Wall clock time and date at job start Tue Mar 31 2020 21:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99602 * 2 1 4 4 C 1.52999 * 109.47022 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.54373 * 300.00011 * 4 3 2 6 6 O 1.21284 * 119.99936 * 239.99796 * 5 4 3 7 7 N 1.34773 * 120.00047 * 59.99899 * 5 4 3 8 8 C 1.46497 * 119.99946 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.68367 * 36.75784 * 8 7 5 10 10 C 1.56688 * 110.35337 * 159.70733 * 8 7 5 11 11 C 1.55846 * 102.59888 * 118.78327 * 10 8 7 12 12 H 1.09004 * 115.55749 * 159.08667 * 11 10 8 13 13 C 1.55846 * 105.06355 * 287.69592 * 11 10 8 14 14 C 1.54852 * 103.44011 * 72.57917 * 13 11 10 15 15 C 1.55839 * 110.62807 * 273.76288 * 8 7 5 16 16 H 1.08998 * 116.12827 * 82.36700 * 15 8 7 17 17 N 1.50240 * 101.75329 * 32.69393 * 11 10 8 18 18 C 1.36930 * 130.83891 * 125.87265 * 17 11 10 19 19 H 1.07998 * 120.00215 * 179.97438 * 18 17 11 20 20 C 1.38810 * 120.00097 * 359.95866 * 18 17 11 21 21 N 1.31617 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00069 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47178 * 90.00015 * 22 20 18 24 24 H 1.48503 * 109.46871 * 210.00260 * 22 20 18 25 25 H 1.48502 * 109.46923 * 329.99497 * 22 20 18 26 26 C 1.53170 * 109.54301 * 60.17926 * 4 3 2 27 27 C 1.53286 * 109.06242 * 176.85334 * 26 4 3 28 28 O 1.42898 * 109.45980 * 302.44110 * 27 26 4 29 29 C 1.42902 * 114.09757 * 61.15874 * 28 27 26 30 30 C 1.53089 * 109.41718 * 298.84140 * 29 28 27 31 31 H 1.08998 * 109.47427 * 60.00168 * 1 2 3 32 32 H 1.09009 * 109.46863 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47452 * 299.99481 * 1 2 3 34 34 H 1.09005 * 109.47111 * 60.00133 * 3 2 1 35 35 H 1.08993 * 109.47265 * 300.00146 * 3 2 1 36 36 H 0.97005 * 120.00048 * 0.02562 * 7 5 4 37 37 H 1.08997 * 111.44033 * 0.38690 * 10 8 7 38 38 H 1.09009 * 110.61902 * 236.80444 * 10 8 7 39 39 H 1.08995 * 110.62505 * 314.08969 * 13 11 10 40 40 H 1.08998 * 110.75944 * 191.12946 * 13 11 10 41 41 H 1.09005 * 110.62529 * 241.50600 * 14 13 11 42 42 H 1.08997 * 110.76179 * 118.55817 * 14 13 11 43 43 H 0.97003 * 120.00106 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.52492 * 296.83978 * 26 4 3 45 45 H 1.09001 * 109.52794 * 57.03135 * 26 4 3 46 46 H 1.09003 * 109.45525 * 182.45045 * 27 26 4 47 47 H 1.08994 * 109.46853 * 62.44770 * 27 26 4 48 48 H 1.09000 * 109.48529 * 178.85682 * 29 28 27 49 49 H 1.09002 * 109.49250 * 58.82903 * 29 28 27 50 50 H 1.08998 * 109.52216 * 297.70421 * 30 29 28 51 51 H 1.09001 * 109.57518 * 177.54178 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 3.9824 0.4369 1.2289 6 8 4.7249 0.9697 2.0263 7 7 3.5571 -0.8240 1.4425 8 6 3.9921 -1.5512 2.6376 9 1 4.0619 -0.8793 3.4930 10 6 3.0130 -2.7362 2.9410 11 6 3.9428 -3.9821 2.8310 12 1 3.5875 -4.8801 3.3365 13 6 4.2325 -4.1380 1.3076 14 6 5.1958 -2.9646 1.0025 15 6 5.3567 -2.2594 2.3829 16 1 6.2469 -1.6402 2.4938 17 7 5.2525 -3.4305 3.3183 18 6 6.0928 -3.8624 4.3094 19 1 7.0060 -3.3241 4.5159 20 6 5.7708 -4.9921 5.0490 21 7 4.6575 -5.6477 4.7980 22 14 6.9176 -5.5818 6.4007 23 1 6.5414 -4.9379 7.6848 24 1 6.8069 -7.0566 6.5352 25 1 8.3160 -5.2198 6.0562 26 6 3.9890 0.4290 -1.2533 27 6 5.5209 0.3830 -1.2830 28 8 6.0378 1.7149 -1.2542 29 6 5.6834 2.4531 -0.0830 30 6 4.1601 2.5835 -0.0051 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.6885 1.8465 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 2.9635 -1.2503 0.8046 37 1 2.2113 -2.7892 2.2044 38 1 2.6052 -2.6490 3.9481 39 1 3.3134 -4.0405 0.7300 40 1 4.7144 -5.0938 1.1019 41 1 4.7543 -2.2851 0.2734 42 1 6.1567 -3.3360 0.6466 43 1 4.4327 -6.4374 5.3146 44 1 3.5924 -0.5860 -1.2299 45 1 3.6231 0.9436 -2.1418 46 1 5.8515 -0.1155 -2.1941 47 1 5.8846 -0.1669 -0.4151 48 1 6.1312 3.4458 -0.1296 49 1 6.0492 1.9305 0.8009 50 1 3.7976 3.1415 -0.8684 51 1 3.8848 3.1083 0.9097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109380835.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:10 Heat of formation + Delta-G solvation = -79.781707 kcal Electronic energy + Delta-G solvation = -32759.523664 eV Core-core repulsion = 28660.413289 eV Total energy + Delta-G solvation = -4099.110375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.99563 -39.17383 -37.96056 -37.58514 -34.25010 -33.82367 -32.27769 -31.10146 -29.19737 -28.96317 -28.45997 -27.45370 -26.22014 -24.34066 -23.67065 -23.32443 -22.17088 -21.10071 -19.70891 -19.15309 -18.47527 -17.14446 -16.68595 -16.60984 -16.53686 -15.98154 -15.82727 -15.33405 -14.94164 -14.87645 -14.64134 -14.55883 -14.02885 -13.81103 -13.73159 -13.49282 -12.64034 -12.53283 -12.37180 -12.27612 -12.10024 -12.05310 -11.69500 -11.57506 -11.43950 -11.34974 -11.02056 -10.87756 -10.87092 -10.79052 -10.74368 -10.51056 -10.17297 -10.06292 -9.99169 -9.78594 -9.65213 -9.37271 -9.22980 -9.09444 -8.90366 -8.38659 -6.87869 -5.70075 -3.07908 2.85011 3.35736 3.41589 3.46420 3.47824 3.54856 3.89386 4.41505 4.46831 4.53399 4.66788 4.91083 4.95817 5.05591 5.08071 5.16260 5.18046 5.25389 5.27885 5.41714 5.45939 5.50174 5.52320 5.55651 5.60681 5.66869 5.75909 5.85660 5.88943 5.91928 5.95517 6.01310 6.09166 6.13500 6.17714 6.38584 6.39253 6.58551 6.65892 6.77549 6.80937 6.86600 7.02323 7.06249 7.19793 7.32125 7.55491 7.79840 7.99646 8.20322 8.62375 9.13192 9.75723 10.56731 11.39362 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.003751 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.984143 B = 7462.106056 C = 8267.372942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.389 6.389 3 C 0.076 3.924 4 C -0.079 4.079 5 C 0.519 3.481 6 O -0.546 6.546 7 N -0.695 5.695 8 C 0.127 3.873 9 H 0.078 0.922 10 C -0.139 4.139 11 C 0.154 3.846 12 H 0.153 0.847 13 C -0.136 4.136 14 C -0.130 4.130 15 C 0.129 3.871 16 H 0.083 0.917 17 N -0.589 5.589 18 C -0.208 4.208 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.924 5.924 22 Si 0.916 3.084 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.137 4.137 27 C 0.056 3.944 28 O -0.385 6.385 29 C 0.051 3.949 30 C -0.125 4.125 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.403 0.597 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.253 0.747 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.056 0.944 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 13.351 -14.091 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.307 6.307 3 C -0.001 4.001 4 C -0.083 4.083 5 C 0.304 3.696 6 O -0.425 6.425 7 N -0.347 5.347 8 C 0.021 3.979 9 H 0.097 0.903 10 C -0.179 4.179 11 C 0.047 3.953 12 H 0.170 0.830 13 C -0.176 4.176 14 C -0.170 4.170 15 C 0.020 3.980 16 H 0.101 0.899 17 N -0.310 5.310 18 C -0.336 4.336 19 H 0.096 0.904 20 C -0.207 4.207 21 N -0.572 5.572 22 Si 0.747 3.253 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.175 4.175 27 C -0.021 4.021 28 O -0.304 6.304 29 C -0.026 4.026 30 C -0.164 4.164 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.241 0.759 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.074 0.926 48 H 0.109 0.891 49 H 0.099 0.901 50 H 0.093 0.907 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.803 13.388 -13.391 20.481 hybrid contribution -0.280 -0.299 0.571 0.703 sum -8.083 13.089 -12.820 20.025 Atomic orbital electron populations 1.22744 0.80365 1.03169 0.99907 1.87742 1.20198 1.27411 1.95390 1.22484 0.91381 0.85262 1.00983 1.20981 0.94611 0.97313 0.95377 1.20116 0.80715 0.82207 0.86538 1.90639 1.36624 1.68191 1.47040 1.46293 1.49054 1.13657 1.25680 1.22962 0.96228 0.92459 0.86218 0.90338 1.23571 0.96848 0.97161 1.00300 1.23707 0.84890 0.96484 0.90225 0.83047 1.23039 0.97203 0.97598 0.99715 1.22920 0.98919 0.97526 0.97624 1.23171 0.94705 0.89916 0.90201 0.89869 1.46450 1.21411 1.26321 1.36783 1.19060 1.00171 1.07207 1.07202 0.90366 1.24682 0.97912 0.98050 1.00105 1.69446 1.24227 1.20712 1.42825 0.86041 0.79861 0.77718 0.81714 1.21700 1.21709 1.20775 1.22218 0.97323 1.01704 0.96237 1.22651 0.92284 0.84417 1.02704 1.87879 1.74702 1.25479 1.42315 1.22806 0.93328 0.97068 0.89362 1.21947 0.97422 0.93924 1.03063 0.94074 0.89216 0.93984 0.92656 0.92179 0.75889 0.92529 0.91855 0.93690 0.92758 0.93107 0.93187 0.93633 0.89590 0.90281 0.88640 0.92575 0.89126 0.90092 0.90714 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -3.91 7.62 -35.23 -0.27 -4.17 16 3 C 0.08 0.72 4.81 37.16 0.18 0.90 16 4 C -0.08 -0.90 0.53 -155.48 -0.08 -0.99 16 5 C 0.52 7.89 5.14 -10.99 -0.06 7.84 16 6 O -0.55 -10.14 13.57 5.55 0.08 -10.07 16 7 N -0.70 -10.69 3.17 -50.43 -0.16 -10.85 16 8 C 0.13 2.43 3.12 -64.43 -0.20 2.23 16 9 H 0.08 1.69 7.70 -51.93 -0.40 1.29 16 10 C -0.14 -2.69 6.30 -23.22 -0.15 -2.83 16 11 C 0.15 3.48 4.67 -62.80 -0.29 3.19 16 12 H 0.15 3.92 5.52 -51.93 -0.29 3.64 16 13 C -0.14 -2.65 6.44 -24.23 -0.16 -2.81 16 14 C -0.13 -2.43 6.32 -24.24 -0.15 -2.58 16 15 C 0.13 2.74 5.35 -62.80 -0.34 2.40 16 16 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 17 N -0.59 -14.77 2.99 -145.82 -0.44 -15.20 16 18 C -0.21 -5.79 10.59 -15.06 -0.16 -5.95 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.92 -26.27 10.46 55.49 0.58 -25.68 16 22 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C -0.14 -1.44 4.68 -26.50 -0.12 -1.56 16 27 C 0.06 0.68 6.62 37.31 0.25 0.93 16 28 O -0.38 -5.11 10.77 -35.23 -0.38 -5.49 16 29 C 0.05 0.63 6.55 37.20 0.24 0.88 16 30 C -0.13 -1.35 4.56 -26.59 -0.12 -1.47 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.40 5.65 5.41 -40.82 -0.22 5.43 16 37 H 0.06 0.94 7.40 -51.93 -0.38 0.56 16 38 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 39 H 0.04 0.75 7.80 -51.93 -0.40 0.35 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.82 6.48 -51.93 -0.34 0.48 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.09 0.90 7.16 -51.93 -0.37 0.53 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.06 0.80 7.38 -51.93 -0.38 0.41 16 48 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.08 1.23 5.81 -51.93 -0.30 0.93 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -30.86 382.30 -8.54 -39.40 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.55 Total: 8.07 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.14 Total: 1.10 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.02 Total: -51.74 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.57 Total: -19.73 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.86 -8.54 -39.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109380835.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.382 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds