Wall clock time and date at job start Tue Mar 31 2020 21:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37093 * 120.00408 * 2 1 4 4 H 1.08000 * 120.00143 * 202.79106 * 3 2 1 5 5 C 1.38952 * 120.00118 * 22.78503 * 3 2 1 6 6 N 1.31412 * 119.99603 * 14.05980 * 5 3 2 7 7 Si 1.86797 * 120.00260 * 194.06115 * 5 3 2 8 8 H 1.48497 * 109.47205 * 59.99865 * 7 5 3 9 9 H 1.48499 * 109.47223 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47081 * 299.99943 * 7 5 3 11 11 C 1.34777 * 120.00061 * 179.97438 * 2 1 3 12 12 O 1.21288 * 120.00404 * 180.02562 * 11 2 1 13 13 C 1.50706 * 119.99727 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.47136 * 175.81236 * 13 11 2 15 15 C 1.53005 * 110.01831 * 299.01570 * 14 13 11 16 16 C 1.50696 * 109.47019 * 296.02650 * 15 14 13 17 17 O 1.21278 * 120.00161 * 354.70605 * 16 15 14 18 18 N 1.34777 * 119.99787 * 174.70517 * 16 15 14 19 19 C 1.47151 * 120.98238 * 359.71837 * 18 16 15 20 20 C 1.53711 * 108.16099 * 129.43349 * 19 18 16 21 21 O 1.42963 * 109.14590 * 52.53670 * 20 19 18 22 22 C 1.42956 * 114.16763 * 297.28460 * 21 20 19 23 23 C 1.47154 * 120.97912 * 180.02562 * 18 16 15 24 24 C 1.54266 * 110.03091 * 60.40399 * 14 13 11 25 25 C 1.54971 * 104.15828 * 95.75731 * 24 14 13 26 26 C 1.54883 * 102.77676 * 37.88562 * 25 24 14 27 27 C 1.53872 * 110.03510 * 177.62308 * 14 13 11 28 28 H 1.08996 * 109.47809 * 270.48467 * 1 2 3 29 29 H 1.09002 * 109.46697 * 30.48622 * 1 2 3 30 30 H 1.09000 * 109.46968 * 150.47692 * 1 2 3 31 31 H 0.97001 * 119.99528 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46827 * 55.81609 * 13 11 2 33 33 H 1.08994 * 109.47523 * 295.81407 * 13 11 2 34 34 H 1.08999 * 109.47048 * 56.03057 * 15 14 13 35 35 H 1.08999 * 109.46731 * 176.02429 * 15 14 13 36 36 H 1.09004 * 109.68055 * 249.21109 * 19 18 16 37 37 H 1.09004 * 109.68082 * 9.76334 * 19 18 16 38 38 H 1.09004 * 109.65477 * 292.57009 * 20 19 18 39 39 H 1.08998 * 109.48323 * 172.39841 * 20 19 18 40 40 H 1.09002 * 109.51962 * 302.66137 * 22 21 20 41 41 H 1.09002 * 109.55426 * 182.53130 * 22 21 20 42 42 H 1.09001 * 109.68372 * 350.23021 * 23 18 16 43 43 H 1.08997 * 109.68636 * 110.75084 * 23 18 16 44 44 H 1.09000 * 110.49008 * 214.39935 * 24 14 13 45 45 H 1.08996 * 110.49210 * 337.05032 * 24 14 13 46 46 H 1.09009 * 110.71598 * 279.57380 * 25 24 14 47 47 H 1.09003 * 110.92324 * 156.29914 * 25 24 14 48 48 H 1.09000 * 110.48507 * 203.40501 * 26 25 24 49 49 H 1.08997 * 110.48717 * 80.76603 * 26 25 24 50 50 H 1.09008 * 110.02952 * 359.95221 * 27 14 13 51 51 H 1.08995 * 110.03497 * 121.38017 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1673 1.2237 -0.3623 5 6 1.5372 2.3437 0.4660 6 7 0.4211 2.2635 1.1551 7 14 2.2991 4.0123 0.1131 8 1 2.3831 4.2175 -1.3552 9 1 1.4574 5.0779 0.7140 10 1 3.6624 4.0680 0.6994 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3762 -3.6334 -0.1042 15 6 3.1659 -3.5318 -1.4107 16 6 2.2259 -3.6833 -2.5788 17 8 1.0587 -3.9510 -2.3872 18 7 2.6825 -3.5214 -3.8365 19 6 4.0930 -3.1903 -4.0936 20 6 4.6335 -4.1769 -5.1411 21 8 3.7649 -4.1778 -6.2766 22 6 2.4356 -4.6227 -5.9963 23 6 1.7836 -3.6639 -4.9929 24 6 3.3411 -3.6146 1.0993 25 6 2.7071 -4.6046 2.1090 26 6 2.1591 -5.7256 1.1915 27 6 1.6246 -4.9748 -0.0455 28 1 -0.3634 0.0087 1.0275 29 1 -0.3633 0.8856 -0.5214 30 1 -0.3633 -0.8942 -0.5064 31 1 -0.0069 3.0708 1.4807 32 1 0.7039 -2.4984 -0.8499 33 1 0.8157 -2.5631 0.9254 34 1 3.6575 -2.5604 -1.4635 35 1 3.9167 -4.3212 -1.4437 36 1 4.1677 -2.1709 -4.4724 37 1 4.6658 -3.2824 -3.1708 38 1 4.6752 -5.1789 -4.7138 39 1 5.6334 -3.8700 -5.4477 40 1 2.4692 -5.6262 -5.5721 41 1 1.8535 -4.6362 -6.9177 42 1 0.8263 -4.0698 -4.6659 43 1 1.6295 -2.6913 -5.4602 44 1 4.3314 -3.9577 0.7997 45 1 3.3966 -2.6142 1.5283 46 1 1.8975 -4.1267 2.6609 47 1 3.4591 -4.9981 2.7929 48 1 1.3526 -6.2650 1.6883 49 1 2.9581 -6.4100 0.9066 50 1 0.5539 -4.7986 0.0584 51 1 1.8223 -5.5533 -0.9478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115939308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:23 Heat of formation + Delta-G solvation = -128.221357 kcal Electronic energy + Delta-G solvation = -32071.586780 eV Core-core repulsion = 27970.375905 eV Total energy + Delta-G solvation = -4101.210875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.90852 -40.65154 -39.45438 -38.48168 -36.54589 -35.77679 -33.69084 -33.24330 -32.30278 -30.16357 -29.45203 -28.69487 -27.95834 -26.60531 -25.57977 -24.93227 -23.09756 -21.77288 -21.01566 -20.31049 -19.19532 -18.84952 -18.25648 -17.75027 -17.39989 -16.97193 -16.77417 -16.54333 -16.34779 -16.12868 -15.97025 -15.88539 -15.58037 -15.44144 -14.78199 -14.59303 -14.29198 -14.07061 -13.88480 -13.57315 -13.47157 -13.35382 -13.14063 -12.93480 -12.78585 -12.68949 -12.61155 -12.38209 -12.32199 -12.16615 -11.93945 -11.86099 -11.69112 -11.66418 -11.44458 -11.35373 -11.31392 -11.17840 -10.96641 -10.60200 -10.02675 -9.63374 -9.58967 -8.31678 -5.95321 1.37830 1.39413 1.49923 1.59601 1.88435 2.09264 2.28172 2.85510 3.10758 3.12432 3.49716 3.70125 3.74319 3.76335 3.90299 4.01102 4.07961 4.18511 4.20415 4.26845 4.35525 4.37070 4.46856 4.50572 4.58775 4.63193 4.66670 4.70357 4.73630 4.76811 4.82765 4.86366 4.89698 4.91298 4.95674 5.04054 5.15605 5.21839 5.28364 5.29838 5.34206 5.41452 5.45571 5.51489 5.56914 5.67887 6.08761 6.12516 6.28867 6.50791 7.13402 7.19927 7.51674 8.09250 8.71409 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.004248 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.049225 B = 6589.224616 C = 8374.356022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.470 5.470 3 C -0.339 4.339 4 H 0.076 0.924 5 C -0.006 4.006 6 N -0.901 5.901 7 Si 0.988 3.012 8 H -0.269 1.269 9 H -0.273 1.273 10 H -0.273 1.273 11 C 0.445 3.555 12 O -0.605 6.605 13 C -0.111 4.111 14 C -0.019 4.019 15 C -0.131 4.131 16 C 0.516 3.484 17 O -0.561 6.561 18 N -0.623 5.623 19 C 0.067 3.933 20 C 0.052 3.948 21 O -0.395 6.395 22 C 0.057 3.943 23 C 0.072 3.928 24 C -0.106 4.106 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.093 4.093 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.271 0.729 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.060 0.940 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.054 0.946 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 -16.398 -9.294 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.189 5.189 3 C -0.467 4.467 4 H 0.094 0.906 5 C -0.207 4.207 6 N -0.540 5.540 7 Si 0.811 3.189 8 H -0.194 1.194 9 H -0.198 1.198 10 H -0.199 1.199 11 C 0.236 3.764 12 O -0.492 6.492 13 C -0.151 4.151 14 C -0.020 4.020 15 C -0.170 4.170 16 C 0.306 3.694 17 O -0.440 6.440 18 N -0.358 5.358 19 C -0.056 4.056 20 C -0.025 4.025 21 O -0.314 6.314 22 C -0.020 4.020 23 C -0.051 4.051 24 C -0.143 4.143 25 C -0.162 4.162 26 C -0.155 4.155 27 C -0.131 4.131 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.073 0.927 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.223 -16.326 -9.289 19.252 hybrid contribution -0.206 1.497 0.327 1.546 sum 4.018 -14.828 -8.962 17.786 Atomic orbital electron populations 1.21300 0.80362 0.99403 1.00562 1.43873 1.06227 1.05164 1.63634 1.19567 0.99464 0.85754 1.41959 0.90636 1.26090 0.97059 1.02948 0.94623 1.70088 1.19772 1.30394 1.33765 0.85086 0.78108 0.76968 0.78724 1.19420 1.19766 1.19864 1.20916 0.88232 0.85812 0.81476 1.90380 1.14915 1.87614 1.56281 1.21695 0.98831 0.91671 1.02909 1.20600 0.93913 0.93724 0.93765 1.21982 0.98278 1.05288 0.91456 1.21101 0.89001 0.74962 0.84287 1.90612 1.19021 1.49349 1.84988 1.48292 1.11251 1.70504 1.05735 1.22716 0.80979 1.00115 1.01795 1.23180 0.94688 0.98580 0.86013 1.87941 1.21872 1.87584 1.33955 1.23025 0.83397 0.95878 0.99738 1.22357 0.94947 1.01075 0.86672 1.22413 0.97994 0.99193 0.94740 1.22541 0.99994 0.96238 0.97423 1.22389 1.00718 0.97131 0.95236 1.22088 0.99123 0.93729 0.98130 0.93841 0.93149 0.92841 0.91923 0.89856 0.90464 0.88649 0.86939 0.91162 0.87647 0.91515 0.85329 0.92121 0.85591 0.88936 0.91370 0.91033 0.93499 0.92804 0.90315 0.90858 0.90421 0.92707 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.15 8.53 127.77 1.09 7.24 16 2 N -0.47 -25.18 3.01 -658.90 -1.99 -27.16 16 3 C -0.34 -19.58 9.27 84.04 0.78 -18.80 16 4 H 0.08 4.55 7.43 -2.91 -0.02 4.53 16 5 C -0.01 -0.33 5.04 84.93 0.43 0.10 16 6 N -0.90 -49.60 10.79 21.66 0.23 -49.36 16 7 Si 0.99 43.29 29.58 68.60 2.03 45.32 16 8 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 C 0.45 21.87 6.74 87.66 0.59 22.46 16 12 O -0.60 -31.50 11.70 -3.06 -0.04 -31.53 16 13 C -0.11 -4.41 2.96 29.85 0.09 -4.32 16 14 C -0.02 -0.62 0.33 -51.46 -0.02 -0.64 16 15 C -0.13 -4.01 2.70 29.85 0.08 -3.93 16 16 C 0.52 16.16 6.80 87.66 0.60 16.76 16 17 O -0.56 -20.00 11.91 -3.02 -0.04 -20.04 16 18 N -0.62 -16.37 3.01 -816.45 -2.46 -18.83 16 19 C 0.07 1.41 6.52 86.49 0.56 1.97 16 20 C 0.05 0.84 7.00 72.22 0.51 1.35 16 21 O -0.40 -7.79 10.74 -148.98 -1.60 -9.39 16 22 C 0.06 0.98 6.99 72.10 0.50 1.48 16 23 C 0.07 1.65 6.64 86.37 0.57 2.23 16 24 C -0.11 -3.41 5.13 31.70 0.16 -3.24 16 25 C -0.12 -3.23 6.91 31.91 0.22 -3.01 16 26 C -0.12 -2.65 6.83 31.67 0.22 -2.43 16 27 C -0.09 -2.60 4.60 31.32 0.14 -2.45 16 28 H 0.04 2.16 7.62 -2.39 -0.02 2.14 16 29 H 0.05 2.54 7.04 -2.39 -0.02 2.52 16 30 H 0.05 2.25 6.31 -2.39 -0.02 2.23 16 31 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.08 3.42 5.12 -2.39 -0.01 3.41 16 33 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.10 3.51 5.33 -2.39 -0.01 3.50 16 35 H 0.11 2.71 7.83 -2.39 -0.02 2.69 16 36 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.11 2.07 6.08 -2.38 -0.01 2.06 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 2.28 7.08 -2.39 -0.02 2.26 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 2.08 7.80 -2.39 -0.02 2.06 16 45 H 0.05 1.91 5.92 -2.39 -0.01 1.89 16 46 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.05 1.65 7.67 -2.38 -0.02 1.64 16 51 H 0.06 1.70 6.60 -2.39 -0.02 1.68 16 Total: -1.00 -69.41 380.75 3.59 -65.82 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.92 Total: 30.44 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 6.53 Total: 14.75 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -4.21 Total: -95.36 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: -1.67 Total: -60.96 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -69.41 3.59 -65.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115939308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.406 kcal (2) G-P(sol) polarization free energy of solvation -69.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds