Wall clock time and date at job start Tue Mar 31 2020 21:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00294 * 2 1 4 4 H 1.09004 * 109.47331 * 24.13045 * 3 2 1 5 5 C 1.50699 * 109.47342 * 144.13591 * 3 2 1 6 6 O 1.21280 * 120.00072 * 5.00012 * 5 3 2 7 7 N 1.34776 * 120.00222 * 184.99935 * 5 3 2 8 8 C 1.46920 * 120.63372 * 179.97438 * 7 5 3 9 9 C 1.53196 * 108.77799 * 233.58695 * 8 7 5 10 10 C 1.53041 * 109.31114 * 305.36409 * 9 8 7 11 11 O 1.42895 * 109.45806 * 181.38312 * 10 9 8 12 12 C 1.42902 * 113.99707 * 149.97017 * 11 10 9 13 13 C 1.53497 * 114.20265 * 150.00087 * 12 11 10 14 14 N 1.47067 * 87.98774 * 87.52296 * 13 12 11 15 15 C 1.36936 * 136.05451 * 206.86537 * 14 13 12 16 16 H 1.08000 * 120.00371 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99396 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00437 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99655 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47064 * 119.99979 * 19 17 15 22 22 H 1.48503 * 109.47100 * 239.99769 * 19 17 15 23 23 C 1.47068 * 87.88105 * 27.11981 * 14 13 12 24 24 C 1.53038 * 109.52745 * 61.36967 * 10 9 8 25 25 C 1.46928 * 120.62725 * 359.97438 * 7 5 3 26 26 C 1.53011 * 109.47084 * 264.13584 * 3 2 1 27 27 C 1.53003 * 117.49452 * 9.81271 * 26 3 2 28 28 C 1.53006 * 117.49383 * 301.19264 * 26 3 2 29 29 H 1.09000 * 109.47280 * 174.69438 * 1 2 3 30 30 H 1.09002 * 109.47003 * 294.69568 * 1 2 3 31 31 H 1.09000 * 109.47170 * 54.68969 * 1 2 3 32 32 H 1.09002 * 109.58691 * 113.79971 * 8 7 5 33 33 H 1.09000 * 109.70296 * 353.44418 * 8 7 5 34 34 H 1.09000 * 109.49600 * 185.41246 * 9 8 7 35 35 H 1.08999 * 109.49268 * 65.31426 * 9 8 7 36 36 H 1.08998 * 109.45609 * 301.35700 * 10 9 8 37 37 H 1.08996 * 113.28594 * 16.94164 * 12 11 10 38 38 H 1.09002 * 113.47093 * 332.73787 * 13 12 11 39 39 H 1.09006 * 113.52209 * 202.31127 * 13 12 11 40 40 H 0.96996 * 120.00165 * 180.02562 * 18 17 15 41 41 H 1.08995 * 113.46738 * 87.66410 * 23 14 13 42 42 H 1.09004 * 113.46194 * 218.09967 * 23 14 13 43 43 H 1.09004 * 109.49543 * 58.57933 * 24 10 9 44 44 H 1.08997 * 109.50156 * 178.67514 * 24 10 9 45 45 H 1.09000 * 109.58733 * 246.19901 * 25 7 5 46 46 H 1.08998 * 109.59237 * 6.48288 * 25 7 5 47 47 H 1.08995 * 115.55190 * 155.52262 * 26 3 2 48 48 H 1.09000 * 117.50332 * 0.02562 * 27 26 3 49 49 H 1.08998 * 117.49171 * 145.02606 * 27 26 3 50 50 H 1.09002 * 117.49399 * 214.97796 * 28 26 3 51 51 H 1.08994 * 117.50223 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3013 2.0189 0.4201 5 6 3.2665 1.2959 0.8324 6 8 3.6779 0.2542 1.2975 7 7 3.9328 2.4452 1.0600 8 6 5.1586 2.4520 1.8699 9 6 5.0027 3.4838 2.9916 10 6 4.6433 4.8416 2.3839 11 8 4.5287 5.8137 3.4250 12 6 4.8677 7.1416 3.0200 13 6 4.1161 8.2426 3.7809 14 7 5.1796 8.1954 4.7956 15 6 5.2793 8.4721 6.1330 16 1 4.4147 8.8210 6.6782 17 6 6.4917 8.3042 6.7879 18 7 7.5452 7.8786 6.1236 19 14 6.6279 8.6823 8.6122 20 1 5.3112 9.1422 9.1221 21 1 7.0414 7.4570 9.3421 22 1 7.6396 9.7489 8.8224 23 6 6.0904 7.7265 3.7403 24 6 3.3106 4.7323 1.6395 25 6 3.4471 3.7150 0.5028 26 6 2.3524 1.7113 -1.4351 27 6 1.8288 0.8220 -2.5646 28 6 3.3177 0.8138 -2.2120 29 1 -0.3634 -1.0232 -0.0950 30 1 -0.3633 0.4294 0.9337 31 1 -0.3633 0.5940 -0.8386 32 1 6.0092 2.7195 1.2430 33 1 5.3192 1.4642 2.3018 34 1 5.9402 3.5679 3.5413 35 1 4.2100 3.1672 3.6694 36 1 5.4244 5.1458 1.6873 37 1 4.8773 7.2729 1.9381 38 1 3.1434 7.9245 4.1563 39 1 4.0708 9.1898 3.2432 40 1 8.3922 7.7609 6.5813 41 1 6.5717 8.5357 3.1912 42 1 6.7965 6.9694 4.0814 43 1 2.5340 4.4038 2.3303 44 1 3.0434 5.7051 1.2269 45 1 4.1579 4.0856 -0.2358 46 1 2.4771 3.5596 0.0304 47 1 2.4027 2.7842 -1.6208 48 1 1.2404 -0.0520 -2.2855 49 1 1.5345 1.3098 -3.4938 50 1 4.0027 1.2962 -2.9092 51 1 3.7093 -0.0656 -1.7007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093532953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:50 Heat of formation + Delta-G solvation = -22.685196 kcal Electronic energy + Delta-G solvation = -30495.283446 eV Core-core repulsion = 26398.648962 eV Total energy + Delta-G solvation = -4096.634484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.84400 -39.16241 -38.39039 -37.24481 -36.25460 -35.30586 -32.30443 -31.76506 -31.20874 -29.13402 -27.53778 -26.52425 -24.90757 -24.57840 -23.50287 -22.96313 -22.69498 -21.76274 -20.68620 -19.52982 -19.22106 -17.64847 -17.27060 -16.86501 -16.71662 -16.13838 -15.74787 -15.22248 -14.97648 -14.93804 -14.72083 -14.46820 -14.35228 -13.93533 -13.66130 -13.52476 -13.41306 -13.11761 -12.84826 -12.65494 -12.31137 -12.13491 -12.02333 -11.78443 -11.75578 -11.67809 -11.37997 -11.15371 -10.98811 -10.96358 -10.83550 -10.75288 -10.51910 -10.32718 -10.22157 -10.16101 -9.79387 -9.58452 -9.39865 -8.86834 -8.79186 -8.65057 -6.82461 -5.70809 -3.02184 2.39859 2.51006 3.30313 3.42588 3.47400 3.50246 3.53456 3.95663 4.14866 4.29488 4.46090 4.48816 4.50278 4.71950 4.76671 4.82958 4.87594 4.90400 5.01036 5.05854 5.12639 5.13620 5.26866 5.30126 5.34418 5.35989 5.42104 5.43787 5.50033 5.50498 5.53344 5.69320 5.73234 5.80089 5.84925 5.86470 5.92429 6.10413 6.27888 6.38368 6.39533 6.56740 6.58042 6.66069 6.99889 7.17817 7.25997 7.58952 7.94734 7.99706 8.06801 9.09316 9.76309 10.69416 11.47085 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.002234 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.686129 B =12529.207803 C =12771.375383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.102 3.898 4 H 0.091 0.909 5 C 0.522 3.478 6 O -0.522 6.522 7 N -0.606 5.606 8 C 0.117 3.883 9 C -0.131 4.131 10 C 0.091 3.909 11 O -0.338 6.338 12 C 0.031 3.969 13 C 0.113 3.887 14 N -0.602 5.602 15 C -0.211 4.211 16 H 0.081 0.919 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.136 3.864 24 C -0.159 4.159 25 C 0.107 3.893 26 C -0.189 4.189 27 C -0.164 4.164 28 C -0.164 4.164 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.252 0.748 41 H 0.031 0.969 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.120 0.880 48 H 0.103 0.897 49 H 0.095 0.905 50 H 0.095 0.905 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 -12.207 -20.500 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.273 6.273 3 C 0.041 3.959 4 H 0.109 0.891 5 C 0.308 3.692 6 O -0.397 6.397 7 N -0.342 5.342 8 C -0.005 4.005 9 C -0.169 4.169 10 C 0.032 3.968 11 O -0.256 6.256 12 C -0.027 4.027 13 C -0.013 4.013 14 N -0.328 5.328 15 C -0.338 4.338 16 H 0.098 0.902 17 C -0.206 4.206 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.010 3.990 24 C -0.197 4.197 25 C -0.016 4.016 26 C -0.208 4.208 27 C -0.201 4.201 28 C -0.201 4.201 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.138 0.862 48 H 0.121 0.879 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.060 -12.978 -19.705 26.498 hybrid contribution 0.010 0.892 0.728 1.152 sum -12.050 -12.086 -18.977 25.522 Atomic orbital electron populations 1.22945 0.80520 1.03249 1.00377 1.88019 1.19763 1.24917 1.94583 1.21375 0.94143 0.86870 0.93549 0.89120 1.20268 0.84938 0.83503 0.80472 1.90711 1.67618 1.30880 1.50527 1.48041 1.26840 1.07081 1.52225 1.21632 0.85443 1.01145 0.92270 1.21976 1.04014 0.93058 0.97881 1.21986 0.95073 0.89711 0.90012 1.88059 1.87926 1.15599 1.34042 1.23949 1.00526 0.83009 0.95261 1.22652 0.94308 0.94038 0.90349 1.45394 1.06580 1.77855 1.02992 1.18945 0.95673 1.37778 0.81422 0.90172 1.24770 0.95616 1.02074 0.98143 1.69832 1.00446 1.51891 1.34653 0.86043 0.77421 0.77498 0.84800 1.20489 1.21697 1.21831 1.22574 0.93108 0.95971 0.87375 1.22512 1.00055 0.99292 0.97866 1.21888 1.00255 0.83470 0.95985 1.22854 1.08090 0.98224 0.91593 1.22957 0.97522 1.01941 0.97679 1.22916 0.92745 1.01877 1.02557 0.89108 0.93709 0.93455 0.91092 0.88499 0.89331 0.90768 0.92162 0.92072 0.93656 0.94037 0.93827 0.95120 0.90483 0.90679 0.90214 0.90807 0.89631 0.86196 0.87868 0.88676 0.88625 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.99 101.05 1.01 1.18 16 2 O -0.36 -3.81 8.58 -55.09 -0.47 -4.28 16 3 C 0.10 0.96 2.14 -27.88 -0.06 0.90 16 4 H 0.09 0.68 7.05 -51.93 -0.37 0.32 16 5 C 0.52 6.50 6.80 -10.99 -0.07 6.43 16 6 O -0.52 -8.68 15.92 -14.30 -0.23 -8.91 16 7 N -0.61 -6.55 2.97 -172.79 -0.51 -7.06 16 8 C 0.12 1.35 6.43 -3.71 -0.02 1.33 16 9 C -0.13 -1.76 5.73 -26.61 -0.15 -1.91 16 10 C 0.09 1.24 2.46 -26.69 -0.07 1.17 16 11 O -0.34 -6.39 10.04 -35.23 -0.35 -6.74 16 12 C 0.03 0.59 4.50 -26.22 -0.12 0.47 16 13 C 0.11 2.35 8.52 -8.52 -0.07 2.28 16 14 N -0.60 -15.97 3.78 -184.81 -0.70 -16.67 16 15 C -0.21 -6.12 10.75 -15.06 -0.16 -6.28 16 16 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 17 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 18 N -0.92 -27.99 11.51 55.49 0.64 -27.36 16 19 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.14 3.23 7.25 -8.52 -0.06 3.17 16 24 C -0.16 -1.66 5.69 -26.63 -0.15 -1.81 16 25 C 0.11 0.87 5.49 -3.73 -0.02 0.85 16 26 C -0.19 -1.38 4.84 -90.61 -0.44 -1.82 16 27 C -0.16 -1.11 9.50 -26.73 -0.25 -1.36 16 28 C -0.16 -1.33 9.83 -26.72 -0.26 -1.59 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.24 7.62 -51.93 -0.40 -0.15 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.24 7.01 -51.93 -0.36 0.87 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.76 7.71 -51.93 -0.40 0.36 16 37 H 0.06 0.91 7.76 -51.93 -0.40 0.51 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 2.06 7.12 -51.93 -0.37 1.69 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.52 4.47 -51.93 -0.23 0.29 16 47 H 0.12 0.66 6.53 -51.93 -0.34 0.32 16 48 H 0.10 0.76 6.30 -51.93 -0.33 0.43 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -36.18 400.78 -10.28 -46.46 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.66 Total: -1.80 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.00 Total: 2.62 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.57 Total: -51.09 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.05 Total: -19.93 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.18 -10.28 -46.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093532953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.772 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds