Wall clock time and date at job start Tue Mar 31 2020 21:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46492 * 119.99881 * 2 1 4 4 C 1.52998 * 109.47426 * 269.99817 * 3 2 1 5 5 C 1.53002 * 109.47428 * 180.02562 * 4 3 2 6 6 C 1.53173 * 109.53994 * 294.55778 * 5 4 3 7 7 C 1.53095 * 109.16019 * 183.15341 * 6 5 4 8 8 O 1.42901 * 109.41780 * 57.60551 * 7 6 5 9 9 C 1.42899 * 114.09923 * 298.84781 * 8 7 6 10 10 C 1.53091 * 109.41708 * 61.15112 * 9 8 7 11 11 C 1.34778 * 119.99695 * 179.97438 * 2 1 3 12 12 O 1.21354 * 119.99564 * 172.47434 * 11 2 1 13 13 C 1.49455 * 120.00281 * 352.47533 * 11 2 1 14 14 O 1.21350 * 119.99979 * 353.91630 * 13 11 2 15 15 N 1.34779 * 119.99608 * 173.91219 * 13 11 2 16 16 C 1.46500 * 119.99477 * 175.41898 * 15 13 11 17 17 C 1.52993 * 109.47053 * 184.99556 * 16 15 13 18 18 C 1.50699 * 115.55242 * 55.28231 * 17 16 15 19 19 H 1.08004 * 120.00176 * 269.15096 * 18 17 16 20 20 C 1.37877 * 119.99957 * 89.15357 * 18 17 16 21 21 N 1.31517 * 119.99968 * 180.38613 * 20 18 17 22 22 Si 1.86801 * 120.00100 * 0.38475 * 20 18 17 23 23 H 1.48495 * 109.47118 * 92.30914 * 22 20 18 24 24 H 1.48500 * 109.47349 * 212.31594 * 22 20 18 25 25 H 1.48505 * 109.46840 * 332.31220 * 22 20 18 26 26 C 1.53004 * 117.49842 * 269.61257 * 17 16 15 27 27 C 1.53004 * 117.50047 * 200.95681 * 17 16 15 28 28 H 1.09004 * 109.46807 * 264.99998 * 1 2 3 29 29 H 1.08998 * 109.46933 * 25.00301 * 1 2 3 30 30 H 1.08998 * 109.47106 * 145.00483 * 1 2 3 31 31 H 1.09004 * 109.47551 * 30.00513 * 3 2 1 32 32 H 1.09009 * 109.46943 * 149.99907 * 3 2 1 33 33 H 1.09003 * 109.46912 * 300.00179 * 4 3 2 34 34 H 1.08994 * 109.46658 * 59.99802 * 4 3 2 35 35 H 1.08998 * 109.54030 * 54.82244 * 5 4 3 36 36 H 1.09004 * 109.52561 * 303.05259 * 6 5 4 37 37 H 1.09002 * 109.52887 * 63.24875 * 6 5 4 38 38 H 1.08997 * 109.48028 * 297.62313 * 7 6 5 39 39 H 1.09003 * 109.48385 * 177.59115 * 7 6 5 40 40 H 1.09003 * 109.47477 * 301.17169 * 9 8 7 41 41 H 1.09001 * 109.49162 * 181.14807 * 9 8 7 42 42 H 1.09001 * 109.52346 * 182.48959 * 10 9 8 43 43 H 1.09003 * 109.51811 * 62.30346 * 10 9 8 44 44 H 0.96996 * 120.00304 * 355.15069 * 15 13 11 45 45 H 1.09002 * 109.47395 * 304.99474 * 16 15 13 46 46 H 1.09000 * 109.46978 * 64.99300 * 16 15 13 47 47 H 0.97003 * 119.99800 * 179.97438 * 21 20 18 48 48 H 1.08994 * 117.49964 * 0.02562 * 26 17 16 49 49 H 1.09004 * 117.50260 * 145.01985 * 26 17 16 50 50 H 1.09002 * 117.50079 * 214.98118 * 27 17 16 51 51 H 1.09001 * 117.49765 * 359.97362 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4425 6 6 2.3377 4.1356 -0.8424 7 6 3.0814 5.4716 -0.9186 8 8 3.4185 5.7507 -2.2790 9 6 4.2788 4.7796 -2.8780 10 6 3.5832 3.4159 -2.8805 11 6 2.1389 -1.1672 0.0005 12 8 3.3446 -1.1718 -0.1371 13 6 1.4013 -2.4559 0.1706 14 8 0.2133 -2.4469 0.4182 15 7 2.0555 -3.6279 0.0488 16 6 1.3566 -4.8879 0.3140 17 6 2.3485 -6.0494 0.2269 18 6 3.5601 -5.9375 1.1160 19 1 4.4589 -5.4656 0.7471 20 6 3.5214 -6.4376 2.4003 21 7 4.5762 -6.3331 3.1787 22 14 1.9705 -7.2634 3.0347 23 1 2.0510 -8.7251 2.7861 24 1 1.8388 -7.0156 4.4929 25 1 0.7888 -6.7056 2.3292 26 6 2.5316 -6.7215 -1.1354 27 6 1.7788 -7.4481 -0.0180 28 1 -0.3633 -0.0896 1.0238 29 1 -0.3633 0.9313 -0.4344 30 1 -0.3633 -0.8418 -0.5894 31 1 1.6085 2.0284 0.5139 32 1 3.1500 1.1383 0.5139 33 1 3.0417 0.9507 -1.9563 34 1 1.5002 1.8407 -1.9562 35 1 4.1275 2.9306 -0.8508 36 1 1.4066 4.2045 -1.4049 37 1 2.1186 3.8996 0.1990 38 1 3.9924 5.4150 -0.3228 39 1 2.4428 6.2658 -0.5320 40 1 5.2054 4.7140 -2.3077 41 1 4.5030 5.0753 -3.9029 42 1 4.2549 2.6651 -3.2967 43 1 2.6773 3.4702 -3.4842 44 1 2.9880 -3.6374 -0.2182 45 1 0.9191 -4.8577 1.3119 46 1 0.5673 -5.0279 -0.4246 47 1 4.5488 -6.6846 4.0824 48 1 1.9456 -6.3359 -1.9696 49 1 3.5283 -7.0831 -1.3884 50 1 2.2805 -8.2874 0.4636 51 1 0.6972 -7.5409 -0.1167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117685740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:03 Heat of formation + Delta-G solvation = -95.712095 kcal Electronic energy + Delta-G solvation = -29780.223146 eV Core-core repulsion = 25680.421978 eV Total energy + Delta-G solvation = -4099.801168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.55873 -39.75107 -38.39161 -37.10020 -36.45057 -34.91268 -33.42938 -32.15593 -31.49003 -30.34114 -27.47558 -26.83190 -25.91985 -25.20787 -23.92499 -23.01588 -21.84857 -21.48787 -20.34884 -19.73260 -19.04004 -17.51815 -16.95537 -16.44526 -16.34937 -16.33090 -15.91040 -15.39408 -15.28572 -15.11439 -14.99458 -14.61465 -14.37899 -13.94755 -13.83729 -13.46986 -13.23003 -12.99120 -12.83336 -12.67201 -12.61602 -12.53709 -12.35552 -12.31624 -11.98972 -11.69078 -11.53013 -11.20846 -11.11701 -11.11308 -10.85500 -10.66802 -10.60581 -10.53406 -10.25597 -9.87353 -9.68891 -9.24622 -9.15165 -8.80266 -8.69623 -8.60885 -8.43038 -6.17622 -4.23170 1.74144 2.55537 3.24793 3.35683 3.38765 3.49649 3.54213 3.78659 4.31263 4.35709 4.36327 4.49905 4.63865 4.66044 4.82564 4.87244 4.96979 5.00198 5.08603 5.11369 5.13879 5.16553 5.28167 5.34085 5.40504 5.44795 5.53536 5.59698 5.60890 5.67353 5.71980 5.78689 5.89792 5.93495 5.96120 6.00698 6.07734 6.11592 6.35125 6.36456 6.38413 6.64168 6.80804 6.84846 6.92298 7.02768 7.09486 7.63228 7.70392 8.08315 8.37890 8.45049 8.83710 9.44380 10.93568 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.002170 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.491690 B =12901.807483 C =13025.336254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.596 5.596 3 C 0.114 3.886 4 C -0.128 4.128 5 C -0.087 4.087 6 C -0.154 4.154 7 C 0.060 3.940 8 O -0.386 6.386 9 C 0.060 3.940 10 C -0.150 4.150 11 C 0.506 3.494 12 O -0.513 6.513 13 C 0.497 3.503 14 O -0.537 6.537 15 N -0.663 5.663 16 C 0.154 3.846 17 C -0.018 4.018 18 C -0.493 4.493 19 H 0.080 0.920 20 C 0.080 3.920 21 N -0.892 5.892 22 Si 0.880 3.120 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.257 1.257 26 C -0.178 4.178 27 C -0.191 4.191 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.417 0.583 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.266 0.734 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 20.010 -9.786 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.330 5.330 3 C -0.008 4.008 4 C -0.167 4.167 5 C -0.107 4.107 6 C -0.191 4.191 7 C -0.017 4.017 8 O -0.304 6.304 9 C -0.017 4.017 10 C -0.188 4.188 11 C 0.289 3.711 12 O -0.387 6.387 13 C 0.277 3.723 14 O -0.417 6.417 15 N -0.313 5.313 16 C 0.030 3.970 17 C -0.020 4.020 18 C -0.530 4.530 19 H 0.098 0.902 20 C -0.124 4.124 21 N -0.528 5.528 22 Si 0.708 3.292 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.182 1.182 26 C -0.215 4.215 27 C -0.229 4.229 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.254 0.746 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.108 0.892 50 H 0.109 0.891 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.335 20.096 -9.563 23.140 hybrid contribution -0.295 -0.852 0.637 1.104 sum -6.630 19.244 -8.926 22.225 Atomic orbital electron populations 1.22058 0.77794 1.02752 1.03240 1.47678 1.08055 1.05107 1.72197 1.21626 0.97917 0.84067 0.97216 1.21974 1.00785 0.96661 0.97238 1.21152 0.98880 0.94141 0.96482 1.22326 0.99662 0.95181 1.01950 1.22590 0.98827 0.97020 0.83283 1.87924 1.68221 1.47940 1.26362 1.22590 0.92235 0.88236 0.98605 1.22235 1.01850 0.97664 0.97072 1.20451 0.87504 0.85336 0.77788 1.90768 1.13996 1.87068 1.46894 1.19928 0.87248 0.85264 0.79854 1.90678 1.14629 1.87343 1.49014 1.45713 1.16425 1.04721 1.64429 1.21264 0.93488 0.81991 1.00221 1.19611 0.96876 0.88890 0.96591 1.20189 0.96604 1.39815 0.96382 0.90160 1.24997 0.95945 0.95000 0.96410 1.69893 1.29172 1.45470 1.08292 0.86848 0.84693 0.80060 0.77584 1.20429 1.22114 1.18151 1.22906 1.00848 1.05966 0.91827 1.22937 0.97935 0.97478 1.04538 0.91965 0.91989 0.89194 0.90147 0.89716 0.90897 0.91613 0.90604 0.90902 0.90596 0.93150 0.88960 0.93130 0.88932 0.90610 0.91005 0.74566 0.91277 0.93130 0.92446 0.90809 0.89249 0.89081 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 9.19 59.85 0.55 1.48 16 2 N -0.60 -7.73 2.87 -182.08 -0.52 -8.26 16 3 C 0.11 1.17 5.09 -4.05 -0.02 1.15 16 4 C -0.13 -1.17 5.01 -26.73 -0.13 -1.30 16 5 C -0.09 -0.67 2.27 -90.44 -0.21 -0.88 16 6 C -0.15 -1.03 5.10 -26.59 -0.14 -1.16 16 7 C 0.06 0.42 6.84 37.21 0.25 0.67 16 8 O -0.39 -3.52 10.77 -35.23 -0.38 -3.90 16 9 C 0.06 0.44 6.84 37.20 0.25 0.70 16 10 C -0.15 -1.12 5.42 -26.60 -0.14 -1.26 16 11 C 0.51 8.45 7.71 -11.58 -0.09 8.36 16 12 O -0.51 -9.65 16.17 5.49 0.09 -9.56 16 13 C 0.50 9.12 7.68 -11.58 -0.09 9.03 16 14 O -0.54 -10.15 13.46 5.50 0.07 -10.07 16 15 N -0.66 -12.94 5.34 -60.73 -0.32 -13.26 16 16 C 0.15 3.14 5.36 -4.04 -0.02 3.11 16 17 C -0.02 -0.40 0.94 -155.66 -0.15 -0.55 16 18 C -0.49 -12.99 8.86 -34.44 -0.31 -13.29 16 19 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 22 Si 0.88 21.18 24.80 -169.99 -4.22 16.97 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.26 -5.85 5.69 56.52 0.32 -5.53 16 26 C -0.18 -3.38 9.93 -26.69 -0.27 -3.65 16 27 C -0.19 -3.83 7.39 -26.69 -0.20 -4.03 16 28 H 0.06 0.71 8.06 -51.93 -0.42 0.30 16 29 H 0.06 0.50 8.03 -51.93 -0.42 0.08 16 30 H 0.09 1.13 6.10 -51.93 -0.32 0.81 16 31 H 0.08 0.63 6.59 -51.93 -0.34 0.29 16 32 H 0.08 0.99 7.54 -51.92 -0.39 0.60 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.44 6.75 -51.93 -0.35 0.09 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.42 8.29 7.66 -40.82 -0.31 7.98 16 45 H 0.07 1.53 6.88 -51.93 -0.36 1.18 16 46 H 0.05 0.95 8.10 -51.93 -0.42 0.52 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 50 H 0.09 1.92 6.93 -51.93 -0.36 1.56 16 51 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 401.25 15.07 6.05 6.05 Total: -1.00 -31.08 401.25 -8.07 -39.16 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -8.82 Total: 8.12 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.79 Total: 0.49 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.07 Total: -47.25 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.22 Total: -23.54 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.22 Total: 16.97 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.08 -8.07 -39.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.557 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds