Wall clock time and date at job start Tue Mar 31 2020 22:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00129 * 2 1 4 4 H 1.48505 * 109.47308 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47068 * 299.99857 * 3 2 1 6 6 H 1.48506 * 109.46828 * 59.99708 * 3 2 1 7 7 C 1.38815 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00254 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99606 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99729 * 174.07047 * 9 7 2 11 11 C 1.53002 * 109.46936 * 300.07751 * 10 9 7 12 12 N 1.46498 * 109.47353 * 305.24740 * 11 10 9 13 13 C 1.34775 * 120.00151 * 175.98649 * 12 11 10 14 14 O 1.21284 * 119.99950 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00066 * 180.02562 * 13 12 11 16 16 N 1.46501 * 109.47352 * 179.97438 * 15 13 12 17 17 C 1.46380 * 119.32988 * 89.99162 * 16 15 13 18 18 C 1.53242 * 109.15304 * 150.91977 * 17 16 15 19 19 C 1.53246 * 108.55989 * 55.48191 * 18 17 16 20 20 N 1.46378 * 109.15387 * 304.52151 * 19 18 17 21 21 C 1.34137 * 121.34270 * 29.31403 * 20 19 18 22 22 O 1.21582 * 118.69604 * 179.14920 * 21 20 19 23 23 C 1.52994 * 109.47151 * 60.07697 * 10 9 7 24 24 C 1.53002 * 109.47157 * 60.00188 * 23 10 9 25 25 C 1.52997 * 109.47352 * 59.99703 * 24 23 10 26 26 C 1.53005 * 109.47242 * 300.00596 * 25 24 23 27 27 C 1.53001 * 109.46991 * 180.08248 * 10 9 7 28 28 H 0.97000 * 120.00079 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00353 * 354.07681 * 9 7 2 30 30 H 1.09004 * 109.46742 * 185.24909 * 11 10 9 31 31 H 1.09002 * 109.47390 * 65.25183 * 11 10 9 32 32 H 0.97001 * 119.99903 * 355.98392 * 12 11 10 33 33 H 1.08997 * 109.47654 * 59.99616 * 15 13 12 34 34 H 1.09001 * 109.46623 * 299.99258 * 15 13 12 35 35 H 1.08998 * 109.52607 * 31.02267 * 17 16 15 36 36 H 1.09000 * 109.58236 * 270.85831 * 17 16 15 37 37 H 1.08998 * 109.62160 * 295.76430 * 18 17 16 38 38 H 1.09002 * 109.77778 * 175.29202 * 18 17 16 39 39 H 1.09000 * 109.52190 * 184.61535 * 19 18 17 40 40 H 1.08998 * 109.57925 * 64.45546 * 19 18 17 41 41 H 0.96998 * 119.32740 * 209.03610 * 20 19 18 42 42 H 1.09000 * 109.47093 * 179.97438 * 23 10 9 43 43 H 1.09000 * 109.47245 * 299.99973 * 23 10 9 44 44 H 1.09000 * 109.46863 * 299.99828 * 24 23 10 45 45 H 1.09000 * 109.47100 * 180.02562 * 24 23 10 46 46 H 1.08995 * 109.47577 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47035 * 60.00229 * 25 24 23 48 48 H 1.09000 * 109.46806 * 299.99773 * 26 25 24 49 49 H 1.09000 * 109.47255 * 179.97438 * 26 25 24 50 50 H 1.08994 * 109.47340 * 59.99511 * 27 10 9 51 51 H 1.09000 * 109.47122 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0523 -3.6534 -0.1300 11 6 2.8185 -3.6672 -1.4543 12 7 1.8914 -3.4042 -2.5577 13 6 2.3579 -3.2882 -3.8167 14 8 3.5454 -3.4010 -4.0362 15 6 1.4043 -3.0171 -4.9517 16 7 2.1520 -2.9347 -6.2088 17 6 2.3665 -4.1498 -6.9964 18 6 2.4775 -3.7753 -8.4783 19 6 3.5895 -2.7327 -8.6360 20 7 3.3086 -1.5947 -7.7593 21 6 2.6303 -1.7482 -6.6123 22 8 2.4376 -0.7725 -5.9129 23 6 3.0381 -3.7975 1.0311 24 6 2.2719 -3.7837 2.3554 25 6 1.2788 -4.9472 2.3822 26 6 0.2929 -4.8032 1.2210 27 6 1.0591 -4.8170 -0.1033 28 1 -0.4850 0.8400 -0.0004 29 1 0.3594 -2.3903 0.0868 30 1 3.2832 -4.6432 -1.5949 31 1 3.5895 -2.8969 -1.4360 32 1 0.9417 -3.3137 -2.3820 33 1 0.8872 -2.0741 -4.7745 34 1 0.6753 -3.8250 -5.0145 35 1 1.5260 -4.8291 -6.8544 36 1 3.2869 -4.6366 -6.6738 37 1 1.5316 -3.3564 -8.8217 38 1 2.7203 -4.6611 -9.0653 39 1 3.6273 -2.3944 -9.6714 40 1 4.5470 -3.1757 -8.3623 41 1 3.6229 -0.7122 -8.0110 42 1 3.5785 -4.7391 0.9343 43 1 3.7456 -2.9685 1.0120 44 1 1.7312 -2.8422 2.4525 45 1 2.9743 -3.8858 3.1826 46 1 0.7326 -4.9371 3.3254 47 1 1.8194 -5.8886 2.2851 48 1 -0.2477 -3.8617 1.3181 49 1 -0.4143 -5.6323 1.2398 50 1 0.3568 -4.7143 -0.9304 51 1 1.5998 -5.7585 -0.1999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115614948.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:18 Heat of formation + Delta-G solvation = -84.724515 kcal Electronic energy + Delta-G solvation = -31360.299378 eV Core-core repulsion = 27293.267419 eV Total energy + Delta-G solvation = -4067.031960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.83619 -40.74949 -39.65179 -37.50842 -36.00724 -35.69882 -35.03931 -32.87042 -32.03032 -31.54679 -30.48477 -29.21766 -26.75883 -26.01092 -25.69768 -23.95960 -23.42469 -21.92529 -21.42735 -20.02636 -19.74142 -19.04812 -18.59923 -18.27583 -18.26377 -17.02123 -16.66812 -16.63553 -16.19923 -15.86430 -15.63776 -15.56627 -15.37765 -15.02978 -14.95166 -14.69108 -14.64119 -14.33852 -14.14531 -13.78138 -13.40917 -13.24936 -13.15300 -12.91721 -12.86969 -12.73608 -12.60715 -12.48003 -12.32672 -12.19595 -12.05860 -11.91466 -11.69413 -11.26132 -11.22900 -11.14314 -11.11609 -10.74785 -10.68151 -10.18231 -9.86720 -9.60289 -8.90392 -7.91325 -5.13361 1.36785 1.43401 1.46547 1.55113 1.71193 2.08970 2.50587 2.57286 2.91573 3.43198 3.79065 3.81812 3.88722 3.93047 3.98792 4.05284 4.07321 4.15170 4.33250 4.40207 4.41423 4.49664 4.50196 4.67278 4.69179 4.76531 4.77876 4.78139 4.82006 4.82808 4.92980 4.97745 5.09221 5.19458 5.21797 5.23489 5.33942 5.47842 5.50831 5.52615 5.56748 5.59336 5.60991 5.72842 5.81012 6.06690 6.33550 6.69692 6.78901 7.35123 7.42955 7.52034 8.16403 8.42001 9.31259 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003717 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.143354 B = 7531.589084 C = 9213.702655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.060 4.060 3 Si 0.937 3.063 4 H -0.282 1.282 5 H -0.307 1.307 6 H -0.290 1.290 7 C -0.202 4.202 8 H 0.055 0.945 9 N -0.708 5.708 10 C 0.189 3.811 11 C 0.126 3.874 12 N -0.694 5.694 13 C 0.489 3.511 14 O -0.590 6.590 15 C 0.116 3.884 16 N -0.604 5.604 17 C 0.104 3.896 18 C -0.142 4.142 19 C 0.101 3.899 20 N -0.734 5.734 21 C 0.698 3.302 22 O -0.654 6.654 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.107 4.107 26 C -0.113 4.113 27 C -0.106 4.106 28 H 0.246 0.754 29 H 0.379 0.621 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.407 0.593 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.415 0.585 42 H 0.074 0.926 43 H 0.031 0.969 44 H 0.040 0.960 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.042 0.958 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -18.180 -14.360 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.252 4.252 3 Si 0.770 3.230 4 H -0.208 1.208 5 H -0.235 1.235 6 H -0.217 1.217 7 C -0.335 4.335 8 H 0.073 0.927 9 N -0.348 5.348 10 C 0.098 3.902 11 C -0.001 4.001 12 N -0.344 5.344 13 C 0.275 3.725 14 O -0.471 6.471 15 C -0.012 4.012 16 N -0.339 5.339 17 C -0.018 4.018 18 C -0.180 4.180 19 C -0.021 4.021 20 N -0.390 5.390 21 C 0.399 3.601 22 O -0.537 6.537 23 C -0.156 4.156 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.151 4.151 27 C -0.144 4.144 28 H 0.055 0.945 29 H 0.213 0.787 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.243 0.757 33 H 0.111 0.889 34 H 0.173 0.827 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.152 0.848 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.252 0.748 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.061 0.939 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.707 -17.858 -14.141 22.843 hybrid contribution 0.268 2.422 0.335 2.459 sum 1.975 -15.436 -13.806 20.803 Atomic orbital electron populations 1.69713 1.05446 1.25063 1.60471 1.25044 0.95985 0.99215 1.05001 0.85609 0.78210 0.82938 0.76284 1.20771 1.23527 1.21697 1.19144 0.90420 0.85250 1.38683 0.92699 1.42451 1.05833 0.99873 1.86686 1.20069 0.92325 0.86979 0.90781 1.21680 0.92098 0.98541 0.87762 1.45685 1.11911 1.70925 1.05860 1.21703 0.89828 0.75710 0.85260 1.90602 1.18604 1.52814 1.85062 1.21267 0.92826 1.05936 0.81137 1.46431 1.57520 1.07487 1.22487 1.21944 1.03259 0.85474 0.91101 1.22231 0.99637 1.01238 0.94874 1.21872 0.98595 0.86453 0.95230 1.44960 1.59252 1.13579 1.21241 1.15832 0.78926 0.83429 0.81925 1.90970 1.65779 1.40016 1.56944 1.21810 0.97712 1.00293 0.95784 1.21313 0.98043 0.98946 0.96131 1.21451 0.96853 0.97990 0.98151 1.21452 0.97877 1.01367 0.94371 1.21664 0.97602 0.97035 0.98077 0.94470 0.78728 0.91420 0.96238 0.75686 0.88888 0.82667 0.86985 0.92478 0.90180 0.84766 0.86654 0.91717 0.74784 0.90726 0.95009 0.94157 0.92423 0.92080 0.90615 0.93918 0.90302 0.91630 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.39 13.07 21.65 0.28 -57.10 16 2 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 3 Si 0.94 49.75 29.55 68.60 2.03 51.77 16 4 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 5 H -0.31 -16.97 7.11 99.48 0.71 -16.26 16 6 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 7 C -0.20 -11.01 8.72 84.03 0.73 -10.27 16 8 H 0.06 3.11 6.75 -2.91 -0.02 3.09 16 9 N -0.71 -32.02 3.55 -303.34 -1.08 -33.09 16 10 C 0.19 6.67 0.40 3.60 0.00 6.67 16 11 C 0.13 4.74 4.32 86.38 0.37 5.11 16 12 N -0.69 -24.91 5.14 -463.05 -2.38 -27.29 16 13 C 0.49 18.29 7.89 87.66 0.69 18.98 16 14 O -0.59 -26.46 16.43 -3.04 -0.05 -26.51 16 15 C 0.12 3.41 5.83 85.63 0.50 3.91 16 16 N -0.60 -17.01 2.30 -845.67 -1.95 -18.96 16 17 C 0.10 1.75 6.55 86.48 0.57 2.31 16 18 C -0.14 -1.44 6.20 30.76 0.19 -1.25 16 19 C 0.10 1.34 7.20 86.48 0.62 1.96 16 20 N -0.73 -17.74 5.58 -479.85 -2.68 -20.42 16 21 C 0.70 24.14 8.18 179.45 1.47 25.61 16 22 O -0.65 -30.70 16.50 -3.97 -0.07 -30.77 16 23 C -0.12 -3.96 4.56 30.59 0.14 -3.82 16 24 C -0.11 -3.45 5.77 30.59 0.18 -3.27 16 25 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 26 C -0.11 -3.01 5.75 30.60 0.18 -2.83 16 27 C -0.11 -2.85 4.65 30.60 0.14 -2.71 16 28 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.38 18.23 6.53 -92.71 -0.61 17.62 16 30 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 32 H 0.41 13.71 7.27 -92.71 -0.67 13.03 16 33 H 0.09 3.26 7.32 -2.39 -0.02 3.24 16 34 H 0.16 2.79 7.86 -2.39 -0.02 2.77 16 35 H 0.11 1.19 7.87 -2.39 -0.02 1.17 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.41 9.37 8.88 -92.71 -0.82 8.54 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 43 H 0.03 1.26 7.16 -2.39 -0.02 1.24 16 44 H 0.04 1.63 7.60 -2.39 -0.02 1.61 16 45 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 49 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.07 1.69 7.11 -2.39 -0.02 1.67 16 51 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -84.92 395.72 -0.61 -85.53 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: -1.15 Total: 42.00 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 6.43 Total: 34.85 kcal Atomic # 7 Polarization: -149.07 SS G_CDS: -7.80 Total: -156.88 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -0.12 Total: -57.28 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.03 Total: 51.77 kcal Total: -84.92 -0.61 -85.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115614948.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.808 kcal (2) G-P(sol) polarization free energy of solvation -84.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds