Wall clock time and date at job start Tue Mar 31 2020 22:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99823 * 2 1 4 4 H 1.48500 * 109.47303 * 239.99862 * 3 2 1 5 5 H 1.48494 * 109.47582 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47056 * 119.99994 * 3 2 1 7 7 C 1.38816 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00130 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99564 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99769 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.46752 * 34.72704 * 10 9 7 12 12 C 1.52999 * 109.47168 * 274.72564 * 10 9 7 13 13 C 1.52997 * 109.46835 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47286 * 60.00220 * 13 12 10 15 15 C 1.52999 * 109.47003 * 299.99677 * 14 13 12 16 16 C 1.52997 * 109.47237 * 60.00412 * 15 14 13 17 17 H 1.09001 * 109.47487 * 59.99677 * 16 15 14 18 18 N 1.46495 * 109.47363 * 180.02562 * 16 15 14 19 19 C 1.34781 * 120.00061 * 274.99292 * 18 16 15 20 20 O 1.21289 * 119.99474 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00572 * 180.02562 * 19 18 16 22 22 C 1.53046 * 109.45515 * 300.07266 * 21 19 18 23 23 C 1.53194 * 109.30579 * 178.61153 * 22 21 19 24 24 N 1.46924 * 108.77776 * 54.63802 * 23 22 21 25 25 C 1.34770 * 120.63375 * 126.41107 * 24 23 22 26 26 N 1.34778 * 120.00147 * 354.94009 * 25 24 23 27 27 O 1.21587 * 120.00436 * 174.93931 * 25 24 23 28 28 C 1.46929 * 118.73776 * 306.38453 * 24 23 22 29 29 C 1.53039 * 109.46258 * 180.02562 * 21 19 18 30 30 H 0.97001 * 120.00289 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00492 * 359.72363 * 9 7 2 32 32 H 1.08997 * 109.47398 * 299.99744 * 12 10 9 33 33 H 1.08993 * 109.47240 * 59.99902 * 12 10 9 34 34 H 1.09001 * 109.47390 * 300.00017 * 13 12 10 35 35 H 1.09005 * 109.46814 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47374 * 180.02562 * 14 13 12 37 37 H 1.09005 * 109.47646 * 60.00041 * 14 13 12 38 38 H 1.09001 * 109.47145 * 299.99880 * 15 14 13 39 39 H 1.09002 * 109.47119 * 179.97438 * 15 14 13 40 40 H 0.97001 * 120.00418 * 94.99528 * 18 16 15 41 41 H 1.08998 * 109.45905 * 60.02538 * 21 19 18 42 42 H 1.08996 * 109.49785 * 298.55929 * 22 21 19 43 43 H 1.08995 * 109.49892 * 58.66260 * 22 21 19 44 44 H 1.08993 * 109.59098 * 294.84426 * 23 22 21 45 45 H 1.09004 * 109.58728 * 174.42008 * 23 22 21 46 46 H 0.96998 * 119.99986 * 5.05771 * 26 25 24 47 47 H 0.97001 * 119.99953 * 185.07051 * 26 25 24 48 48 H 1.08994 * 109.59016 * 293.82628 * 28 24 23 49 49 H 1.09000 * 109.59023 * 173.39487 * 28 24 23 50 50 H 1.08996 * 109.49784 * 301.33651 * 29 21 19 51 51 H 1.09003 * 109.49831 * 61.43483 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9712 -3.5490 0.5860 12 6 2.4160 -4.0390 -1.4370 13 6 3.1805 -5.3643 -1.4370 14 6 2.3053 -6.4579 -0.8214 15 6 1.9474 -6.0756 0.6162 16 6 1.1829 -4.7504 0.6163 17 1 0.2698 -4.8575 0.0307 18 7 0.8407 -4.3840 1.9928 19 6 -0.2751 -4.8789 2.5643 20 8 -0.9956 -5.6280 1.9391 21 6 -0.6275 -4.5017 3.9801 22 6 0.4975 -4.9415 4.9199 23 6 0.1517 -4.5256 6.3532 24 7 -1.1693 -5.0688 6.6976 25 6 -1.3367 -5.8158 7.8068 26 7 -0.2702 -6.1565 8.5572 27 8 -2.4498 -6.1824 8.1306 28 6 -2.3045 -4.7816 5.8102 29 6 -1.9310 -5.1950 4.3831 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0042 32 1 1.5030 -4.1467 -2.0225 33 1 3.0391 -3.2598 -1.8758 34 1 4.0936 -5.2571 -0.8515 35 1 3.4359 -5.6364 -2.4612 36 1 2.8501 -7.4020 -0.8209 37 1 1.3922 -6.5652 -1.4069 38 1 2.8605 -5.9684 1.2017 39 1 1.3235 -6.8545 1.0547 40 1 1.4171 -3.7852 2.4929 41 1 -0.7547 -3.4212 4.0471 42 1 0.6087 -6.0247 4.8722 43 1 1.4305 -4.4658 4.6181 44 1 0.1292 -3.4382 6.4228 45 1 0.9001 -4.9223 7.0394 46 1 0.6073 -5.8041 8.3412 47 1 -0.3802 -6.7543 9.3132 48 1 -2.5273 -3.7149 5.8354 49 1 -3.1768 -5.3471 6.1379 50 1 -2.7266 -4.8997 3.6992 51 1 -1.7964 -6.2758 4.3406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085417540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:03 Heat of formation + Delta-G solvation = -73.490672 kcal Electronic energy + Delta-G solvation = -30815.244930 eV Core-core repulsion = 26748.700106 eV Total energy + Delta-G solvation = -4066.544824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.69853 -39.75005 -38.18197 -36.93467 -34.18590 -34.08455 -33.79395 -32.62591 -31.19782 -31.06359 -29.33454 -27.79270 -26.01543 -23.76399 -23.51317 -22.66024 -21.57529 -21.08707 -20.12681 -19.74501 -19.36821 -18.60367 -17.29695 -17.15028 -16.69092 -16.00146 -15.60780 -15.30146 -15.03167 -14.76017 -14.58058 -14.23514 -14.08758 -13.73813 -13.71097 -13.51765 -13.42019 -13.04348 -12.97919 -12.67618 -12.63551 -12.15156 -12.08766 -11.81316 -11.49424 -11.11917 -10.95995 -10.90192 -10.86518 -10.80036 -10.76465 -10.58070 -10.37196 -10.35122 -10.23360 -9.93364 -9.79180 -9.67457 -9.43556 -8.96327 -8.80327 -8.57907 -7.03524 -5.82690 -3.12555 2.56741 2.94603 3.00398 3.37215 3.42797 3.44127 3.51026 3.83765 4.45824 4.51033 4.53761 4.69058 4.90443 5.03310 5.09377 5.12705 5.13263 5.24783 5.27231 5.37816 5.48265 5.49465 5.52980 5.58809 5.68540 5.70505 5.78243 5.82378 5.87325 5.92591 5.94173 5.95107 6.08987 6.23009 6.25591 6.29538 6.42635 6.45416 6.49126 6.55591 6.56449 6.67493 6.83455 6.88648 7.06314 7.61580 7.62078 7.91552 8.34418 8.39535 8.59027 9.46194 10.02678 10.38014 11.39055 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.003247 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.323503 B = 8620.103117 C =10392.217228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.049 0.951 12 C -0.134 4.134 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.122 4.122 16 C 0.140 3.860 17 H 0.083 0.917 18 N -0.706 5.706 19 C 0.519 3.481 20 O -0.549 6.549 21 C -0.108 4.108 22 C -0.125 4.125 23 C 0.113 3.887 24 N -0.627 5.627 25 C 0.710 3.290 26 N -0.870 5.870 27 O -0.596 6.596 28 C 0.128 3.872 29 C -0.112 4.112 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.402 0.598 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.396 0.604 47 H 0.412 0.588 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.086 0.914 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.108 -12.230 11.720 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.067 0.933 12 C -0.175 4.175 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.035 3.965 17 H 0.101 0.899 18 N -0.355 5.355 19 C 0.305 3.695 20 O -0.427 6.427 21 C -0.129 4.129 22 C -0.164 4.164 23 C -0.011 4.011 24 N -0.365 5.365 25 C 0.409 3.591 26 N -0.441 5.441 27 O -0.474 6.474 28 C 0.005 3.995 29 C -0.151 4.151 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.236 0.764 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.226 0.774 47 H 0.244 0.756 48 H 0.088 0.912 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.886 -12.738 11.352 17.499 hybrid contribution 1.022 1.333 0.244 1.698 sum 4.908 -11.405 11.596 16.989 Atomic orbital electron populations 1.69655 1.05069 1.25788 1.57159 1.24726 0.95428 0.97576 1.02861 0.86320 0.78538 0.83774 0.77800 1.21331 1.21756 1.21337 1.19147 0.90848 0.84028 1.43304 0.91305 1.42404 1.05795 0.99447 1.88553 1.20452 0.93886 0.85813 0.93515 0.93270 1.22222 0.99955 0.95496 0.99783 1.21577 0.98502 0.95708 0.99945 1.21472 0.99926 0.97988 0.95823 1.21857 0.99892 0.97317 0.97094 1.21286 0.99008 0.93872 0.82339 0.89904 1.45911 1.25358 1.49027 1.15199 1.20410 0.80627 0.80173 0.88276 1.90672 1.50508 1.36707 1.64794 1.21309 0.96683 1.02770 0.92163 1.21909 0.98117 1.02421 0.93916 1.21668 0.83922 0.99423 0.96062 1.47304 1.10422 1.54435 1.24348 1.15853 0.84532 0.78651 0.80032 1.43174 1.10057 1.55344 1.35478 1.90954 1.23356 1.60570 1.72542 1.21590 0.88647 1.01160 0.88120 1.21736 0.96662 1.01285 0.95391 0.93434 0.78137 0.92481 0.91635 0.92427 0.92710 0.92450 0.91985 0.92147 0.92052 0.76376 0.87896 0.90905 0.89840 0.90484 0.90298 0.77376 0.75602 0.91232 0.88560 0.89552 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.85 13.06 55.49 0.72 -26.13 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 8 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 9 N -0.72 -16.57 4.95 -53.42 -0.26 -16.83 16 10 C 0.17 3.12 2.29 -67.92 -0.16 2.96 16 11 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 12 C -0.13 -2.24 5.51 -26.73 -0.15 -2.39 16 13 C -0.12 -1.57 5.92 -26.74 -0.16 -1.73 16 14 C -0.11 -1.44 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.65 5.49 -26.73 -0.15 -1.80 16 16 C 0.14 2.26 1.98 -67.93 -0.13 2.12 16 17 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 18 N -0.71 -10.50 4.79 -53.81 -0.26 -10.76 16 19 C 0.52 7.92 7.12 -10.98 -0.08 7.84 16 20 O -0.55 -10.31 15.64 5.55 0.09 -10.22 16 21 C -0.11 -1.25 2.49 -91.73 -0.23 -1.48 16 22 C -0.12 -1.07 5.27 -26.61 -0.14 -1.21 16 23 C 0.11 0.82 6.43 -3.71 -0.02 0.79 16 24 N -0.63 -6.30 2.97 -178.50 -0.53 -6.83 16 25 C 0.71 8.18 8.57 -86.92 -0.75 7.43 16 26 N -0.87 -6.14 8.79 27.63 0.24 -5.90 16 27 O -0.60 -9.47 16.61 5.29 0.09 -9.38 16 28 C 0.13 1.39 6.42 -3.71 -0.02 1.36 16 29 C -0.11 -1.32 4.65 -26.61 -0.12 -1.45 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.38 9.83 7.80 -40.82 -0.32 9.51 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.40 5.56 8.00 -40.82 -0.33 5.23 16 41 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.62 7.52 -51.93 -0.39 0.23 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.36 5.57 -51.93 -0.29 0.07 16 46 H 0.40 1.71 6.29 -40.82 -0.26 1.46 16 47 H 0.41 2.42 8.93 -40.82 -0.36 2.06 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.10 1.17 7.04 -51.93 -0.37 0.80 16 50 H 0.09 1.10 8.07 -51.93 -0.42 0.68 16 51 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -33.61 398.01 -10.03 -43.64 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -8.58 Total: 15.94 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -2.51 Total: 4.16 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -0.09 Total: -66.45 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.17 Total: -19.60 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.61 -10.03 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085417540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.855 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds