Wall clock time and date at job start Tue Mar 31 2020 21:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00294 * 2 1 4 4 H 1.09004 * 109.47331 * 24.13045 * 3 2 1 5 5 C 1.50699 * 109.47342 * 144.13591 * 3 2 1 6 6 O 1.21280 * 120.00072 * 5.00012 * 5 3 2 7 7 N 1.34776 * 120.00222 * 184.99935 * 5 3 2 8 8 C 1.46920 * 120.63372 * 179.97438 * 7 5 3 9 9 C 1.53196 * 108.77799 * 233.58695 * 8 7 5 10 10 C 1.53041 * 109.31114 * 305.36409 * 9 8 7 11 11 O 1.42895 * 109.45806 * 181.38312 * 10 9 8 12 12 C 1.42902 * 113.99707 * 149.97017 * 11 10 9 13 13 C 1.53497 * 114.20265 * 150.00087 * 12 11 10 14 14 N 1.47067 * 87.98774 * 87.52296 * 13 12 11 15 15 C 1.36936 * 136.05451 * 206.86537 * 14 13 12 16 16 H 1.08000 * 120.00371 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99396 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00437 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99655 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47064 * 119.99979 * 19 17 15 22 22 H 1.48503 * 109.47100 * 239.99769 * 19 17 15 23 23 C 1.47068 * 87.88105 * 27.11981 * 14 13 12 24 24 C 1.53038 * 109.52745 * 61.36967 * 10 9 8 25 25 C 1.46928 * 120.62725 * 359.97438 * 7 5 3 26 26 C 1.53011 * 109.47084 * 264.13584 * 3 2 1 27 27 C 1.53003 * 117.49452 * 9.81271 * 26 3 2 28 28 C 1.53006 * 117.49383 * 301.19264 * 26 3 2 29 29 H 1.09000 * 109.47280 * 174.69438 * 1 2 3 30 30 H 1.09002 * 109.47003 * 294.69568 * 1 2 3 31 31 H 1.09000 * 109.47170 * 54.68969 * 1 2 3 32 32 H 1.09002 * 109.58691 * 113.79971 * 8 7 5 33 33 H 1.09000 * 109.70296 * 353.44418 * 8 7 5 34 34 H 1.09000 * 109.49600 * 185.41246 * 9 8 7 35 35 H 1.08999 * 109.49268 * 65.31426 * 9 8 7 36 36 H 1.08998 * 109.45609 * 301.35700 * 10 9 8 37 37 H 1.08996 * 113.28594 * 16.94164 * 12 11 10 38 38 H 1.09002 * 113.47093 * 332.73787 * 13 12 11 39 39 H 1.09006 * 113.52209 * 202.31127 * 13 12 11 40 40 H 0.96996 * 120.00165 * 180.02562 * 18 17 15 41 41 H 1.08995 * 113.46738 * 87.66410 * 23 14 13 42 42 H 1.09004 * 113.46194 * 218.09967 * 23 14 13 43 43 H 1.09004 * 109.49543 * 58.57933 * 24 10 9 44 44 H 1.08997 * 109.50156 * 178.67514 * 24 10 9 45 45 H 1.09000 * 109.58733 * 246.19901 * 25 7 5 46 46 H 1.08998 * 109.59237 * 6.48288 * 25 7 5 47 47 H 1.08995 * 115.55190 * 155.52262 * 26 3 2 48 48 H 1.09000 * 117.50332 * 0.02562 * 27 26 3 49 49 H 1.08998 * 117.49171 * 145.02606 * 27 26 3 50 50 H 1.09002 * 117.49399 * 214.97796 * 28 26 3 51 51 H 1.08994 * 117.50223 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3013 2.0189 0.4201 5 6 3.2665 1.2959 0.8324 6 8 3.6779 0.2542 1.2975 7 7 3.9328 2.4452 1.0600 8 6 5.1586 2.4520 1.8699 9 6 5.0027 3.4838 2.9916 10 6 4.6433 4.8416 2.3839 11 8 4.5287 5.8137 3.4250 12 6 4.8677 7.1416 3.0200 13 6 4.1161 8.2426 3.7809 14 7 5.1796 8.1954 4.7956 15 6 5.2793 8.4721 6.1330 16 1 4.4147 8.8210 6.6782 17 6 6.4917 8.3042 6.7879 18 7 7.5452 7.8786 6.1236 19 14 6.6279 8.6823 8.6122 20 1 5.3112 9.1422 9.1221 21 1 7.0414 7.4570 9.3421 22 1 7.6396 9.7489 8.8224 23 6 6.0904 7.7265 3.7403 24 6 3.3106 4.7323 1.6395 25 6 3.4471 3.7150 0.5028 26 6 2.3524 1.7113 -1.4351 27 6 1.8288 0.8220 -2.5646 28 6 3.3177 0.8138 -2.2120 29 1 -0.3634 -1.0232 -0.0950 30 1 -0.3633 0.4294 0.9337 31 1 -0.3633 0.5940 -0.8386 32 1 6.0092 2.7195 1.2430 33 1 5.3192 1.4642 2.3018 34 1 5.9402 3.5679 3.5413 35 1 4.2100 3.1672 3.6694 36 1 5.4244 5.1458 1.6873 37 1 4.8773 7.2729 1.9381 38 1 3.1434 7.9245 4.1563 39 1 4.0708 9.1898 3.2432 40 1 8.3922 7.7609 6.5813 41 1 6.5717 8.5357 3.1912 42 1 6.7965 6.9694 4.0814 43 1 2.5340 4.4038 2.3303 44 1 3.0434 5.7051 1.2269 45 1 4.1579 4.0856 -0.2358 46 1 2.4771 3.5596 0.0304 47 1 2.4027 2.7842 -1.6208 48 1 1.2404 -0.0520 -2.2855 49 1 1.5345 1.3098 -3.4938 50 1 4.0027 1.2962 -2.9092 51 1 3.7093 -0.0656 -1.7007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093532953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:48 Heat of formation + Delta-G solvation = -46.517660 kcal Electronic energy + Delta-G solvation = -30496.316899 eV Core-core repulsion = 26398.648962 eV Total energy + Delta-G solvation = -4097.667937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.69494 -40.42793 -39.42202 -38.40933 -36.95456 -36.54824 -34.17268 -33.01681 -32.14380 -29.91134 -29.47060 -27.14042 -26.33789 -25.87018 -25.02299 -24.18696 -23.28210 -22.55652 -21.48596 -21.13049 -20.18902 -18.85720 -18.39109 -17.95539 -17.52385 -17.46341 -16.95306 -16.62234 -16.08887 -15.88966 -15.66733 -15.58716 -15.42365 -15.20930 -15.06725 -14.64814 -14.52994 -14.24698 -13.87613 -13.79509 -13.54506 -13.28726 -13.18111 -12.90793 -12.84543 -12.67260 -12.46921 -12.34427 -12.27810 -12.24533 -12.18661 -11.83134 -11.65606 -11.62317 -11.45827 -11.30629 -11.13449 -10.92364 -10.82101 -10.42619 -10.12421 -9.76506 -8.88969 -7.89411 -5.20971 1.42711 1.44771 1.49762 1.54544 1.70540 2.47207 2.67816 2.74088 2.90073 3.32913 3.48996 3.52423 3.63558 3.69083 3.84985 3.87999 3.90325 4.02403 4.14234 4.17706 4.23896 4.28516 4.30924 4.33278 4.42992 4.51629 4.54692 4.58585 4.65103 4.75985 4.80670 4.82009 4.84702 4.86068 4.86483 4.96992 5.00840 5.01699 5.14700 5.18909 5.20456 5.28160 5.32329 5.37496 5.46657 5.53573 5.97227 6.03255 6.35334 6.63312 6.92925 7.09317 7.62076 8.63392 9.28525 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.002234 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.686129 B =12529.207803 C =12771.375383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.388 6.388 3 C 0.102 3.898 4 H 0.115 0.885 5 C 0.514 3.486 6 O -0.577 6.577 7 N -0.603 5.603 8 C 0.124 3.876 9 C -0.126 4.126 10 C 0.083 3.917 11 O -0.374 6.374 12 C 0.066 3.934 13 C 0.112 3.888 14 N -0.641 5.641 15 C -0.222 4.222 16 H 0.082 0.918 17 C -0.073 4.073 18 N -0.954 5.954 19 Si 0.978 3.022 20 H -0.265 1.265 21 H -0.294 1.294 22 H -0.290 1.290 23 C 0.127 3.873 24 C -0.149 4.149 25 C 0.106 3.894 26 C -0.182 4.182 27 C -0.152 4.152 28 C -0.180 4.180 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.246 0.754 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.115 0.885 47 H 0.151 0.849 48 H 0.094 0.906 49 H 0.119 0.881 50 H 0.110 0.890 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 -10.791 -23.245 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.306 6.306 3 C 0.041 3.959 4 H 0.132 0.868 5 C 0.302 3.698 6 O -0.457 6.457 7 N -0.337 5.337 8 C 0.001 3.999 9 C -0.165 4.165 10 C 0.026 3.974 11 O -0.293 6.293 12 C 0.007 3.993 13 C -0.013 4.013 14 N -0.368 5.368 15 C -0.350 4.350 16 H 0.099 0.901 17 C -0.265 4.265 18 N -0.604 5.604 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.222 1.222 22 H -0.217 1.217 23 C 0.001 3.999 24 C -0.188 4.188 25 C -0.015 4.015 26 C -0.200 4.200 27 C -0.189 4.189 28 C -0.217 4.217 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.133 0.867 47 H 0.168 0.832 48 H 0.112 0.888 49 H 0.137 0.863 50 H 0.128 0.872 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.346 -11.530 -22.490 29.061 hybrid contribution 0.674 0.398 1.572 1.756 sum -13.672 -11.132 -20.918 27.357 Atomic orbital electron populations 1.23125 0.78738 1.04269 1.01389 1.87991 1.21812 1.26011 1.94783 1.21486 0.92846 0.87099 0.94449 0.86760 1.21002 0.85688 0.82998 0.80078 1.90681 1.69199 1.32938 1.52838 1.48140 1.26144 1.07964 1.51453 1.21466 0.86871 0.99367 0.92155 1.21893 1.02186 0.94211 0.98170 1.22283 0.97819 0.87960 0.89354 1.88025 1.87735 1.16382 1.37114 1.23609 0.95837 0.82525 0.97338 1.22894 0.93156 0.96032 0.89195 1.45813 1.09469 1.78213 1.03286 1.19327 0.95696 1.36565 0.83421 0.90066 1.25628 0.95527 1.02868 1.02499 1.70026 1.00656 1.53570 1.36102 0.85013 0.77828 0.76866 0.79686 1.18892 1.22175 1.21663 1.22660 0.94148 0.95379 0.87739 1.22430 0.97230 1.01199 0.97909 1.22172 1.02591 0.81263 0.95461 1.22957 1.07337 0.99612 0.90126 1.23016 0.95998 1.01558 0.98283 1.22860 0.94006 1.01427 1.03454 0.88504 0.93507 0.91270 0.89085 0.90522 0.91376 0.92897 0.90417 0.86637 0.93498 0.91203 0.94493 0.94968 0.94748 0.92077 0.87856 0.88116 0.86669 0.83163 0.88784 0.86309 0.87191 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.99 113.37 1.13 1.38 16 2 O -0.39 -8.00 8.58 -129.99 -1.12 -9.11 16 3 C 0.10 1.71 2.14 29.85 0.06 1.77 16 4 H 0.11 1.32 7.05 -2.38 -0.02 1.31 16 5 C 0.51 12.50 6.80 87.66 0.60 13.09 16 6 O -0.58 -20.04 15.92 15.96 0.25 -19.78 16 7 N -0.60 -12.01 2.97 -818.98 -2.43 -14.45 16 8 C 0.12 2.85 6.43 86.36 0.56 3.41 16 9 C -0.13 -3.45 5.73 30.67 0.18 -3.27 16 10 C 0.08 2.10 2.46 30.62 0.08 2.18 16 11 O -0.37 -13.68 10.04 -148.98 -1.50 -15.18 16 12 C 0.07 2.29 4.50 30.93 0.14 2.43 16 13 C 0.11 4.41 8.52 83.17 0.71 5.12 16 14 N -0.64 -34.04 3.78 -739.09 -2.80 -36.84 16 15 C -0.22 -13.02 10.75 84.03 0.90 -12.11 16 16 H 0.08 4.58 7.83 -2.91 -0.02 4.55 16 17 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 18 N -0.95 -59.91 11.51 21.65 0.25 -59.66 16 19 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 23 C 0.13 6.03 7.25 83.17 0.60 6.63 16 24 C -0.15 -2.55 5.69 30.66 0.17 -2.38 16 25 C 0.11 1.27 5.49 86.35 0.47 1.75 16 26 C -0.18 -2.03 4.84 -10.79 -0.05 -2.09 16 27 C -0.15 -1.60 9.50 30.60 0.29 -1.31 16 28 C -0.18 -2.61 9.83 30.60 0.30 -2.31 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.51 7.62 -2.39 -0.02 0.49 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 2.09 7.01 -2.39 -0.02 2.08 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.71 7.71 -2.39 -0.02 1.69 16 37 H 0.12 2.83 7.76 -2.39 -0.02 2.81 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.03 1.90 7.12 -2.38 -0.02 1.89 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.12 0.76 4.47 -2.39 -0.01 0.75 16 47 H 0.15 0.76 6.53 -2.39 -0.02 0.75 16 48 H 0.09 1.19 6.30 -2.39 -0.02 1.17 16 49 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -84.53 400.78 2.21 -82.33 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.91 Total: 12.57 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.61 Total: 10.44 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -4.98 Total: -110.94 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -2.36 Total: -44.07 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -84.53 2.21 -82.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093532953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.807 kcal (2) G-P(sol) polarization free energy of solvation -84.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds