065 3.935 11 H 0.074 0.926 12 C -0.168 4.168 13 C -0.145 4.145 14 C -0.147 4.147 15 C -0.147 4.147 16 C 0.056 3.944 17 H 0.058 0.942 18 N -0.360 5.360 19 C 0.308 3.692 20 O -0.430 6.430 21 C 0.045 3.955 22 H 0.121 0.879 23 C -0.159 4.159 24 C -0.149 4.149 25 C -0.170 4.170 26 C -0.013 4.013 27 N -0.359 5.359 28 C 0.383 3.617 29 N -0.423 5.423 30 O -0.473 6.473 31 H 0.057 0.943 32 H 0.199 0.801 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.128 0.872 48 H 0.123 0.877 49 H 0.109 0.891 50 H 0.241 0.759 51 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.572 -14.793 15.940 21.754 hybrid contribution -0.314 1.136 -0.156 1.189 sum -0.886 -13.657 15.783 20.890 Atomic orbital electron populations 1.69847 1.06650 1.25702 1.59804 1.25465 0.96145 1.00729 1.04053 0.85208 0.77863 0.79970 0.77098 1.22142 1.22507 1.19142 1.19586 0.91354 0.84862 1.40536 0.90409 1.42553 1.05098 1.00657 1.88538 1.20643 0.93772 0.84440 0.94631 0.92640 1.22084 0.99395 0.97381 0.97944 1.21504 0.98259 0.93312 1.01456 1.21468 0.99610 0.99053 0.94601 1.21708 0.99435 0.95814 0.97792 1.20910 0.96805 0.94372 0.82276 0.94169 1.45716 1.25583 1.49772 1.14962 1.20311 0.80923 0.78973 0.89015 1.90633 1.51901 1.34871 1.65593 1.20888 0.99350 0.86331 0.88980 0.87948 1.21792 0.95756 0.98206 1.00171 1.21502 1.02444 0.98339 0.92650 1.21953 0.97227 0.95016 1.02774 1.22019 0.96780 1.01953 0.80498 1.47063 1.70102 1.02592 1.16166 1.16343 0.80032 0.81919 0.83456 1.42920 1.64645 1.06876 1.27893 1.91153 1.50386 1.85239 1.20531 0.94315 0.80093 0.94307 0.92838 0.90674 0.90960 0.93330 0.89948 0.93120 0.91399 0.76481 0.91590 0.93351 0.90559 0.89916 0.92614 0.87191 0.87658 0.89052 0.75909 0.75156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.35 13.06 21.65 0.28 -59.06 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.23 -12.57 9.93 84.03 0.83 -11.74 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.73 -37.00 4.95 -322.95 -1.60 -38.60 16 10 C 0.17 7.12 2.29 45.00 0.10 7.23 16 11 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 12 C -0.13 -4.76 5.50 30.60 0.17 -4.59 16 13 C -0.11 -3.08 5.92 30.60 0.18 -2.90 16 14 C -0.11 -3.23 5.92 30.59 0.18 -3.05 16 15 C -0.11 -3.74 5.50 30.61 0.17 -3.57 16 16 C 0.16 6.46 1.98 45.01 0.09 6.55 16 17 H 0.04 1.90 7.58 -2.39 -0.02 1.89 16 18 N -0.71 -27.09 4.91 -442.44 -2.17 -29.27 16 19 C 0.52 20.40 4.94 87.66 0.43 20.83 16 20 O -0.55 -26.18 13.34 21.58 0.29 -25.89 16 21 C 0.15 4.44 3.30 44.23 0.15 4.58 16 22 H 0.10 2.57 7.96 -2.39 -0.02 2.55 16 23 C -0.12 -3.34 5.35 30.67 0.16 -3.18 16 24 C -0.11 -1.97 5.88 30.62 0.18 -1.79 16 25 C -0.13 -1.65 6.08 30.67 0.19 -1.47 16 26 C 0.11 1.37 6.43 86.36 0.56 1.93 16 27 N -0.62 -14.78 2.97 -817.08 -2.43 -17.20 16 28 C 0.68 19.62 8.19 179.06 1.47 21.08 16 29 N -0.85 -14.92 8.77 -184.75 -1.62 -16.54 16 30 O -0.60 -23.67 11.85 20.61 0.24 -23.42 16 31 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.37 20.98 7.80 -92.71 -0.72 20.26 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 2.02 7.62 -2.38 -0.02 2.01 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.40 14.20 8.47 -92.71 -0.79 13.42 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.11 0.72 5.58 -2.39 -0.01 0.70 16 49 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.41 3.94 6.32 -92.71 -0.59 3.35 16 51 H 0.42 6.68 8.93 -92.71 -0.83 5.85 16 Total: -1.00 -80.32 391.91 -1.61 -81.93 By element: Atomic # 1 Polarization: 56.02 SS G_CDS: -1.96 Total: 54.07 kcal Atomic # 6 Polarization: 20.99 SS G_CDS: 5.32 Total: 26.32 kcal Atomic # 7 Polarization: -153.14 SS G_CDS: -7.54 Total: -160.67 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: 0.53 Total: -49.32 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -80.32 -1.61 -81.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085389668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.723 kcal (2) G-P(sol) polarization free energy of solvation -80.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds