Wall clock time and date at job start Tue Mar 31 2020 21:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99602 * 2 1 4 4 C 1.52999 * 109.47022 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.54373 * 300.00011 * 4 3 2 6 6 O 1.21284 * 119.99936 * 239.99796 * 5 4 3 7 7 N 1.34773 * 120.00047 * 59.99899 * 5 4 3 8 8 C 1.46497 * 119.99946 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.68367 * 36.75784 * 8 7 5 10 10 C 1.56688 * 110.35337 * 159.70733 * 8 7 5 11 11 C 1.55846 * 102.59888 * 118.78327 * 10 8 7 12 12 H 1.09004 * 115.55749 * 159.08667 * 11 10 8 13 13 C 1.55846 * 105.06355 * 287.69592 * 11 10 8 14 14 C 1.54852 * 103.44011 * 72.57917 * 13 11 10 15 15 C 1.55839 * 110.62807 * 273.76288 * 8 7 5 16 16 H 1.08998 * 116.12827 * 82.36700 * 15 8 7 17 17 N 1.50240 * 101.75329 * 32.69393 * 11 10 8 18 18 C 1.36930 * 130.83891 * 125.87265 * 17 11 10 19 19 H 1.07998 * 120.00215 * 179.97438 * 18 17 11 20 20 C 1.38810 * 120.00097 * 359.95866 * 18 17 11 21 21 N 1.31617 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00069 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47178 * 90.00015 * 22 20 18 24 24 H 1.48503 * 109.46871 * 210.00260 * 22 20 18 25 25 H 1.48502 * 109.46923 * 329.99497 * 22 20 18 26 26 C 1.53170 * 109.54301 * 60.17926 * 4 3 2 27 27 C 1.53286 * 109.06242 * 176.85334 * 26 4 3 28 28 O 1.42898 * 109.45980 * 302.44110 * 27 26 4 29 29 C 1.42902 * 114.09757 * 61.15874 * 28 27 26 30 30 C 1.53089 * 109.41718 * 298.84140 * 29 28 27 31 31 H 1.08998 * 109.47427 * 60.00168 * 1 2 3 32 32 H 1.09009 * 109.46863 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47452 * 299.99481 * 1 2 3 34 34 H 1.09005 * 109.47111 * 60.00133 * 3 2 1 35 35 H 1.08993 * 109.47265 * 300.00146 * 3 2 1 36 36 H 0.97005 * 120.00048 * 0.02562 * 7 5 4 37 37 H 1.08997 * 111.44033 * 0.38690 * 10 8 7 38 38 H 1.09009 * 110.61902 * 236.80444 * 10 8 7 39 39 H 1.08995 * 110.62505 * 314.08969 * 13 11 10 40 40 H 1.08998 * 110.75944 * 191.12946 * 13 11 10 41 41 H 1.09005 * 110.62529 * 241.50600 * 14 13 11 42 42 H 1.08997 * 110.76179 * 118.55817 * 14 13 11 43 43 H 0.97003 * 120.00106 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.52492 * 296.83978 * 26 4 3 45 45 H 1.09001 * 109.52794 * 57.03135 * 26 4 3 46 46 H 1.09003 * 109.45525 * 182.45045 * 27 26 4 47 47 H 1.08994 * 109.46853 * 62.44770 * 27 26 4 48 48 H 1.09000 * 109.48529 * 178.85682 * 29 28 27 49 49 H 1.09002 * 109.49250 * 58.82903 * 29 28 27 50 50 H 1.08998 * 109.52216 * 297.70421 * 30 29 28 51 51 H 1.09001 * 109.57518 * 177.54178 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 3.9824 0.4369 1.2289 6 8 4.7249 0.9697 2.0263 7 7 3.5571 -0.8240 1.4425 8 6 3.9921 -1.5512 2.6376 9 1 4.0619 -0.8793 3.4930 10 6 3.0130 -2.7362 2.9410 11 6 3.9428 -3.9821 2.8310 12 1 3.5875 -4.8801 3.3365 13 6 4.2325 -4.1380 1.3076 14 6 5.1958 -2.9646 1.0025 15 6 5.3567 -2.2594 2.3829 16 1 6.2469 -1.6402 2.4938 17 7 5.2525 -3.4305 3.3183 18 6 6.0928 -3.8624 4.3094 19 1 7.0060 -3.3241 4.5159 20 6 5.7708 -4.9921 5.0490 21 7 4.6575 -5.6477 4.7980 22 14 6.9176 -5.5818 6.4007 23 1 6.5414 -4.9379 7.6848 24 1 6.8069 -7.0566 6.5352 25 1 8.3160 -5.2198 6.0562 26 6 3.9890 0.4290 -1.2533 27 6 5.5209 0.3830 -1.2830 28 8 6.0378 1.7149 -1.2542 29 6 5.6834 2.4531 -0.0830 30 6 4.1601 2.5835 -0.0051 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.6885 1.8465 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 2.9635 -1.2503 0.8046 37 1 2.2113 -2.7892 2.2044 38 1 2.6052 -2.6490 3.9481 39 1 3.3134 -4.0405 0.7300 40 1 4.7144 -5.0938 1.1019 41 1 4.7543 -2.2851 0.2734 42 1 6.1567 -3.3360 0.6466 43 1 4.4327 -6.4374 5.3146 44 1 3.5924 -0.5860 -1.2299 45 1 3.6231 0.9436 -2.1418 46 1 5.8515 -0.1155 -2.1941 47 1 5.8846 -0.1669 -0.4151 48 1 6.1312 3.4458 -0.1296 49 1 6.0492 1.9305 0.8009 50 1 3.7976 3.1415 -0.8684 51 1 3.8848 3.1083 0.9097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109380835.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:09 Heat of formation + Delta-G solvation = -99.477793 kcal Electronic energy + Delta-G solvation = -32760.377750 eV Core-core repulsion = 28660.413289 eV Total energy + Delta-G solvation = -4099.964461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.12062 -40.68277 -38.86363 -38.64655 -35.44137 -35.13841 -34.14139 -32.03649 -31.00962 -30.63048 -29.44278 -28.86568 -26.90225 -26.18640 -24.61812 -24.36338 -23.28963 -22.58280 -21.43075 -20.43739 -20.11550 -18.88736 -17.79470 -17.55366 -17.39749 -16.91697 -16.84378 -16.71819 -16.53777 -16.12318 -15.96191 -15.68942 -15.54313 -15.11041 -14.75868 -14.53276 -14.13136 -13.91560 -13.49252 -13.33164 -13.32360 -13.14118 -13.11094 -12.91502 -12.83359 -12.78628 -12.59590 -12.38288 -12.31144 -12.18038 -12.00369 -11.90742 -11.62167 -11.51468 -11.48695 -11.17335 -11.03055 -10.78366 -10.74164 -10.54348 -10.27449 -9.89161 -8.85548 -7.79896 -5.19347 1.45336 1.46573 1.54796 1.67778 2.23154 2.50309 2.70978 2.97239 3.33311 3.47780 3.57422 3.64878 3.83597 3.87095 4.00848 4.08035 4.14284 4.15467 4.29432 4.38935 4.39980 4.44362 4.47309 4.58613 4.60422 4.63716 4.67322 4.69431 4.70692 4.74552 4.80689 4.82952 4.89396 4.95587 4.99546 5.04457 5.06790 5.11404 5.13774 5.18854 5.29101 5.34841 5.45284 5.57496 5.77942 5.88736 6.18913 6.24662 6.26932 6.74777 7.05169 7.41071 7.68407 8.54961 9.26801 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.003751 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.984143 B = 7462.106056 C = 8267.372942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.079 3.921 4 C -0.074 4.074 5 C 0.516 3.484 6 O -0.585 6.585 7 N -0.685 5.685 8 C 0.147 3.853 9 H 0.047 0.953 10 C -0.123 4.123 11 C 0.140 3.860 12 H 0.120 0.880 13 C -0.124 4.124 14 C -0.114 4.114 15 C 0.121 3.879 16 H 0.061 0.939 17 N -0.616 5.616 18 C -0.226 4.226 19 H 0.069 0.931 20 C -0.061 4.061 21 N -0.943 5.943 22 Si 0.975 3.025 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.130 4.130 27 C 0.051 3.949 28 O -0.394 6.394 29 C 0.048 3.952 30 C -0.122 4.122 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.415 0.585 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.249 0.751 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.025 0.975 48 H 0.107 0.893 49 H 0.045 0.955 50 H 0.106 0.894 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.494 14.511 -16.903 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.325 6.325 3 C 0.002 3.998 4 C -0.077 4.077 5 C 0.303 3.697 6 O -0.465 6.465 7 N -0.338 5.338 8 C 0.039 3.961 9 H 0.065 0.935 10 C -0.163 4.163 11 C 0.034 3.966 12 H 0.138 0.862 13 C -0.164 4.164 14 C -0.153 4.153 15 C 0.013 3.987 16 H 0.079 0.921 17 N -0.338 5.338 18 C -0.355 4.355 19 H 0.087 0.913 20 C -0.254 4.254 21 N -0.592 5.592 22 Si 0.804 3.196 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.167 4.167 27 C -0.026 4.026 28 O -0.313 6.313 29 C -0.028 4.028 30 C -0.160 4.160 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.255 0.745 37 H 0.112 0.888 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.124 0.876 46 H 0.133 0.867 47 H 0.044 0.956 48 H 0.125 0.875 49 H 0.063 0.937 50 H 0.124 0.876 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.668 14.569 -16.250 23.870 hybrid contribution 0.328 -0.596 1.452 1.604 sum -9.340 13.973 -14.797 22.393 Atomic orbital electron populations 1.22891 0.78990 1.03921 1.00772 1.87685 1.21654 1.27630 1.95572 1.22488 0.89477 0.85506 1.02335 1.21008 0.96353 0.96978 0.93349 1.20945 0.79564 0.81822 0.87384 1.90640 1.38148 1.68923 1.48817 1.46082 1.49275 1.13805 1.24607 1.22391 0.95035 0.91853 0.86812 0.93482 1.23404 0.97008 0.95366 1.00480 1.23628 0.84598 0.96503 0.91910 0.86232 1.22929 0.98824 0.96913 0.97698 1.22793 0.98759 0.97372 0.96412 1.23270 0.95085 0.89259 0.91126 0.92071 1.46692 1.22182 1.27867 1.37081 1.19284 1.00538 1.07435 1.08247 0.91303 1.25388 0.99463 0.98348 1.02177 1.69669 1.25297 1.20773 1.43474 0.85121 0.78386 0.76958 0.79113 1.21647 1.21589 1.20230 1.22219 0.95713 1.02270 0.96534 1.22766 0.93744 0.83774 1.02288 1.87866 1.75300 1.25937 1.42226 1.22801 0.94953 0.97261 0.87819 1.21950 0.95880 0.93885 1.04242 0.92170 0.88608 0.94172 0.93114 0.89007 0.74494 0.88794 0.93730 0.89740 0.94480 0.89895 0.94008 0.94109 0.89024 0.87553 0.86724 0.95615 0.87477 0.93714 0.87573 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.41 -6.55 7.62 -148.98 -1.13 -7.68 16 3 C 0.08 1.19 4.81 71.98 0.35 1.54 16 4 C -0.07 -1.47 0.53 -52.81 -0.03 -1.50 16 5 C 0.52 15.22 5.14 87.66 0.45 15.67 16 6 O -0.58 -22.27 13.57 -3.04 -0.04 -22.31 16 7 N -0.68 -20.10 3.17 -431.87 -1.37 -21.47 16 8 C 0.15 5.64 3.12 47.26 0.15 5.78 16 9 H 0.05 2.11 7.70 -2.39 -0.02 2.10 16 10 C -0.12 -4.69 6.30 32.87 0.21 -4.49 16 11 C 0.14 6.39 4.67 46.23 0.22 6.60 16 12 H 0.12 6.37 5.52 -2.39 -0.01 6.35 16 13 C -0.12 -4.68 6.44 32.21 0.21 -4.47 16 14 C -0.11 -4.14 6.32 32.21 0.20 -3.94 16 15 C 0.12 5.26 5.35 46.22 0.25 5.50 16 16 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 17 N -0.62 -31.98 2.99 -615.25 -1.84 -33.82 16 18 C -0.23 -13.07 10.59 84.03 0.89 -12.18 16 19 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 21 N -0.94 -55.20 10.46 21.65 0.23 -54.97 16 22 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 26 C -0.13 -2.23 4.68 30.75 0.14 -2.09 16 27 C 0.05 1.13 6.62 72.08 0.48 1.60 16 28 O -0.39 -9.81 10.77 -148.98 -1.60 -11.42 16 29 C 0.05 1.15 6.55 72.01 0.47 1.62 16 30 C -0.12 -2.31 4.56 30.69 0.14 -2.17 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.41 10.32 5.41 -92.70 -0.50 9.82 16 37 H 0.09 2.86 7.40 -2.39 -0.02 2.84 16 38 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.08 2.51 7.80 -2.39 -0.02 2.49 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 2.46 6.48 -2.38 -0.02 2.45 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.09 1.51 7.16 -2.39 -0.02 1.49 16 45 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.03 0.72 7.38 -2.39 -0.02 0.70 16 48 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.04 1.41 5.81 -2.39 -0.01 1.39 16 50 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.08 1.55 8.03 -2.39 -0.02 1.53 16 Total: -1.00 -71.05 382.30 2.52 -68.53 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.42 Total: 28.28 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.83 Total: 6.05 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -2.98 Total: -110.26 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -2.78 Total: -41.40 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -71.05 2.52 -68.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109380835.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.948 kcal (2) G-P(sol) polarization free energy of solvation -71.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds