Wall clock time and date at job start Tue Mar 31 2020 21:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00200 * 2 1 4 4 C 1.53002 * 109.47099 * 63.23155 * 3 2 1 5 5 N 1.46502 * 109.47079 * 53.58487 * 4 3 2 6 6 C 1.34778 * 119.99604 * 183.03503 * 5 4 3 7 7 O 1.21342 * 120.00064 * 359.97438 * 6 5 4 8 8 C 1.49449 * 119.99623 * 180.02562 * 6 5 4 9 9 O 1.21358 * 120.00159 * 4.54313 * 8 6 5 10 10 N 1.34778 * 120.00047 * 184.54975 * 8 6 5 11 11 C 1.46501 * 120.00058 * 185.58471 * 10 8 6 12 12 C 1.52997 * 109.46847 * 184.04438 * 11 10 8 13 13 C 1.50701 * 115.55298 * 305.23898 * 12 11 10 14 14 H 1.07990 * 120.00057 * 115.60526 * 13 12 11 15 15 C 1.37882 * 119.99722 * 295.33580 * 13 12 11 16 16 N 1.31516 * 119.99730 * 171.17979 * 15 13 12 17 17 Si 1.86794 * 119.99998 * 351.17966 * 15 13 12 18 18 H 1.48505 * 109.47194 * 92.61940 * 17 15 13 19 19 H 1.48502 * 109.47017 * 212.61479 * 17 15 13 20 20 H 1.48506 * 109.47514 * 332.61840 * 17 15 13 21 21 C 1.53002 * 117.49752 * 90.91436 * 12 11 10 22 22 C 1.53009 * 117.49641 * 159.57200 * 12 11 10 23 23 C 1.52999 * 109.47290 * 183.23457 * 3 2 1 24 24 C 1.52999 * 109.47199 * 59.99286 * 23 3 2 25 25 C 1.53003 * 109.46658 * 60.00513 * 24 23 3 26 26 C 1.53004 * 109.47200 * 299.99793 * 25 24 23 27 27 C 1.52998 * 109.46953 * 60.00165 * 26 25 24 28 28 H 1.09000 * 109.47561 * 185.51904 * 1 2 3 29 29 H 1.08993 * 109.47287 * 305.52442 * 1 2 3 30 30 H 1.09007 * 109.46709 * 65.52584 * 1 2 3 31 31 H 1.09001 * 109.47290 * 293.58030 * 4 3 2 32 32 H 1.09006 * 109.46729 * 173.58196 * 4 3 2 33 33 H 0.97000 * 119.99573 * 3.03290 * 5 4 3 34 34 H 0.96995 * 119.99788 * 5.57843 * 10 8 6 35 35 H 1.09000 * 109.47001 * 64.04189 * 11 10 8 36 36 H 1.09005 * 109.46999 * 304.04532 * 11 10 8 37 37 H 0.96996 * 119.99792 * 179.97438 * 16 15 13 38 38 H 1.09003 * 117.49512 * 215.00401 * 21 12 11 39 39 H 1.09000 * 117.49977 * 0.02562 * 21 12 11 40 40 H 1.08997 * 117.49572 * 359.96953 * 22 12 11 41 41 H 1.08995 * 117.49557 * 144.97380 * 22 12 11 42 42 H 1.09000 * 109.47470 * 179.97438 * 23 3 2 43 43 H 1.09001 * 109.46785 * 299.99990 * 23 3 2 44 44 H 1.09000 * 109.47433 * 300.00664 * 24 23 3 45 45 H 1.09001 * 109.47090 * 180.02562 * 24 23 3 46 46 H 1.09007 * 109.47305 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47075 * 59.99931 * 25 24 23 48 48 H 1.09004 * 109.46854 * 300.00357 * 26 25 24 49 49 H 1.09004 * 109.47045 * 180.02562 * 26 25 24 50 50 H 1.09001 * 109.46896 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.47252 * 59.99905 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6242 2.0356 1.2879 5 7 1.9807 1.2088 2.4436 6 6 1.6766 1.6247 3.6891 7 8 1.1080 2.6840 3.8531 8 6 2.0408 0.7815 4.8681 9 8 2.6824 -0.2365 4.7110 10 7 1.6564 1.1517 6.1057 11 6 2.1155 0.3940 7.2726 12 6 1.4597 0.9558 8.5355 13 6 1.6487 2.4333 8.7640 14 1 0.7956 3.0953 8.7504 15 6 2.9103 2.9392 8.9958 16 7 3.1024 4.2400 9.0224 17 14 4.3463 1.7770 9.2719 18 1 5.0226 1.5094 7.9772 19 1 5.3109 2.3975 10.2152 20 1 3.8472 0.5002 9.8429 21 6 0.1320 0.3368 8.9772 22 6 1.4108 0.0509 9.7684 23 6 3.5334 1.1855 -0.0814 24 6 3.9194 0.4552 -1.3692 25 6 3.4047 1.2427 -2.5758 26 6 1.8815 1.3627 -2.4945 27 6 1.4955 2.0929 -1.2066 28 1 -0.3634 -1.0229 0.0988 29 1 -0.3633 0.5971 0.8363 30 1 -0.3633 0.4258 -0.9354 31 1 0.5503 2.2221 1.2920 32 1 2.1580 2.9845 1.3415 33 1 2.4355 0.3622 2.3124 34 1 1.0760 1.9198 6.2239 35 1 3.1989 0.4785 7.3573 36 1 1.8408 -0.6544 7.1560 37 1 3.9898 4.5958 9.1859 38 1 -0.6048 0.9984 9.4329 39 1 -0.2741 -0.4709 8.3682 40 1 1.8455 -0.9447 9.6795 41 1 1.5158 0.5243 10.7446 42 1 3.9768 2.1813 -0.0819 43 1 3.9001 0.6245 0.7782 44 1 3.4760 -0.5405 -1.3692 45 1 5.0045 0.3694 -1.4270 46 1 3.6800 0.7227 -3.4935 47 1 3.8481 2.2385 -2.5759 48 1 1.4381 0.3669 -2.4944 49 1 1.5148 1.9233 -3.3544 50 1 0.4104 2.1779 -1.1484 51 1 1.9389 3.0886 -1.2066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117602081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:26 Heat of formation + Delta-G solvation = -126.885892 kcal Electronic energy + Delta-G solvation = -30504.357073 eV Core-core repulsion = 26403.204108 eV Total energy + Delta-G solvation = -4101.152965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.88642 -40.96233 -39.64040 -38.65540 -36.84275 -36.07319 -34.91266 -34.29129 -31.87994 -31.79047 -29.13969 -27.96503 -27.50210 -26.93132 -24.47915 -23.53060 -23.19403 -22.03273 -21.43309 -21.12620 -20.56271 -19.65275 -18.37894 -17.92054 -17.45930 -17.15182 -16.96263 -16.66940 -16.53522 -16.28000 -15.95863 -15.75964 -15.40193 -15.13243 -14.88277 -14.75831 -14.64295 -14.37806 -14.17475 -13.97553 -13.73408 -13.44343 -13.32393 -13.04377 -13.00908 -12.86469 -12.78292 -12.71412 -12.16858 -12.16147 -12.10928 -11.98717 -11.48825 -11.44238 -11.32500 -11.05170 -10.92129 -10.82770 -10.73191 -10.48046 -10.36655 -10.33732 -10.06300 -8.31841 -6.36262 0.31825 1.29363 1.33130 1.37804 1.48906 2.10817 2.34510 2.55405 2.84782 3.01357 3.31405 3.43898 3.49944 3.59639 3.77704 3.96930 4.12891 4.19657 4.26756 4.30543 4.38016 4.42836 4.42963 4.49164 4.49820 4.58169 4.58554 4.64792 4.70101 4.72415 4.83758 4.91120 4.92769 5.01832 5.04087 5.07424 5.09891 5.19791 5.26119 5.27924 5.31421 5.34529 5.38703 5.52935 5.58089 5.67030 5.93424 6.21576 6.28268 6.38978 6.70061 6.72995 6.93290 7.32053 8.82680 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019201 B = 0.002569 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.888118 B =10895.089145 C =11260.469549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.379 6.379 3 C 0.115 3.885 4 C 0.089 3.911 5 N -0.679 5.679 6 C 0.510 3.490 7 O -0.542 6.542 8 C 0.497 3.503 9 O -0.552 6.552 10 N -0.670 5.670 11 C 0.156 3.844 12 C -0.049 4.049 13 C -0.483 4.483 14 H 0.040 0.960 15 C 0.032 3.968 16 N -0.938 5.938 17 Si 0.916 3.084 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.216 1.216 21 C -0.159 4.159 22 C -0.174 4.174 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.110 4.110 27 C -0.140 4.140 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.419 0.581 34 H 0.416 0.584 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.264 0.736 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 -9.303 -23.947 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.298 6.298 3 C 0.075 3.925 4 C -0.034 4.034 5 N -0.332 5.332 6 C 0.290 3.710 7 O -0.420 6.420 8 C 0.277 3.723 9 O -0.432 6.432 10 N -0.320 5.320 11 C 0.032 3.968 12 C -0.050 4.050 13 C -0.520 4.520 14 H 0.058 0.942 15 C -0.167 4.167 16 N -0.577 5.577 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.222 1.222 20 H -0.138 1.138 21 C -0.196 4.196 22 C -0.212 4.212 23 C -0.148 4.148 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.148 4.148 27 C -0.178 4.178 28 H 0.110 0.890 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.257 0.743 34 H 0.254 0.746 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.309 -9.283 -23.896 25.739 hybrid contribution 0.560 0.488 0.645 0.984 sum -1.749 -8.795 -23.251 24.920 Atomic orbital electron populations 1.22907 0.80673 1.03358 1.00668 1.87969 1.20402 1.26712 1.94763 1.21751 0.94964 0.83780 0.91985 1.22288 1.01820 0.94897 0.84441 1.45558 1.58622 1.25064 1.03998 1.20059 0.80044 0.85887 0.85021 1.90778 1.41591 1.23553 1.86052 1.20297 0.81217 0.85755 0.85022 1.90692 1.40932 1.25494 1.86057 1.45797 1.48774 1.32741 1.04719 1.21107 0.97310 0.94448 0.83893 1.19463 1.00190 0.93160 0.92214 1.20347 0.93284 0.90105 1.48274 0.94162 1.25658 1.01297 0.95774 0.93975 1.70048 1.23507 1.13655 1.50487 0.86232 0.79361 0.82270 0.77990 1.21166 1.22244 1.13777 1.22902 0.90591 1.02401 1.03669 1.23088 1.01968 0.99952 0.96183 1.21617 0.91640 1.02254 0.99276 1.21430 1.00702 0.99331 0.93570 1.21545 0.95556 1.00592 0.97873 1.21419 0.96288 1.00699 0.96382 1.22086 1.01918 0.99887 0.93941 0.88956 0.94616 0.92126 0.90452 0.89961 0.74288 0.74643 0.93965 0.90137 0.92654 0.89904 0.87928 0.88262 0.89907 0.89549 0.92177 0.92004 0.91459 0.91294 0.91540 0.91982 0.90694 0.90579 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.15 113.37 1.15 1.45 16 2 O -0.38 -6.81 8.49 -148.98 -1.26 -8.07 16 3 C 0.12 1.86 0.36 -10.79 0.00 1.85 16 4 C 0.09 1.85 4.11 86.38 0.36 2.21 16 5 N -0.68 -17.92 5.15 -464.40 -2.39 -20.31 16 6 C 0.51 17.55 7.89 87.27 0.69 18.23 16 7 O -0.54 -21.46 16.50 -3.22 -0.05 -21.51 16 8 C 0.50 19.01 7.88 87.27 0.69 19.70 16 9 O -0.55 -21.96 16.48 -3.27 -0.05 -22.02 16 10 N -0.67 -27.39 5.39 -464.40 -2.50 -29.89 16 11 C 0.16 6.36 5.22 86.38 0.45 6.82 16 12 C -0.05 -2.10 0.99 -52.92 -0.05 -2.15 16 13 C -0.48 -25.88 8.64 25.60 0.22 -25.66 16 14 H 0.04 2.42 8.06 -2.92 -0.02 2.39 16 15 C 0.03 1.80 5.46 84.66 0.46 2.27 16 16 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 17 Si 0.92 43.33 25.09 68.60 1.72 45.05 16 18 H -0.28 -13.72 7.00 99.48 0.70 -13.02 16 19 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 20 H -0.22 -8.98 5.70 99.48 0.57 -8.41 16 21 C -0.16 -5.67 9.93 30.62 0.30 -5.36 16 22 C -0.17 -6.43 7.98 30.62 0.24 -6.19 16 23 C -0.11 -1.76 4.83 30.59 0.15 -1.61 16 24 C -0.11 -1.56 5.78 30.59 0.18 -1.38 16 25 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 26 C -0.11 -1.20 5.77 30.60 0.18 -1.02 16 27 C -0.14 -1.70 4.25 30.59 0.13 -1.57 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 0.60 6.39 -2.39 -0.02 0.58 16 30 H 0.06 0.69 6.61 -2.38 -0.02 0.68 16 31 H 0.08 1.63 6.82 -2.39 -0.02 1.62 16 32 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.42 10.65 6.85 -92.71 -0.64 10.01 16 34 H 0.42 17.92 7.47 -92.71 -0.69 17.23 16 35 H 0.04 1.87 5.22 -2.39 -0.01 1.86 16 36 H 0.08 2.92 8.06 -2.38 -0.02 2.90 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.10 3.10 8.14 -2.39 -0.02 3.09 16 40 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.12 7.21 -2.39 -0.02 1.10 16 44 H 0.06 0.99 7.68 -2.39 -0.02 0.97 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.77 7.62 -2.38 -0.02 0.75 16 49 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 50 H 0.08 0.85 6.62 -2.39 -0.02 0.83 16 51 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -67.07 396.64 0.54 -66.53 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.53 Total: 40.98 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.32 Total: 6.47 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -4.60 Total: -107.43 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -1.37 Total: -51.60 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.72 Total: 45.05 kcal Total: -67.07 0.54 -66.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117602081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.356 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds