Wall clock time and date at job start Tue Mar 31 2020 21:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37093 * 120.00408 * 2 1 4 4 H 1.08000 * 120.00143 * 202.79106 * 3 2 1 5 5 C 1.38952 * 120.00118 * 22.78503 * 3 2 1 6 6 N 1.31412 * 119.99603 * 14.05980 * 5 3 2 7 7 Si 1.86797 * 120.00260 * 194.06115 * 5 3 2 8 8 H 1.48497 * 109.47205 * 59.99865 * 7 5 3 9 9 H 1.48499 * 109.47223 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47081 * 299.99943 * 7 5 3 11 11 C 1.34777 * 120.00061 * 179.97438 * 2 1 3 12 12 O 1.21288 * 120.00404 * 180.02562 * 11 2 1 13 13 C 1.50706 * 119.99727 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.47136 * 175.81236 * 13 11 2 15 15 C 1.53005 * 110.01831 * 299.01570 * 14 13 11 16 16 C 1.50696 * 109.47019 * 296.02650 * 15 14 13 17 17 O 1.21278 * 120.00161 * 354.70605 * 16 15 14 18 18 N 1.34777 * 119.99787 * 174.70517 * 16 15 14 19 19 C 1.47151 * 120.98238 * 359.71837 * 18 16 15 20 20 C 1.53711 * 108.16099 * 129.43349 * 19 18 16 21 21 O 1.42963 * 109.14590 * 52.53670 * 20 19 18 22 22 C 1.42956 * 114.16763 * 297.28460 * 21 20 19 23 23 C 1.47154 * 120.97912 * 180.02562 * 18 16 15 24 24 C 1.54266 * 110.03091 * 60.40399 * 14 13 11 25 25 C 1.54971 * 104.15828 * 95.75731 * 24 14 13 26 26 C 1.54883 * 102.77676 * 37.88562 * 25 24 14 27 27 C 1.53872 * 110.03510 * 177.62308 * 14 13 11 28 28 H 1.08996 * 109.47809 * 270.48467 * 1 2 3 29 29 H 1.09002 * 109.46697 * 30.48622 * 1 2 3 30 30 H 1.09000 * 109.46968 * 150.47692 * 1 2 3 31 31 H 0.97001 * 119.99528 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46827 * 55.81609 * 13 11 2 33 33 H 1.08994 * 109.47523 * 295.81407 * 13 11 2 34 34 H 1.08999 * 109.47048 * 56.03057 * 15 14 13 35 35 H 1.08999 * 109.46731 * 176.02429 * 15 14 13 36 36 H 1.09004 * 109.68055 * 249.21109 * 19 18 16 37 37 H 1.09004 * 109.68082 * 9.76334 * 19 18 16 38 38 H 1.09004 * 109.65477 * 292.57009 * 20 19 18 39 39 H 1.08998 * 109.48323 * 172.39841 * 20 19 18 40 40 H 1.09002 * 109.51962 * 302.66137 * 22 21 20 41 41 H 1.09002 * 109.55426 * 182.53130 * 22 21 20 42 42 H 1.09001 * 109.68372 * 350.23021 * 23 18 16 43 43 H 1.08997 * 109.68636 * 110.75084 * 23 18 16 44 44 H 1.09000 * 110.49008 * 214.39935 * 24 14 13 45 45 H 1.08996 * 110.49210 * 337.05032 * 24 14 13 46 46 H 1.09009 * 110.71598 * 279.57380 * 25 24 14 47 47 H 1.09003 * 110.92324 * 156.29914 * 25 24 14 48 48 H 1.09000 * 110.48507 * 203.40501 * 26 25 24 49 49 H 1.08997 * 110.48717 * 80.76603 * 26 25 24 50 50 H 1.09008 * 110.02952 * 359.95221 * 27 14 13 51 51 H 1.08995 * 110.03497 * 121.38017 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1673 1.2237 -0.3623 5 6 1.5372 2.3437 0.4660 6 7 0.4211 2.2635 1.1551 7 14 2.2991 4.0123 0.1131 8 1 2.3831 4.2175 -1.3552 9 1 1.4574 5.0779 0.7140 10 1 3.6624 4.0680 0.6994 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3762 -3.6334 -0.1042 15 6 3.1659 -3.5318 -1.4107 16 6 2.2259 -3.6833 -2.5788 17 8 1.0587 -3.9510 -2.3872 18 7 2.6825 -3.5214 -3.8365 19 6 4.0930 -3.1903 -4.0936 20 6 4.6335 -4.1769 -5.1411 21 8 3.7649 -4.1778 -6.2766 22 6 2.4356 -4.6227 -5.9963 23 6 1.7836 -3.6639 -4.9929 24 6 3.3411 -3.6146 1.0993 25 6 2.7071 -4.6046 2.1090 26 6 2.1591 -5.7256 1.1915 27 6 1.6246 -4.9748 -0.0455 28 1 -0.3634 0.0087 1.0275 29 1 -0.3633 0.8856 -0.5214 30 1 -0.3633 -0.8942 -0.5064 31 1 -0.0069 3.0708 1.4807 32 1 0.7039 -2.4984 -0.8499 33 1 0.8157 -2.5631 0.9254 34 1 3.6575 -2.5604 -1.4635 35 1 3.9167 -4.3212 -1.4437 36 1 4.1677 -2.1709 -4.4724 37 1 4.6658 -3.2824 -3.1708 38 1 4.6752 -5.1789 -4.7138 39 1 5.6334 -3.8700 -5.4477 40 1 2.4692 -5.6262 -5.5721 41 1 1.8535 -4.6362 -6.9177 42 1 0.8263 -4.0698 -4.6659 43 1 1.6295 -2.6913 -5.4602 44 1 4.3314 -3.9577 0.7997 45 1 3.3966 -2.6142 1.5283 46 1 1.8975 -4.1267 2.6609 47 1 3.4591 -4.9981 2.7929 48 1 1.3526 -6.2650 1.6883 49 1 2.9581 -6.4100 0.9066 50 1 0.5539 -4.7986 0.0584 51 1 1.8223 -5.5533 -0.9478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115939308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:24 Heat of formation + Delta-G solvation = -109.379263 kcal Electronic energy + Delta-G solvation = -32070.769726 eV Core-core repulsion = 27970.375905 eV Total energy + Delta-G solvation = -4100.393821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.65429 -39.37871 -38.06146 -37.14177 -34.74816 -34.57619 -32.15534 -31.64993 -31.22998 -28.80580 -28.25831 -27.43748 -26.13686 -25.14900 -24.12095 -23.72907 -22.14955 -20.54648 -19.55871 -19.03890 -17.76931 -17.13938 -16.79644 -16.52177 -15.90665 -15.82157 -15.67638 -15.35708 -15.16279 -14.86182 -14.64979 -14.31683 -14.10570 -13.94706 -13.53190 -13.33345 -12.89858 -12.74217 -12.52426 -12.37092 -12.00611 -11.85149 -11.61417 -11.52242 -11.32669 -11.24018 -11.05780 -10.93658 -10.86105 -10.75051 -10.55230 -10.46409 -10.38381 -10.36613 -10.30662 -10.18340 -9.99454 -9.92611 -9.34059 -8.95525 -8.57376 -8.13228 -7.59277 -6.27287 -3.82516 2.82042 2.91482 3.19959 3.25566 3.29044 3.58784 3.98940 4.17371 4.52798 4.59621 4.80329 4.83638 4.89221 5.00173 5.01065 5.05031 5.11463 5.18286 5.22903 5.30451 5.38764 5.47024 5.52989 5.63763 5.66277 5.77682 5.84156 5.86716 5.90722 6.00688 6.01249 6.10468 6.20019 6.29390 6.34881 6.36398 6.43145 6.48095 6.53910 6.69232 6.71933 6.84154 6.85101 6.93447 7.02605 7.26355 7.40888 7.60021 8.19339 8.33376 8.54383 9.24448 9.50419 10.07207 10.76965 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.004248 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.049225 B = 6589.224616 C = 8374.356022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.447 5.447 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.923 3.077 8 H -0.275 1.275 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.448 3.552 12 O -0.590 6.590 13 C -0.125 4.125 14 C -0.017 4.017 15 C -0.137 4.137 16 C 0.521 3.479 17 O -0.534 6.534 18 N -0.623 5.623 19 C 0.072 3.928 20 C 0.048 3.952 21 O -0.382 6.382 22 C 0.050 3.950 23 C 0.076 3.924 24 C -0.107 4.107 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.101 4.101 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.267 0.733 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -14.771 -8.597 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.165 5.165 3 C -0.434 4.434 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.521 5.521 7 Si 0.750 3.250 8 H -0.201 1.201 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.237 3.763 12 O -0.476 6.476 13 C -0.165 4.165 14 C -0.018 4.018 15 C -0.176 4.176 16 C 0.312 3.688 17 O -0.411 6.411 18 N -0.359 5.359 19 C -0.051 4.051 20 C -0.029 4.029 21 O -0.300 6.300 22 C -0.028 4.028 23 C -0.047 4.047 24 C -0.145 4.145 25 C -0.166 4.166 26 C -0.165 4.165 27 C -0.139 4.139 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.084 0.916 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.436 -14.687 -8.571 17.348 hybrid contribution -0.001 0.990 0.119 0.997 sum 3.435 -13.696 -8.452 16.457 Atomic orbital electron populations 1.21464 0.81389 0.99018 1.01296 1.43613 1.05410 1.04944 1.62524 1.19559 0.99609 0.84053 1.40214 0.88574 1.25311 0.96627 0.99962 0.95372 1.70005 1.19034 1.29335 1.33736 0.86052 0.78984 0.81266 0.78685 1.20066 1.21011 1.19847 1.20167 0.88109 0.84946 0.83117 1.90399 1.13924 1.87077 1.56228 1.21765 0.98615 0.92868 1.03245 1.20544 0.94238 0.93981 0.93064 1.22088 0.97934 1.05808 0.91765 1.21073 0.89371 0.74910 0.83471 1.90631 1.18202 1.47783 1.84442 1.48184 1.10015 1.71661 1.05992 1.22529 0.82098 0.99794 1.00686 1.23073 0.94154 0.98659 0.87041 1.87951 1.21371 1.87498 1.33161 1.22985 0.83757 0.96565 0.99467 1.22230 0.95125 1.00594 0.86732 1.22502 0.97014 1.00702 0.94252 1.22562 0.99911 0.96526 0.97569 1.22422 0.99718 0.97578 0.96769 1.22197 1.00080 0.94799 0.96814 0.92657 0.91578 0.95345 0.92315 0.89315 0.90636 0.85945 0.89894 0.90266 0.88244 0.92658 0.87623 0.92784 0.87816 0.88113 0.90883 0.92333 0.89328 0.91801 0.92277 0.92413 0.92418 0.91558 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.63 8.53 59.85 0.51 3.14 16 2 N -0.45 -11.56 3.01 -122.19 -0.37 -11.93 16 3 C -0.31 -8.54 9.27 -14.93 -0.14 -8.68 16 4 H 0.10 2.77 7.43 -52.49 -0.39 2.38 16 5 C 0.03 0.81 5.04 -17.47 -0.09 0.72 16 6 N -0.88 -23.93 10.79 55.50 0.60 -23.33 16 7 Si 0.92 20.92 29.58 -169.99 -5.03 15.89 16 8 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 11 C 0.45 10.62 6.74 -10.98 -0.07 10.55 16 12 O -0.59 -14.79 11.70 5.55 0.06 -14.72 16 13 C -0.12 -2.43 2.96 -27.88 -0.08 -2.51 16 14 C -0.02 -0.29 0.33 -153.39 -0.05 -0.34 16 15 C -0.14 -2.13 2.70 -27.88 -0.08 -2.21 16 16 C 0.52 8.26 6.80 -10.99 -0.07 8.19 16 17 O -0.53 -9.57 11.91 5.56 0.07 -9.50 16 18 N -0.62 -8.36 3.01 -171.99 -0.52 -8.88 16 19 C 0.07 0.80 6.52 -3.32 -0.02 0.78 16 20 C 0.05 0.44 7.00 37.53 0.26 0.70 16 21 O -0.38 -4.17 10.74 -35.23 -0.38 -4.55 16 22 C 0.05 0.48 6.99 37.33 0.26 0.74 16 23 C 0.08 0.90 6.64 -3.51 -0.02 0.87 16 24 C -0.11 -1.76 5.13 -25.03 -0.13 -1.89 16 25 C -0.13 -1.78 6.91 -24.70 -0.17 -1.95 16 26 C -0.13 -1.63 6.83 -25.08 -0.17 -1.80 16 27 C -0.10 -1.50 4.60 -25.62 -0.12 -1.62 16 28 H 0.05 1.34 7.62 -51.93 -0.40 0.94 16 29 H 0.07 1.62 7.04 -51.93 -0.37 1.25 16 30 H 0.03 0.58 6.31 -51.93 -0.33 0.25 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.09 1.79 5.12 -51.93 -0.27 1.53 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.12 2.22 5.33 -51.93 -0.28 1.94 16 35 H 0.08 1.08 7.83 -51.93 -0.41 0.67 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 1.02 6.08 -51.93 -0.32 0.71 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.25 7.08 -51.93 -0.37 0.88 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.89 7.80 -51.93 -0.41 0.48 16 45 H 0.09 1.77 5.92 -51.93 -0.31 1.46 16 46 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 1.04 7.67 -51.92 -0.40 0.64 16 51 H 0.06 0.87 6.60 -51.93 -0.34 0.52 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -31.42 380.75 -8.36 -39.78 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -8.35 Total: 6.81 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.18 Total: 4.70 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.29 Total: -44.14 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.25 Total: -28.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.42 -8.36 -39.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115939308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.602 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds